mRNA_H-elongata_contig134825.2463.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134825.2463.1
Unique NamemRNA_H-elongata_contig134825.2463.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig134825.2463.1 vs. uniprot
Match: D8LKR2_ECTSI (Sodium/hydrogen exchanger family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR2_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 3.510e-37
Identity = 68/89 (76.40%), Postives = 76/89 (85.39%), Query Frame = 1
Query:    4 VSPHVILFVFLPILIFESAFNTDVHIFQRQFWQVLILAGPGVIIATALTAFFIKYVFPYDWGWSAVLMLGGMLSATDPVAVVALLKELG 270
            V   +ILFVFLPILIFESAF TDVHIFQR+FWQV+ LAGPGV IAT +TA  +KYVFPY W W+  LMLGG+LSATDPVAVVALLK+LG
Sbjct:    8 VDSQIILFVFLPILIFESAFETDVHIFQREFWQVVTLAGPGVAIATIITASIVKYVFPYGWDWNLSLMLGGILSATDPVAVVALLKDLG 96          
BLAST of mRNA_H-elongata_contig134825.2463.1 vs. uniprot
Match: D7G372_ECTSI (Sodium/hydrogen exchanger family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G372_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 4.190e-33
Identity = 62/94 (65.96%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    7 SPHVILFVFLPILIFESAFNTDVHIFQRQFWQVLILAGPGVIIATALTAFFIKYVFPYDWGWSAVLMLGGMLSATDPVAVVALLKELGERGELA 288
            +P +I +  LPILIFESAF TDVHIF R+ WQVL+LAGPGV+ AT + A F KYVFPYDW W+  L  G M SATDPVAVVAL+KELG    LA
Sbjct:   46 NPEIIFYALLPILIFESAFFTDVHIFLREMWQVLVLAGPGVLAATIMMAVFSKYVFPYDWDWNTCLFFGAMTSATDPVAVVALMKELGVSERLA 139          
BLAST of mRNA_H-elongata_contig134825.2463.1 vs. uniprot
Match: A0A6H5L0H9_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H9_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 7.510e-33
Identity = 62/94 (65.96%), Postives = 70/94 (74.47%), Query Frame = 1
Query:    7 SPHVILFVFLPILIFESAFNTDVHIFQRQFWQVLILAGPGVIIATALTAFFIKYVFPYDWGWSAVLMLGGMLSATDPVAVVALLKELGERGELA 288
             P +I +  LPILIFESAF TDVHIF R+ WQVL+LAGPGV+ AT + A F KYVFPYDW W+  L  G M SATDPVAVVAL+KELG    LA
Sbjct:  113 DPEIIFYALLPILIFESAFFTDVHIFLREMWQVLVLAGPGVMAATIMMAVFSKYVFPYDWDWNTCLFFGAMTSATDPVAVVALMKELGVSERLA 206          
BLAST of mRNA_H-elongata_contig134825.2463.1 vs. uniprot
Match: A0A7S2SQN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQN5_9STRA)

HSP 1 Score: 125 bits (315), Expect = 8.770e-33
Identity = 59/89 (66.29%), Postives = 72/89 (80.90%), Query Frame = 1
Query:    4 VSPHVILFVFLPILIFESAFNTDVHIFQRQFWQVLILAGPGVIIATALTAFFIKYVFPYDWGWSAVLMLGGMLSATDPVAVVALLKELG 270
            VSP VILF F+PIL+FES+F+TDVHI + +  QVL LAGPGVI++T LTA F+KYVF Y W W+  L+ G M+SATDPVAVVAL K+LG
Sbjct:  131 VSPEVILFAFIPILLFESSFSTDVHIIRHEALQVLFLAGPGVIVSTFLTALFVKYVFNYGWSWTLCLLFGSMMSATDPVAVVALFKDLG 219          
BLAST of mRNA_H-elongata_contig134825.2463.1 vs. uniprot
Match: A0A1Y5DAQ5_9GAMM (Peptidase (Fragment) n=1 Tax=Bermanella sp. 47_1433_sub80_T6 TaxID=1856278 RepID=A0A1Y5DAQ5_9GAMM)

