mRNA_H-elongata_contig1335.2378.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1335.2378.1
Unique NamemRNA_H-elongata_contig1335.2378.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1335.2378.1 vs. uniprot
Match: D8LP12_ECTSI (Dynein regulatory complex protein 10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP12_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 4.550e-54
Identity = 96/135 (71.11%), Postives = 114/135 (84.44%), Query Frame = 1 
Query:    4 RSLTERIERLSKETGEAVELHQHEEMGSRKKKTKMETELAVTVAKYDSEMTAKSAQIDDIKGKIEKELQELVVLQDHFDRVDASGRQEWAEEDILAKVKMKVARGIAVVDGAATKLQSLFRGNRDRVEYYKAKKK 408
            R+LTERIERL+KETGEA ELHQ EE  SRKKK K+E EL  TV KYD +MTAK+AQI++IK K+E+E QEL +LQDHFDRVDASGRQ+WAEE+ LA V+ KVAR + +VDGAATK+Q++FRG RDR EY KAKKK
Sbjct:  296 RALTERIERLAKETGEAAELHQQEETASRKKKAKVEVELTATVGKYDRDMTAKTAQIEEIKAKMEEERQELAILQDHFDRVDASGRQQWAEEETLAVVRGKVARAMGIVDGAATKIQAMFRGGRDRAEYQKAKKK 430
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BLAST of mRNA_H-elongata_contig1335.2378.1 vs. uniprot
Match: UPI001BF71AED (dynein regulatory complex protein 10 n=2 Tax=Alosa TaxID=34772 RepID=UPI001BF71AED)

HSP 1 Score: 57.0 bits (136), Expect = 1.340e-6
Identity = 35/102 (34.31%), Postives = 57/102 (55.88%), Query Frame = 1 
Query:   76 EMGSRKKKTKMETELAVTVAKYDSEMTAKSAQIDDIKGKIEKELQELVVLQDHFDRVDASGRQEWAEEDILAKVKMKVARGIAVVDGAATKLQSLFRGNRDR 381
            EMG RK+K K+ETE+   + KYDS+M  K  +++D+    E+E +EL  L++H+  ++    Q   E  +  +      R   V+  AAT +Q+ +RG R R
Sbjct:  290 EMGLRKRKYKVETEIENWIQKYDSDMGEKQTELEDMAEVFEEEKEELRELEEHYSMLEVEYTQVMEERRLEQQXXXXXERAREVMGRAATVIQAYWRGFRVR 391
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1335.2378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LP12_ECTSI4.550e-5471.11Dynein regulatory complex protein 10 n=2 Tax=Ectoc... [more]
UPI001BF71AED1.340e-634.31dynein regulatory complex protein 10 n=2 Tax=Alosa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1335contigH-elongata_contig1335:14452..15517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.4
Seed ortholog evalue9.9e-45
Seed eggNOG ortholog2880.D8LP12
Preferred nameIQCD
EggNOG free text desc.Short calmodulin-binding motif containing conserved Ile and Gln residues.
EggNOG OGs28IFF@1,2QQS9@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_007000.1
Exons2
Model size465
Cds size465
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929791.7520478-CDS-H-elongata_contig1335:14451..146371622929791.7520478-CDS-H-elongata_contig1335:14451..14637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1335 14452..14637 +
1691679159.1928632-CDS-H-elongata_contig1335:14451..146371691679159.1928632-CDS-H-elongata_contig1335:14451..14637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1335 14452..14637 +
1622929791.770005-CDS-H-elongata_contig1335:15238..155171622929791.770005-CDS-H-elongata_contig1335:15238..15517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1335 15239..15517 +
1691679159.2046459-CDS-H-elongata_contig1335:15238..155171691679159.2046459-CDS-H-elongata_contig1335:15238..15517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1335 15239..15517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1335.2378.1prot_H-elongata_contig1335.2378.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1335 14452..15517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1335.2378.1

