mRNA_H-elongata_contig134273.2431.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134273.2431.1
Unique NamemRNA_H-elongata_contig134273.2431.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: Q2R5J0_ORYSJ (Retrotransposon protein, putative, Ty1-copia sub-class n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2R5J0_ORYSJ)

HSP 1 Score: 105 bits (261), Expect = 2.490e-23
Identity = 68/171 (39.77%), Postives = 99/171 (57.89%), Query Frame = 1
Query:    1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQGSK-----------------TSIRMVLGMIAALGWEARQLDVDMAYLEAEVEDIYVELPEAYRDSRRQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLV 456
            W+VVERP G   +G + VFK+K+  DG IEKYK RLVA+G                   T+IR++L + A+ G    Q+DV  A+L  E+E+IY++ P+ Y    R+  V  L K++YGL  A   W +KF I L + GF  ++AD CV+ R   G   V++ +YVDD+L+
Sbjct:  858 WEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEIYMDQPDGYVLEGREGMVCKLLKSLYGLKQAPKQWHEKFDITLTSAGFVVNEADKCVYYR-YGGGEGVILCLYVDDILI 1027          
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM)

HSP 1 Score: 103 bits (257), Expect = 8.630e-23
Identity = 59/169 (34.91%), Postives = 93/169 (55.03%), Query Frame = 1
Query:    1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQGSKT-----------------SIRMVLGMIAALGWEARQLDVDMAYLEAEVED-IYVELPEAYRDSRRQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLL 453
            W++ E  + + ++G+R VF +K D  G++ +YK RLVAQG                    ++R  + + A   WE RQ+D+  AYL  E+E+ I++E PE + D   +V  LK  +YGL  AG +W KK   +L   GF R+ ADPCV+     G + + + V+VDD++
Sbjct:  887 WELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKITI-LTVWVDDII 1054          
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: A0A392MGQ0_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MGQ0_9FABA)

HSP 1 Score: 102 bits (253), Expect = 1.960e-22
Identity = 63/171 (36.84%), Postives = 92/171 (53.80%), Query Frame = 1
Query:    1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQG-----------------SKTSIRMVLGMIAALGWEARQLDVDMAYLEAEV-EDIYVELPEAYR-DSRRQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLV 456
            W++   PKGK  +G R V+K K    G +EKYK RLVA+G                   T++R +L +  A GWE  Q+DV  A+L  E+ E++Y+E+P  Y+   +  V  L+K++YGL  A   W  K    L   GFQ  +AD  +F    HG   +V+++YVDDL+V
Sbjct:  220 WEMSRLPKGKKAVGCRWVYKVKYKSTGEVEKYKARLVAKGYTQVEGDDFNETFAPVAKMTTVRCLLTVAVAKGWELHQMDVSNAFLHGELDEEVYMEVPPGYKVPDKEMVCRLRKSLYGLRQASRNWYSKLSQALVKYGFQECEADHSLFTY-SHGSTFIVVLIYVDDLVV 389          
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 102 bits (253), Expect = 2.110e-22
Identity = 61/171 (35.67%), Postives = 96/171 (56.14%), Query Frame = 1
Query:    1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQG-----------------SKTSIRMVLGMIAALGWEARQLDVDMAYLEAEVED-IYVELPEAYRDSRRQ-VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLV 456
            WQ+ + P G+  +G + +FKRK+D DG + +YK RLVAQG                  + + R++L + +  G   +  DV  AYL  E+E+ I++  P  Y D  R  V  L+K++YGL  AG +W KKF   L+   FQ+S+ DPC++ R  +G     +V+YVDD+++
Sbjct:   26 WQLTDLPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGYEDENRDAVCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVR-RNGKGYTYLVIYVDDMVI 195          
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: A0A7D9HXK4_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HXK4_PARCT)