HSP 1 Score: 124 bits (311), Expect = 1.400e-32
Identity = 56/94 (59.57%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    4 VSPHVILFVFLPILIFESAFNTDVHIFQRQFWQVLILAGPGVIIATALTAFFIKYVFPYDWGWSAVLMLGGMLSATDPVAVVALLKELGERGEL 285
            ++PH+IL++FLPILIFESAF  +VH+F+R F Q+ +LA PG+++ATA+TA  +KY+FP+DW W    M G ++SATDPVAVVALLKEL  R  L
Sbjct:   71 INPHLILWLFLPILIFESAFALEVHLFRRIFSQIALLAVPGLMVATAITAVLVKYIFPWDWSWPVCFMFGALISATDPVAVVALLKELSSRKRL 164          
BLAST of mRNA_H-elongata_contig134825.2463.1 vs. uniprot
Match: UPI00117DD010 (sodium:proton antiporter n=1 Tax=Catenovulum sediminis TaxID=1740262 RepID=UPI00117DD010)

HSP 1 Score: 125 bits (313), Expect = 2.670e-31
Identity = 57/94 (60.64%), Postives = 74/94 (78.72%), Query Frame = 1
Query:    4 VSPHVILFVFLPILIFESAFNTDVHIFQRQFWQVLILAGPGVIIATALTAFFIKYVFPYDWGWSAVLMLGGMLSATDPVAVVALLKELGERGEL 285
            + PH+ILF+FLP LIFESA++ + H+F+R F Q+ +LA PG+II+T LTA F+KYVFP+DW W+   M G ++SATDPVAVVALLKEL  R  L
Sbjct:   70 IDPHLILFLFLPTLIFESAYSIETHLFKRTFNQISLLAVPGLIISTTLTAAFVKYVFPWDWSWTVCFMFGALISATDPVAVVALLKELSSRKRL 163          
BLAST of mRNA_H-elongata_contig134825.2463.1 vs. uniprot
Match: A0A5A8DG13_CAFRO (Cyclic nucleotide-binding domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DG13_CAFRO)

HSP 1 Score: 124 bits (310), Expect = 8.200e-31
Identity = 60/95 (63.16%), Postives = 70/95 (73.68%), Query Frame = 1
Query:    1 HVSPHVILFVFLPILIFESAFNTDVHIFQRQFWQVLILAGPGVIIATALTAFFIKYVFPYDWGWSAVLMLGGMLSATDPVAVVALLKELGERGEL 285
            ++ PH IL VFLP LIFESAF+ D HIF+R FWQ+ ILA PG+ I T LTA    Y+FPY W W A LM G +L+ATDPVAVVALLKELG   +L
Sbjct:   87 NIDPHTILVVFLPTLIFESAFSVDFHIFRRSFWQLFILAVPGMAIGTGLTAAVGVYLFPYQWSWEASLMFGSILAATDPVAVVALLKELGASKQL 181          
BLAST of mRNA_H-elongata_contig134825.2463.1 vs. uniprot
Match: F0Y140_AURAN (Na_H_Exchanger domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y140_AURAN)

HSP 1 Score: 123 bits (308), Expect = 1.410e-30
Identity = 60/89 (67.42%), Postives = 70/89 (78.65%), Query Frame = 1
Query:    7 SPHVILFVFLPILIFESAFNTDVHIFQRQFWQVLILAGPGVIIATALTAFFIKYVFP-YDWGWSAVLMLGGMLSATDPVAVVALLKELG 270
            +P VIL+ F+PIL+FESAF TD HIF RQ WQ+L LAGPGV++A+ LT  F+K VF  Y W W  VLM G M+SATDPVAVVALLKELG
Sbjct:   59 TPQVILYCFVPILVFESAFMTDTHIFSRQKWQILTLAGPGVLVASILTGGFVKAVFTDYGWDWPTVLMFGAMMSATDPVAVVALLKELG 147          
BLAST of mRNA_H-elongata_contig134825.2463.1 vs. uniprot
Match: W7QFK9_9ALTE (NhaP-type Na+/H+ and K+/H+ antiporter n=2 Tax=Catenovulum agarivorans TaxID=1172192 RepID=W7QFK9_9ALTE)