>prot_H-elongata_contig1335.2378.1 ID=prot_H-elongata_contig1335.2378.1|Name=mRNA_H-elongata_contig1335.2378.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp
IRSLTERIERLSKETGEAVELHQHEEMGSRKKKTKMETELAVTVAKYDSE
MTAKSAQIDDIKGKIEKELQELVVLQDHFDRVDASGRQEWAEEDILAKVK
MKVARGIAVVDGAATKLQSLFRGNRDRVEYYKAKKKAKKGAKKGKKGKKK
GKKK*
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mRNA from alignment at H-elongata_contig1335:14452..15517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1335.2378.1 ID=mRNA_H-elongata_contig1335.2378.1|Name=mRNA_H-elongata_contig1335.2378.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1066bp|location=Sequence derived from alignment at H-elongata_contig1335:14452..15517+ (Himanthalia elongata Himel1 dioecious)
ATTAGATCACTCACCGAACGCATCGAGCGTCTGTCGAAGGAGACGGGAGA
GGCGGTGGAGTTGCACCAACATGAAGAGATGGGATCTCGCAAAAAGAAGA
CCAAGATGGAGACGGAGTTGGCGGTGACGGTGGCAAAATACGATAGTGAA
ATGACAGCCAAATCCGCTCAGATAGACGATATCAAGGTGATTGAAGAACG
GTGGGCAATCTCTTGAACTTTTGCCGGGGCGGCATTCAATGAGTTTTGCT
CGAGGCAAGGACATGCGATCTCATGTGCACCGCTGTGTAGTCTGTACTCG
TCATATCACGCCTTTAATACTATTTTCTTCGGGAGAGAAGAGCTTGCTTT
TCGCCTGTGAAACTTCCGCCTTATTTGGTTGTAGTGCACGGCACCGGAAT
CCGCACTCTAGCTTCTCAGCCGAAATTTTAGCATCCAAACATTACCTTCC
CAACATCCAAGGAGAAACGCACTGACGACGGGTCGAGATTTGTTTTTTCT
AAGAGTTTAGCGCAATGCACTCGCATCAAAACTAAGAAAATCAGAAATAT
CGAGAAGTAGCGAAATCTTGACTCTGTTACTATTAATAGTTGAGCTCAAA
CCAGTAAACAAATGGGTTGAAATTAATATAAAGTAGTTGCCGTCACGGAC
CTTCCGCGTTAAGGTGTTGACTGTTTTTGGTCAGGTAAAACATAACCTCT
TTTACATGTCTTATCCCCCTCTCGCTCGCCCATTTCGCCCTCGCGATAAC
TGCACCCAAAACCCCACCACTATACTGATAAAACTAGGGCAAAATAGAGA
AAGAACTCCAAGAATTGGTGGTGCTGCAGGACCACTTTGACCGAGTCGAT
GCCAGCGGTCGGCAAGAATGGGCGGAAGAGGATATTCTCGCCAAGGTCAA
GATGAAGGTGGCGCGAGGGATTGCAGTGGTCGATGGAGCCGCTACGAAGC
TGCAGTCATTATTTCGGGGGAACAGAGACCGCGTGGAGTATTATAAGGCA
AAGAAAAAGGCAAAAAAAGGGGCGAAGAAGGGCAAAAAGGGTAAAAAGAA
GGGTAAAAAGAAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig1335:14452..15517+

>mRNA_H-elongata_contig1335.2378.1 ID=mRNA_H-elongata_contig1335.2378.1|Name=mRNA_H-elongata_contig1335.2378.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at H-elongata_contig1335:14452..15517+ (Himanthalia elongata Himel1 dioecious)
ATTAGATCACTCACCGAACGCATCGAGCGTCTGTCGAAGGAGACGGGAGA
GGCGGTGGAGTTGCACCAACATGAAGAGATGGGATCTCGCAAAAAGAAGA
CCAAGATGGAGACGGAGTTGGCGGTGACGGTGGCAAAATACGATAGTGAA
ATGACAGCCAAATCCGCTCAGATAGACGATATCAAGATTAGATCACTCAC
CGAACGCATCGAGCGTCTGTCGAAGGAGACGGGAGAGGCGGTGGAGTTGC
ACCAACATGAAGAGATGGGATCTCGCAAAAAGAAGACCAAGATGGAGACG
GAGTTGGCGGTGACGGTGGCAAAATACGATAGTGAAATGACAGCCAAATC
CGCTCAGATAGACGATATCAAGGGCAAAATAGAGAAAGAACTCCAAGAAT
TGGTGGTGCTGCAGGACCACTTTGACCGAGTCGATGCCAGCGGTCGGCAA
GAATGGGCGGAAGAGGATATTCTCGCCAAGGTCAAGATGAAGGTGGCGCG
AGGGATTGCAGTGGTCGATGGAGCCGCTACGAAGCTGCAGTCATTATTTC
GGGGGAACAGAGACCGCGTGGAGTATTATAAGGCAAAGAAAAAGGCAAAA
AAAGGGGCGAAGAAGGGCAAAAAGGGTAAAAAGAAGGGTAAAAAGAAGTA
GGGCAAAATAGAGAAAGAACTCCAAGAATTGGTGGTGCTGCAGGACCACT
TTGACCGAGTCGATGCCAGCGGTCGGCAAGAATGGGCGGAAGAGGATATT
CTCGCCAAGGTCAAGATGAAGGTGGCGCGAGGGATTGCAGTGGTCGATGG
AGCCGCTACGAAGCTGCAGTCATTATTTCGGGGGAACAGAGACCGCGTGG
AGTATTATAAGGCAAAGAAAAAGGCAAAAAAAGGGGCGAAGAAGGGCAAA
AAGGGTAAAAAGAAGGGTAAAAAGAAGTAG
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