mRNA_H-elongata_contig133624.2388.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133624.2388.1
Unique NamemRNA_H-elongata_contig133624.2388.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig133624.2388.1 vs. uniprot
Match: D7G4I4_ECTSI (Histone H3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4I4_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 1.020e-69
Identity = 119/121 (98.35%), Postives = 119/121 (98.35%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 363
            MARTKQTARKSTGGKAPRKQLATKAA  PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAA-PPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 120
[Close]
BLAST of mRNA_H-elongata_contig133624.2388.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 211 bits (536), Expect = 2.020e-68
Identity = 120/136 (88.24%), Postives = 121/136 (88.97%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARK---------------PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 363
            MARTKQTARKSTGGKAPRKQLATKAARK               PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-elongata_contig133624.2388.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 211 bits (536), Expect = 2.020e-68
Identity = 120/136 (88.24%), Postives = 121/136 (88.97%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARK---------------PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 363
            MARTKQTARKSTGGKAPRKQLATKAARK               PGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-elongata_contig133624.2388.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 209 bits (533), Expect = 7.030e-68
Identity = 119/136 (87.50%), Postives = 121/136 (88.97%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARK---------------PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 363
            MARTKQTARKSTGGKAPRKQLATKAARK               PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
[Close]
BLAST of mRNA_H-elongata_contig133624.2388.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 209 bits (533), Expect = 9.150e-68
Identity = 119/136 (87.50%), Postives = 121/136 (88.97%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARK---------------PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 363
            MARTKQTARKSTGGKAPRKQLATKAARK               PGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_H-elongata_contig133624.2388.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 211 bits (536), Expect = 2.190e-67
Identity = 120/136 (88.24%), Postives = 121/136 (88.97%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARK---------------PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 363
            MARTKQTARKSTGGKAPRKQLATKAARK               PGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
[Close]
BLAST of mRNA_H-elongata_contig133624.2388.1 vs. uniprot
Match: A0A3R7LZR1_PENVA (Histone H3 n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7LZR1_PENVA)

HSP 1 Score: 207 bits (527), Expect = 3.650e-67
Identity = 115/128 (89.84%), Postives = 120/128 (93.75%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAAR-------KPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 363
            MARTKQTARKSTGGKAPRKQLATKAAR       +PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 128
[Close]
BLAST of mRNA_H-elongata_contig133624.2388.1 vs. uniprot
Match: UPI0008163789 (LOW QUALITY PROTEIN: histone H3-like n=1 Tax=Corvus brachyrhynchos TaxID=85066 RepID=UPI0008163789)

HSP 1 Score: 207 bits (527), Expect = 4.030e-67
Identity = 116/131 (88.55%), Postives = 120/131 (91.60%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARK----------PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 363
            MARTKQTARKSTGGKAPRKQLATKAARK          PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAAAPXDRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 131
[Close]
BLAST of mRNA_H-elongata_contig133624.2388.1 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 4.750e-67
Identity = 119/136 (87.50%), Postives = 120/136 (88.24%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARK---------------PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 363
            MARTKQTARKSTG +APRKQLATKAARK               PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-elongata_contig133624.2388.1 vs. uniprot
Match: A0A6V7U9E7_9BILA (Histone H3 n=1 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7U9E7_9BILA)

HSP 1 Score: 207 bits (526), Expect = 4.860e-67
Identity = 116/126 (92.06%), Postives = 119/126 (94.44%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKP-----GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 363
            MARTKQTARKSTGGKAPRKQLATKAARK      GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERT 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133624.2388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4I4_ECTSI1.020e-6998.35Histone H3 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
W4GZ05_9STRA2.020e-6888.24Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A1Z5K8H0_FISSO2.020e-6888.24Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A6V1P6C6_HETAK7.030e-6887.50Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A7S1BJN3_9STRA9.150e-6887.50Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
K0S7I6_THAOC2.190e-6788.24Histone domain-containing protein n=8 Tax=Bacillar... [more]
A0A3R7LZR1_PENVA3.650e-6789.84Histone H3 n=1 Tax=Penaeus vannamei TaxID=6689 Rep... [more]
UPI00081637894.030e-6788.55LOW QUALITY PROTEIN: histone H3-like n=1 Tax=Corvu... [more]
D7G4I9_ECTSI4.750e-6787.50Similar to histone H3.2 n=2 Tax=PX clade TaxID=569... [more]
A0A6V7U9E7_9BILA4.860e-6792.06Histone H3 n=1 Tax=Meloidogyne enterolobii TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133624contigH-elongata_contig133624:1163..1573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.8
Seed ortholog evalue1.4e-54
Seed eggNOG ortholog2880.D7G4I4
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size366
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929793.7970042-CDS-H-elongata_contig133624:1162..12451622929793.7970042-CDS-H-elongata_contig133624:1162..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133624 1163..1245 +
1691679159.950312-CDS-H-elongata_contig133624:1162..12451691679159.950312-CDS-H-elongata_contig133624:1162..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133624 1163..1245 +
1622929793.8196242-CDS-H-elongata_contig133624:1290..15731622929793.8196242-CDS-H-elongata_contig133624:1290..1573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133624 1291..1573 +
1691679159.9647923-CDS-H-elongata_contig133624:1290..15731691679159.9647923-CDS-H-elongata_contig133624:1290..1573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133624 1291..1573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133624.2388.1prot_H-elongata_contig133624.2388.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133624 1163..1573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133624.2388.1

