mRNA_H-elongata_contig13331.2366.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13331.2366.1
Unique NamemRNA_H-elongata_contig13331.2366.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13331.2366.1 vs. uniprot
Match: D8LFE3_ECTSI (Abortive infection protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFE3_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 3.090e-16
Identity = 43/60 (71.67%), Postives = 54/60 (90.00%), Query Frame = 2 
Query:  290 RELQLGLRTFGKFASNEKTRQIMQKADLDESNALTFDEWMRLLALNYSALFKAIKSEKLG 469
            +ELQLGLRTFGKFAS E+TRQIM++ADLD++NALTFDEW+RLLALNYSAL +    +++G
Sbjct:  331 KELQLGLRTFGKFASAEETRQIMREADLDKNNALTFDEWVRLLALNYSALLQPKAGKQIG 390
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13331.2366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFE3_ECTSI3.090e-1671.67Abortive infection protein n=2 Tax=Ectocarpus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13331contigH-elongata_contig13331:2803..4461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue2.9e-16
Seed eggNOG ortholog2880.D8LFE3
EggNOG free text desc.CAAX protease self-immunity
EggNOG OGs2E087@1,2S7PH@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1257
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13331.2366.1prot_H-elongata_contig13331.2366.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13331 3573..4280 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929790.9515367-UTR-H-elongata_contig13331:2802..35721622929790.9515367-UTR-H-elongata_contig13331:2802..3572Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13331 2803..3572 -
1691679158.8517506-UTR-H-elongata_contig13331:2802..35721691679158.8517506-UTR-H-elongata_contig13331:2802..3572Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13331 2803..3572 -
1622929790.9975321-UTR-H-elongata_contig13331:4280..44611622929790.9975321-UTR-H-elongata_contig13331:4280..4461Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13331 4281..4461 -
1691679158.8935661-UTR-H-elongata_contig13331:4280..44611691679158.8935661-UTR-H-elongata_contig13331:4280..4461Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13331 4281..4461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929790.9693403-CDS-H-elongata_contig13331:3572..36951622929790.9693403-CDS-H-elongata_contig13331:3572..3695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13331 3573..3695 -
1691679158.8638117-CDS-H-elongata_contig13331:3572..36951691679158.8638117-CDS-H-elongata_contig13331:3572..3695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13331 3573..3695 -
1622929790.9811068-CDS-H-elongata_contig13331:4097..42801622929790.9811068-CDS-H-elongata_contig13331:4097..4280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13331 4098..4280 -
1691679158.8748176-CDS-H-elongata_contig13331:4097..42801691679158.8748176-CDS-H-elongata_contig13331:4097..4280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13331 4098..4280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13331.2366.1

>prot_H-elongata_contig13331.2366.1 ID=prot_H-elongata_contig13331.2366.1|Name=mRNA_H-elongata_contig13331.2366.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MFVRCLHDHKLFLSPYLPGSEENVSVCCRPVSLSLNRELQLGLRTFGKFA