HSP 1 Score: 102 bits (254), Expect = 2.130e-22
Identity = 59/173 (34.10%), Postives = 100/173 (57.80%), Query Frame = 1
Query:    1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQG-----------------SKTSIRMVLGMIAALGWEARQLDVDMAYLEAEVEDIYVELPEAY--RDSRRQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRIL---HGVVVVVIVVYVDDLL 453
            W++V  PKGK V+G++ VFK K D +G +++YK RLVAQG                   T+IR +L +  A  WE  Q+DV  A+L+  +E+IY+  P+ Y  ++    V  LKK++YGL  +   W       L++ G+++ ++DPC++ + +   +GV+++ I  +VDD+L
Sbjct:  755 WELVSLPKGKNVVGSKWVFKVKRDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNNAIDTFLKSSGYKQMESDPCLYMKSIRDQNGVIILSI--HVDDIL 925          
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: A0A177TV96_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TV96_9BASI)

HSP 1 Score: 102 bits (254), Expect = 2.170e-22
Identity = 60/170 (35.29%), Postives = 98/170 (57.65%), Query Frame = 1
Query:    1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQGSK-----------------TSIRMVLGMIAALGWEARQLDVDMAYLEAEV-EDIYVELPEAYRDSRRQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLV 456
            W++VE PKG+ V+G+R V+K K+D DGR  +YK RLVAQG                   ++IR+++ +  AL      +D+  AYL  ++ E++Y++ P  Y D   +V LL++A+YGL  AG  W      +L + G+ + Q++PC+F R       V++ VYVDD+++
Sbjct:  725 WELVELPKGRDVVGSRWVYKLKLDRDGRASRYKGRLVAQGFTQRDGIDFSDTFAPVARLSTIRIIISLALALSLNLGSIDIKTAYLNGKLQEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAGRAWFDTLKGKLLSAGYTQIQSEPCLFVR-FGDAGPVILAVYVDDIVI 893          
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: UPI00053AD58B (uncharacterized protein LOC104704907 n=2 Tax=Camelina sativa TaxID=90675 RepID=UPI00053AD58B)

HSP 1 Score: 100 bits (250), Expect = 7.360e-22
Identity = 60/176 (34.09%), Postives = 97/176 (55.11%), Query Frame = 1
Query:    1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQG-----------------SKTSIRMVLGMIAALGWEARQLDVDMAYLEAEV-EDIYVELPEAYRDSR------RQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLV 456
            W +   P GK V+G + V+K K   DG +E++K RLVA+G                   TS++M+LG  A LGW   QLD+  A+L  ++ E+IY+ LP  Y  S+        V  L K++YGL  A   W  KF   L++ GF ++ +D  +F ++  G ++++++VYVDD+++
Sbjct:  845 WSICSLPAGKHVIGCKWVYKVKYHSDGTLERHKARLVAKGYTQKEGLDYVDTYSPVAKLTSVKMLLGAAAKLGWSLSQLDISNAFLNGDLDEEIYMRLPPGYASSKGDSLPPNAVCKLNKSLYGLKQASRQWYLKFAETLQSLGFLKNHSDHTLFTKVT-GSILLIVLVYVDDIII 1019          
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: A0A2K3MWZ8_TRIPR (Retroelement pol polyprotein-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MWZ8_TRIPR)

HSP 1 Score: 100 bits (250), Expect = 7.560e-22
Identity = 62/171 (36.26%), Postives = 91/171 (53.22%), Query Frame = 1
Query:    1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQG-----------------SKTSIRMVLGMIAALGWEARQLDVDMAYLEAEV-EDIYVELPEAYR-DSRRQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLV 456
            W++   PKGK  +G R V+K K    G +EKYK RLVA+G                   T++R +L +  A GWE  Q+DV  A+L  E+ E++Y+E+P  YR   +  V  L+K++YGL  A   W  K    L   GF   +AD  +F    HG + + +++YVDDL+V
Sbjct:  953 WEMSRLPKGKKAVGCRWVYKVKYKSTGEVEKYKARLVAKGYTQVEGDDFNETFAPDAKMTTVRCLLTVAVAKGWELHQMDVSNAFLHGELDEEVYMEVPPGYRVPDKEMVCRLRKSLYGLRQASRNWYSKLSQALVKYGFHECEADHSLFTY-SHGSIFIAVLIYVDDLVV 1122          
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: A0A396GW39_MEDTR (Putative RNA-directed DNA polymerase n=2 Tax=Medicago truncatula TaxID=3880 RepID=A0A396GW39_MEDTR)