HSP 1 Score: 122 bits (307), Expect = 1.770e-30
Identity = 55/94 (58.51%), Postives = 72/94 (76.60%), Query Frame = 1
Query:    4 VSPHVILFVFLPILIFESAFNTDVHIFQRQFWQVLILAGPGVIIATALTAFFIKYVFPYDWGWSAVLMLGGMLSATDPVAVVALLKELGERGEL 285
            + PH+ILF+FLP LIFESA+  + H+F+R F Q+ +LA PG+I+ T++TA F+KYVFP+DW W    M G ++SATDPVAVVALLKEL  R  L
Sbjct:   70 IDPHLILFLFLPTLIFESAYAIETHLFKRTFSQIALLAVPGLIVCTSITAVFVKYVFPWDWSWPICFMFGALISATDPVAVVALLKELSSRKRL 163          
BLAST of mRNA_H-elongata_contig134825.2463.1 vs. uniprot
Match: UPI001EF3AC7F (cation:proton antiporter n=1 Tax=Vibrio sp. Of7-15 TaxID=2724879 RepID=UPI001EF3AC7F)

HSP 1 Score: 121 bits (304), Expect = 5.160e-30
Identity = 55/94 (58.51%), Postives = 73/94 (77.66%), Query Frame = 1
Query:    4 VSPHVILFVFLPILIFESAFNTDVHIFQRQFWQVLILAGPGVIIATALTAFFIKYVFPYDWGWSAVLMLGGMLSATDPVAVVALLKELGERGEL 285
            +SPH+I+FVFLP LIFESAF  +VH+F+R F Q+ +LA PG+++AT LTA   K+VFP+DW W+   + G ++SATDPVAVVALLKE+  R  L
Sbjct:   71 ISPHIIMFVFLPTLIFESAFAMEVHLFRRMFTQIALLAIPGLLLATTLTASLAKWVFPWDWSWALCFLFGALISATDPVAVVALLKEVSSRKRL 164          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134825.2463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKR2_ECTSI3.510e-3776.40Sodium/hydrogen exchanger family protein n=1 Tax=E... [more]
D7G372_ECTSI4.190e-3365.96Sodium/hydrogen exchanger family n=1 Tax=Ectocarpu... [more]
A0A6H5L0H9_9PHAE7.510e-3365.96Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
A0A7S2SQN5_9STRA8.770e-3366.29Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A1Y5DAQ5_9GAMM1.400e-3259.57Peptidase (Fragment) n=1 Tax=Bermanella sp. 47_143... [more]
UPI00117DD0102.670e-3160.64sodium:proton antiporter n=1 Tax=Catenovulum sedim... [more]
A0A5A8DG13_CAFRO8.200e-3163.16Cyclic nucleotide-binding domain-containing protei... [more]
F0Y140_AURAN1.410e-3067.42Na_H_Exchanger domain-containing protein (Fragment... [more]
W7QFK9_9ALTE1.770e-3058.51NhaP-type Na+/H+ and K+/H+ antiporter n=2 Tax=Cate... [more]
UPI001EF3AC7F5.160e-3058.51cation:proton antiporter n=1 Tax=Vibrio sp. Of7-15... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134825contigH-elongata_contig134825:516..1119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue2e-30
Seed eggNOG ortholog2880.D8LKR2
EggNOG free text desc.potassium:proton antiporter activity
EggNOG OGsCOG0025@1,KOG1965@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929800.6383991-CDS-H-elongata_contig134825:515..7101622929800.6383991-CDS-H-elongata_contig134825:515..710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134825 516..710 -
1691679162.4715502-CDS-H-elongata_contig134825:515..7101691679162.4715502-CDS-H-elongata_contig134825:515..710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134825 516..710 -
1622929800.6572719-CDS-H-elongata_contig134825:1017..11191622929800.6572719-CDS-H-elongata_contig134825:1017..1119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134825 1018..1119 -
1691679162.4806993-CDS-H-elongata_contig134825:1017..11191691679162.4806993-CDS-H-elongata_contig134825:1017..1119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134825 1018..1119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134825.2463.1prot_H-elongata_contig134825.2463.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134825 516..1119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134825.2463.1