SNEKTRQIMQKADLDESNALTFDEWMRLLALNYSALFKAIKSEKLGNELA
P*
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mRNA from alignment at H-elongata_contig13331:2803..4461-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13331.2366.1 ID=mRNA_H-elongata_contig13331.2366.1|Name=mRNA_H-elongata_contig13331.2366.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1659bp|location=Sequence derived from alignment at H-elongata_contig13331:2803..4461- (Himanthalia elongata Himel1 dioecious)
TGACGGAAGAGGTTTCCAACGGGGATGTTCTTAGTCGTAGTCTGGTGCAA
CCTTATACCCAGTGGAAGCATATGGCTTAAGCACTCGGTTTGGGCTATCT
TTAGCGAAAGCCCTGCTACCAATGTGCCACCAAACATGTTGCATAAGACG
CCCTATAAAAGCTTCCATAGACTAGTGAAACATGTTTGTGCGATGCCTCC
ATGATCATAAGTTGTTTTTATCGCCCTATTTGCCGGGCTCGGAAGAAAAT
GTGTCTGTCTGCTGTCGACCTGTTTCTTTGTCGTTAAATAGGGAGCTTCA
GCTAGGGCTTCGCACGTTCGGGAAGTTCGCTTCAAACGAAAAGACGCGAC
AGATCATGCAGAAGGTAAGTGTTGGACATGGCTCAAGCTAGCAGGAGTGA
TTCTATTAATAGTTCTGCCAGTCGTCTGAATGTTCCTGTTGGTTTGTTTT
TTTGTAAAGCAGAAATATTCCCACCCGTCCGACTCGTAACCGTTTTGGCG
GAGGCTCCCCAAAATACATGTGTTTTTTAGAAGAAAAAAAGCTCCCAGTA
AACCCAAGTTTGACACGCATATTTTCGGACGGAAGACCTATATGTGCAGA
TTATATTGGCTGATGATAAAATTTTGCCGCTTATTAAATTTCGTCTAATG
TATACCTCTCGTGACTCCTACCTGTGGAAATGCATTTCTCTAGTTTGTAG
CGGAAGAGAAGCTTGTGCGCGCATTTACGCCCTCCCTTATCCTGATTTAT
TATGCTAAAAACACAGGCAGACCTAGACGAAAGCAACGCGCTGACGTTCG
ACGAGTGGATGCGTCTCTTGGCCCTCAACTACAGCGCTCTGTTCAAGGCC
ATCAAGAGCGAAAAGCTCGGAAACGAACTCGCCCCTTAAGGCGCTATGGG
CAAGATTTGAAAAAACAAACAAAAAATCTCAATATAACAATGATACTGTC
ACGCGGCGCAAGATCTCGACCCAAGGAGAGGGCGTCAAAATGGCCCGTTT
TCCCAAGGCGTCCAGATATACACAGCACTGGTGTTTAGGTGAATATATTA
TTTTCCCCCCAAGGCACCATAAATATCTCCAAAGGTACATGCGCGGAGGT
ATATTAATTGTTCATTGTCATCAGATGTGAAGGTTGGGCGAGTCACGTTT
TGACCGGGATACGTTTCCCGCAGAACCATTCTCACACATTGGCTCGGATG
CCCTGAGGGTGGTGGTTATGAATTGTGTTCGCATGGAACACAGAGCAATT
TGCAGGCCTCTAGAAGGCGTGCGTTTGCGTATTGAGATATATCCCCATGG
CCCGGGTGTTCGCGGCCACTCCTTTCGGAATAGTTTCTAACGGTGGCAGT
GCAGGGTCGTTGCAAAGGCACCCTATACTTAGCATCCCTTGGTTTTGGCG
TGCATATCTTCCCAAGGAGGCGCTCTGTCAATTTTTCAGAGGTGGCGAGG
GATTGTCGCCGTCAAAAATTGAAAAACTCTAGAGGGACCAATTCTTGCTA
TTTGTACCCATGTTGCTAGCGCCGAACAGATCCATAATAGAACGATTTAA
CGAACGGCGTAATCCTAAACGTATCCTTTGGAGCGCAACCGTATCTGAGG
GAGAAATATGCGCTGTCTCAAACTTACAGTAAGAACCGCACGAAAAGCCA
AGTCACGAG
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Coding sequence (CDS) from alignment at H-elongata_contig13331:2803..4461-

>mRNA_H-elongata_contig13331.2366.1 ID=mRNA_H-elongata_contig13331.2366.1|Name=mRNA_H-elongata_contig13331.2366.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig13331:2803..4461- (Himanthalia elongata Himel1 dioecious)
ATGTTTGTGCGATGCCTCCATGATCATAAGTTGTTTTTATCGCCCTATTT
GCCGGGCTCGGAAGAAAATGTGTCTGTCTGCTGTCGACCTGTTTCTTTGT
CGTTAAATAGGGAGCTTCAGCTAGGGCTTCGCACGTTCGGGAAGTTCGCT
TCAAACGAAAAGACGCGACAGATCATGCAGAAGATGTTTGTGCGATGCCT
CCATGATCATAAGTTGTTTTTATCGCCCTATTTGCCGGGCTCGGAAGAAA
ATGTGTCTGTCTGCTGTCGACCTGTTTCTTTGTCGTTAAATAGGGAGCTT
CAGCTAGGGCTTCGCACGTTCGGGAAGTTCGCTTCAAACGAAAAGACGCG
ACAGATCATGCAGAAGGCAGACCTAGACGAAAGCAACGCGCTGACGTTCG
ACGAGTGGATGCGTCTCTTGGCCCTCAACTACAGCGCTCTGTTCAAGGCC
ATCAAGAGCGAAAAGCTCGGAAACGAACTCGCCCCTTAAGCAGACCTAGA
CGAAAGCAACGCGCTGACGTTCGACGAGTGGATGCGTCTCTTGGCCCTCA
ACTACAGCGCTCTGTTCAAGGCCATCAAGAGCGAAAAGCTCGGAAACGAA
CTCGCCCCTTAA
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