HSP 1 Score: 100 bits (249), Expect = 1.020e-21
Identity = 58/171 (33.92%), Postives = 101/171 (59.06%), Query Frame = 1
Query:    1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQGSKT-----------------SIRMVLGMIAALGWEARQLDVDMAYLEAEV-EDIYVELPEAYRDSR--RQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLL 453
            W +++ P+G   +G + VFK+KIDMDG++  YK RLVA+G K                  SIR++L + A   +E  Q+DV  A+L   + ED+Y+  PE + D +  ++V  L++++YGL  A   W  +F   ++  GF +++ +PCV++++  G +V  +++YVDD+L
Sbjct:  799 WNLIDAPEGINPIGCKWVFKKKIDMDGKVSTYKARLVAKGFKQIHGVDYDETFSPVAMIKSIRILLAIAAYHDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFGDPKATKKVCKLQRSIYGLKQASRSWNLRFDETVQQYGFIKNEDEPCVYKKV-SGSIVSFLILYVDDIL 968          
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Match: A0A5S6QJY9_TRIMR (Integrase catalytic domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJY9_TRIMR)

HSP 1 Score: 99.8 bits (247), Expect = 1.820e-21
Identity = 61/169 (36.09%), Postives = 92/169 (54.44%), Query Frame = 1
Query:    1 WQVVERPKGKTVLGTRVVFKRKIDMDGRIEKYKCRLVAQG-----------------SKTSIRMVLGMIAALGWEARQLDVDMAYLEAEV-EDIYVELPEAYRDSRRQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLL 453
            W  V+ P+    +G++ VF+RK+D  G +E+YK RLVA+G                 S T IR +L +    GW  R +DV  AYL  ++ E+IY++LPE Y  +  +V  L + +YGL  +G +W +   + LE  GFQR  +  CV+         ++IVVYVDD+L
Sbjct:  346 WVEVDLPEKAPSIGSKWVFRRKLDSTGSVERYKARLVARGFGQKAGIDYSETNAPVVSLTVIRFLLSLSMQFGWHVRHVDVKSAYLYGKLAEEIYMKLPEGYEHTVGKVARLLRPIYGLKQSGRVWNETLTVFLEKLGFQRQWSSSCVYVSSNQ----IIIVVYVDDIL 510          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134273.2431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q2R5J0_ORYSJ2.490e-2339.77Retrotransposon protein, putative, Ty1-copia sub-c... [more]
A0A0C3AKI0_9AGAM8.630e-2334.91Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
A0A392MGQ0_9FABA1.960e-2236.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182GIT5_AEDAL2.110e-2235.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HXK4_PARCT2.130e-2234.10Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A177TV96_9BASI2.170e-2235.29Integrase catalytic domain-containing protein n=1 ... [more]
UPI00053AD58B7.360e-2234.09uncharacterized protein LOC104704907 n=2 Tax=Camel... [more]
A0A2K3MWZ8_TRIPR7.560e-2236.26Retroelement pol polyprotein-like n=1 Tax=Trifoliu... [more]
A0A396GW39_MEDTR1.020e-2133.92Putative RNA-directed DNA polymerase n=2 Tax=Medic... [more]
A0A5S6QJY9_TRIMR1.820e-2136.09Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134273contigH-elongata_contig134273:3..458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.2
Seed ortholog evalue6.9e-08
Seed eggNOG ortholog3712.Bo1g005190.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134273.2431.1prot_H-elongata_contig134273.2431.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134273 132..386 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.7225528-UTR-H-elongata_contig134273:2..1311622929797.7225528-UTR-H-elongata_contig134273:2..131Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig134273 3..131 -
1691679161.4237397-UTR-H-elongata_contig134273:2..1311691679161.4237397-UTR-H-elongata_contig134273:2..131Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig134273 3..131 -
1622929797.7468786-UTR-H-elongata_contig134273:386..4581622929797.7468786-UTR-H-elongata_contig134273:386..458Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig134273 387..458 -
1691679161.4413307-UTR-H-elongata_contig134273:386..4581691679161.4413307-UTR-H-elongata_contig134273:386..458Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig134273 387..458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.7342284-CDS-H-elongata_contig134273:131..3861622929797.7342284-CDS-H-elongata_contig134273:131..386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134273 132..386 -
1691679161.4328008-CDS-H-elongata_contig134273:131..3861691679161.4328008-CDS-H-elongata_contig134273:131..386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134273 132..386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134273.2431.1