>prot_H-elongata_contig134825.2463.1 ID=prot_H-elongata_contig134825.2463.1|Name=mRNA_H-elongata_contig134825.2463.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
HVSPHVILFVFLPILIFESAFNTDVHIFQRQFWQVLILAGPGVIIATALT
AFFIKYVFPYDWGWSAVLMLGGMLSATDPVAVVALLKELGERGELARA*
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mRNA from alignment at H-elongata_contig134825:516..1119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134825.2463.1 ID=mRNA_H-elongata_contig134825.2463.1|Name=mRNA_H-elongata_contig134825.2463.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=604bp|location=Sequence derived from alignment at H-elongata_contig134825:516..1119- (Himanthalia elongata Himel1 dioecious)
CATGTCTCCCCGCACGTTATTCTCTTTGTGTTCCTCCCGATTCTCATCTT CGAGTCCGCGTTCAACACCGACGTGCACATCTTCCAGAGGCAGTTCTGGC AGGTACGTCGAGCGTAGGGCTTGTAAATGAGAGCGGGTCACCGAATCACG TTGGCGGTGTTTCGACGATTATTTTCGCAAGGGTGTGATGGAAGGCGTGA AATGTGGAAAAATTGGGAAAAGGGGGGTAAGGTAGGAAAAGACAGATGGG ATACGGGGGGGGTAGAGCGTCTCCCTCTCCCGTAGCGTGCTAGTGGTGTC CTAGATCGCTCACACGGGTGTCTGGTCGATGACCGTGTCTGCGCGCGAGT GAGTTTTCGTGTCGTGACACCACGCCGCACACCATGCGGTCTACCACCGA ACTTTGCAGGTGCTGATCCTGGCCGGACCGGGAGTGATCATCGCTACCGC GCTCACGGCCTTCTTCATCAAGTACGTGTTTCCGTACGACTGGGGCTGGA GCGCGGTTCTGATGCTGGGTGGCATGCTCAGCGCCACGGACCCTGTCGCT GTGGTGGCGCTGCTGAAGGAGCTGGGTGAGAGAGGAGAGCTCGCGCGCGC GTGA
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Coding sequence (CDS) from alignment at H-elongata_contig134825:516..1119-

>mRNA_H-elongata_contig134825.2463.1 ID=mRNA_H-elongata_contig134825.2463.1|Name=mRNA_H-elongata_contig134825.2463.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig134825:516..1119- (Himanthalia elongata Himel1 dioecious)
CATGTCTCCCCGCACGTTATTCTCTTTGTGTTCCTCCCGATTCTCATCTT
CGAGTCCGCGTTCAACACCGACGTGCACATCTTCCAGAGGCAGTTCTGGC
AGCATGTCTCCCCGCACGTTATTCTCTTTGTGTTCCTCCCGATTCTCATC
TTCGAGTCCGCGTTCAACACCGACGTGCACATCTTCCAGAGGCAGTTCTG
GCAGGTGCTGATCCTGGCCGGACCGGGAGTGATCATCGCTACCGCGCTCA
CGGCCTTCTTCATCAAGTACGTGTTTCCGTACGACTGGGGCTGGAGCGCG
GTTCTGATGCTGGGTGGCATGCTCAGCGCCACGGACCCTGTCGCTGTGGT
GGCGCTGCTGAAGGAGCTGGGTGAGAGAGGAGAGCTCGCGCGCGCGTGAG
TGCTGATCCTGGCCGGACCGGGAGTGATCATCGCTACCGCGCTCACGGCC
TTCTTCATCAAGTACGTGTTTCCGTACGACTGGGGCTGGAGCGCGGTTCT
GATGCTGGGTGGCATGCTCAGCGCCACGGACCCTGTCGCTGTGGTGGCGC
TGCTGAAGGAGCTGGGTGAGAGAGGAGAGCTCGCGCGCGCGTGA
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