>prot_H-elongata_contig133624.2388.1 ID=prot_H-elongata_contig133624.2388.1|Name=mRNA_H-elongata_contig133624.2388.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MARTKQTARKSTGGKAPRKQLATKAARKPGTVALREIRRYQKSTELLIRK
LPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHA
KRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at H-elongata_contig133624:1163..1573+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133624.2388.1 ID=mRNA_H-elongata_contig133624.2388.1|Name=mRNA_H-elongata_contig133624.2388.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=411bp|location=Sequence derived from alignment at H-elongata_contig133624:1163..1573+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCGCACGAAGCAGACCGCTCGTAAGTCTACCGGAGGCAAGGCTCC
GCGCAAGCAGCTGGCAACCAAGGCTGCGCGCAAGTCTGCCCCCGCCACAG
GTGGTGTGAAGAAGCCCCACCGCTACAGACCGGGCACCGTGGCCTTGCGT
GAAATCCGCCGTTATCAGAAGTCAACTGAGCTCCTAATTCGTAAGCTGCC
CTTCCAGCGCCTGGTGCGCGAAATCGCCCAGGACTTCAAGAGTGACCTAC
GTTTCCAGGGCTCCGCCGTGTTGGCCCTGCAGGAGGCCGCCGAGGCCTAC
CTTGTTGGTCTGTTCGAAGACACCAACCTGTGCGCCATCCACGCCAAGCG
AGTAACCATCATGCCCAAGGACATCCAGCTGGCCAGGCGCATTCGTGGAG
AGCGCTCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig133624:1163..1573+

>mRNA_H-elongata_contig133624.2388.1 ID=mRNA_H-elongata_contig133624.2388.1|Name=mRNA_H-elongata_contig133624.2388.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig133624:1163..1573+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCGCACGAAGCAGACCGCTCGTAAGTCTACCGGAGGCAAGGCTCC
GCGCAAGCAGCTGGCAACCAAGGCTGCGCGCAAATGGCTCGCACGAAGCA
GACCGCTCGTAAGTCTACCGGAGGCAAGGCTCCGCGCAAGCAGCTGGCAA
CCAAGGCTGCGCGCAAACCGGGCACCGTGGCCTTGCGTGAAATCCGCCGT
TATCAGAAGTCAACTGAGCTCCTAATTCGTAAGCTGCCCTTCCAGCGCCT
GGTGCGCGAAATCGCCCAGGACTTCAAGAGTGACCTACGTTTCCAGGGCT
CCGCCGTGTTGGCCCTGCAGGAGGCCGCCGAGGCCTACCTTGTTGGTCTG
TTCGAAGACACCAACCTGTGCGCCATCCACGCCAAGCGAGTAACCATCAT
GCCCAAGGACATCCAGCTGGCCAGGCGCATTCGTGGAGAGCGCTCGTAGA
CCGGGCACCGTGGCCTTGCGTGAAATCCGCCGTTATCAGAAGTCAACTGA
GCTCCTAATTCGTAAGCTGCCCTTCCAGCGCCTGGTGCGCGAAATCGCCC
AGGACTTCAAGAGTGACCTACGTTTCCAGGGCTCCGCCGTGTTGGCCCTG
CAGGAGGCCGCCGAGGCCTACCTTGTTGGTCTGTTCGAAGACACCAACCT
GTGCGCCATCCACGCCAAGCGAGTAACCATCATGCCCAAGGACATCCAGC
TGGCCAGGCGCATTCGTGGAGAGCGCTCGTAG
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