mRNA_H-elongata_contig134428.2443.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134428.2443.1
Unique NamemRNA_H-elongata_contig134428.2443.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig134428.2443.1 vs. uniprot
Match: A0A6H5K6Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.760e-14
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:   13 RYTTWITEGWRVLLWSEPSAKLFWEMLCMY 102
            RYTTWITEGWRVL WSEPSAKLFWEMLCMY
Sbjct:   60 RYTTWITEGWRVLQWSEPSAKLFWEMLCMY 89
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BLAST of mRNA_H-elongata_contig134428.2443.1 vs. uniprot
Match: D7FP07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP07_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.180e-13
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:   13 RYTTWITEGWRVLLWSEPSAKLFWEMLCMY 102
            RYTTWITEGWRVL WSEPSAKLFWEMLCMY
Sbjct:   60 RYTTWITEGWRVLQWSEPSAKLFWEMLCMY 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134428.2443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6Y6_9PHAE3.760e-1496.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP07_ECTSI1.180e-1396.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134428contigH-elongata_contig134428:1267..1371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size105
Cds size105
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929798.7579212-CDS-H-elongata_contig134428:1266..13711622929798.7579212-CDS-H-elongata_contig134428:1266..1371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134428 1267..1371 +
1691679161.843901-CDS-H-elongata_contig134428:1266..13711691679161.843901-CDS-H-elongata_contig134428:1266..1371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134428 1267..1371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134428.2443.1prot_H-elongata_contig134428.2443.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134428 1267..1371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134428.2443.1

>prot_H-elongata_contig134428.2443.1 ID=prot_H-elongata_contig134428.2443.1|Name=mRNA_H-elongata_contig134428.2443.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=35bp
KLLGRYTTWITEGWRVLLWSEPSAKLFWEMLCMYH
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mRNA from alignment at H-elongata_contig134428:1267..1371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134428.2443.1 ID=mRNA_H-elongata_contig134428.2443.1|Name=mRNA_H-elongata_contig134428.2443.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=105bp|location=Sequence derived from alignment at H-elongata_contig134428:1267..1371+ (Himanthalia elongata Himel1 dioecious)
AAACTTTTGGGCAGGTACACGACGTGGATCACGGAGGGATGGCGCGTGTT
GCTGTGGTCGGAACCGTCGGCAAAGCTGTTCTGGGAGATGCTGTGCATGT
ATCAC
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Coding sequence (CDS) from alignment at H-elongata_contig134428:1267..1371+

>mRNA_H-elongata_contig134428.2443.1 ID=mRNA_H-elongata_contig134428.2443.1|Name=mRNA_H-elongata_contig134428.2443.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at H-elongata_contig134428:1267..1371+ (Himanthalia elongata Himel1 dioecious)
AAACTTTTGGGCAGGTACACGACGTGGATCACGGAGGGATGGCGCGTGTT
GCTGTGGTCGGAACCGTCGGCAAAGCTGTTCTGGGAGATGCTGTGCATGT
ATCACAAACTTTTGGGCAGGTACACGACGTGGATCACGGAGGGATGGCGC
GTGTTGCTGTGGTCGGAACCGTCGGCAAAGCTGTTCTGGGAGATGCTGTG
CATGTATCAC
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