>prot_H-elongata_contig134273.2431.1 ID=prot_H-elongata_contig134273.2431.1|Name=mRNA_H-elongata_contig134273.2431.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MDGRIEKYKCRLVAQGSKTSIRMVLGMIAALGWEARQLDVDMAYLEAEVE
DIYVELPEAYRDSRRQVGLLKKAMYGLVHAGLLW*
back to top

mRNA from alignment at H-elongata_contig134273:3..458-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134273.2431.1 ID=mRNA_H-elongata_contig134273.2431.1|Name=mRNA_H-elongata_contig134273.2431.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=456bp|location=Sequence derived from alignment at H-elongata_contig134273:3..458- (Himanthalia elongata Himel1 dioecious)
TGGCAGGTGGTGGAACGCCCAAAAGGGAAGACGGTGTTGGGCACAAGAGT AGTTTTCAAGCGCAAAATCGACATGGATGGAAGGATCGAGAAGTATAAAT GTCGTCTCGTGGCGCAGGGTAGCAAGACTAGCATTAGAATGGTACTGGGC ATGATCGCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGACGTCGACATGGC CTACCTGGAGGCCGAAGTGGAGGATATCTACGTTGAGCTCCCGGAGGCAT ACCGTGACTCCAGGAGGCAAGTCGGCCTACTAAAGAAGGCAATGTACGGA CTCGTCCACGCCGGGCTGCTGTGGTAAAAAAAGTTCGGGATCGAGCTCGA GGCGAAGGGTTTCCAGAGATCTCAAGCCGACCCATGCGTGTTCCGGCGGA TTCTCCACGGGGTAGTGGTAGTCGTCATTGTGGTCTACGTCGACGACCTG CTGGTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig134273:3..458-

>mRNA_H-elongata_contig134273.2431.1 ID=mRNA_H-elongata_contig134273.2431.1|Name=mRNA_H-elongata_contig134273.2431.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig134273:3..458- (Himanthalia elongata Himel1 dioecious)
ATGGATGGAAGGATCGAGAAGTATAAATGTCGTCTCGTGGCGCAGGGTAG
CAAGACTAGCATTAGAATGGTACTGGGCATGATCGCGGCTCTCGGCTGGG
AGGCGCGGCAGCTGGACGTCGACATGGCCTACCTGGAGGCCGAAGTGGAG
GATATCTACGTTGAGCTCCCGGAGGCATACCGTGACTCCAGGAGGCAAGT
CGGCCTACTAAAGAAGGCAATGTACGGACTCGTCCACGCCGGGCTGCTGT
GGTAAATGGATGGAAGGATCGAGAAGTATAAATGTCGTCTCGTGGCGCAG
GGTAGCAAGACTAGCATTAGAATGGTACTGGGCATGATCGCGGCTCTCGG
CTGGGAGGCGCGGCAGCTGGACGTCGACATGGCCTACCTGGAGGCCGAAG
TGGAGGATATCTACGTTGAGCTCCCGGAGGCATACCGTGACTCCAGGAGG
CAAGTCGGCCTACTAAAGAAGGCAATGTACGGACTCGTCCACGCCGGGCT
GCTGTGGTAA
back to top