mRNA_H-elongata_contig133242.2362.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133242.2362.1
Unique NamemRNA_H-elongata_contig133242.2362.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig133242.2362.1 vs. uniprot
Match: D8LCY7_ECTSI (Long-chain-fatty-acid--CoA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY7_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 7.830e-70
Identity = 108/151 (71.52%), Postives = 123/151 (81.46%), Query Frame = 1 
Query:    1 YGQTETAAGATMGQKDDFSAGHVGGPFSCTEICLKDVPEMGYRHTDTWHGGDPRDAEGGGIPCDGRGEVCFRGGNIFVGYYKKEDKTREAFDEDGWLLSGDIGLWTPEGTLKIIDRKKNIFKLSQVQSVIDHE*KEMR*ASKPCACTYVLG 453
            YGQTET AG+TM Q  DFS GHVGGPFSCTEICLKDVPEMGYRHTDTWHGGDPRDA GGG  C+GRGE+CFRG N+FVGYYK ++KTREAFDE+GWL+SGDIG+W  +G LKIIDRKKNIFKLSQ + V   + + +   S   A +YV G
Sbjct:  393 YGQTETTAGSTMTQSGDFSVGHVGGPFSCTEICLKDVPEMGYRHTDTWHGGDPRDAGGGGEACEGRGEICFRGCNVFVGYYKDDEKTREAFDENGWLMSGDIGMWNLDGALKIIDRKKNIFKLSQGEYVAPEKLENIHTQSPLVAQSYVHG 543
[Close]
BLAST of mRNA_H-elongata_contig133242.2362.1 vs. uniprot
Match: A0A835ZFW5_9STRA (Long chain acyl-CoA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW5_9STRA)

HSP 1 Score: 214 bits (546), Expect = 3.520e-62
Identity = 99/151 (65.56%), Postives = 114/151 (75.50%), Query Frame = 1 
Query:    1 YGQTETAAGATMGQKDDFSAGHVGGPFSCTEICLKDVPEMGYRHTDTWHGGDPRDAEGGGIPCDGRGEVCFRGGNIFVGYYKKEDKTREAFDEDGWLLSGDIGLWTPEGTLKIIDRKKNIFKLSQVQSVIDHE*KEMR*ASKPCACTYVLG 453
            YGQTET AGAT+    DFSAGHVGGPF CTEICL DVPEMGY HTD+WHGGDPR+  GGG PC GRGE+CFRG N+F GYYK  +KT EA D DGWL SGDIGLWT +G L+IIDRKKNIFKLSQ + +   + + +   S   A ++V G
Sbjct:  436 YGQTETCAGATITMPGDFSAGHVGGPFPCTEICLMDVPEMGYLHTDSWHGGDPREGGGGGEPCAGRGEICFRGTNVFAGYYKDPEKTAEAIDADGWLHSGDIGLWTADGALRIIDRKKNIFKLSQGEYIAPEKIENVHVQSPLVAQSFVYG 586
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BLAST of mRNA_H-elongata_contig133242.2362.1 vs. uniprot
Match: A0A7S2SDD9_9STRA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDD9_9STRA)

HSP 1 Score: 170 bits (430), Expect = 9.520e-46
Identity = 82/129 (63.57%), Postives = 92/129 (71.32%), Query Frame = 1 
Query:    1 YGQTETAAGATMGQKDDFSAGHVGGPFSCTEICLKDVPEMGYRHTDTWHGGDPRDAEGGGIPCDGRGEVCFRGGNIFVGYYKKEDKTREAFDEDGWLLSGDIGLWTPEGTLKIIDRKKNIFKLSQVQSV 387
            YGQTE  A AT+    DFS+GHVG P  C EI L DVP+MGYRHTDTWHGGD       G+PC GRGE+ +RG   F GYYK  +KT E  D+DGWL SGDIGLWT  G LKIIDRKKNIFKL+Q + V
Sbjct:  413 YGQTEGCAAATITAPGDFSSGHVGPPVPCVEIKLIDVPDMGYRHTDTWHGGDQD-----GMPCVGRGEIVYRGPVAFTGYYKMPEKTAETIDKDGWLYSGDIGLWTLSGNLKIIDRKKNIFKLAQGEYV 536
[Close]
BLAST of mRNA_H-elongata_contig133242.2362.1 vs. uniprot
Match: B8CBL9_THAPS (Long-chain-fatty-acid--CoA ligase n=2 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBL9_THAPS)

HSP 1 Score: 167 bits (424), Expect = 6.650e-45
Identity = 81/130 (62.31%), Postives = 93/130 (71.54%), Query Frame = 1 
Query:    1 YGQTETAAGATMGQKDDF-SAGHVGGPFSCTEICLKDVPEMGYRHTDTWHGGDPRDAEGGGIPCDGRGEVCFRGGNIFVGYYKKEDKTREAFDEDGWLLSGDIGLWTPEGTLKIIDRKKNIFKLSQVQSV 387
            YGQTE AA AT+   DD  S GHVGGP  C EI L+DVPEMGY  TDT H G+P         C GRGE+C RG N+F GYYK E+KT+E  DE+GWL SGD+GLW P+G LKIIDRKKNIFKL+Q + V
Sbjct:  419 YGQTEGAAAATISHPDDIASVGHVGGPTDCVEIVLEDVPEMGYLSTDTSHNGEP---------CRGRGEICIRGPNVFKGYYKDEEKTKETIDEEGWLHSGDVGLWMPDGQLKIIDRKKNIFKLAQGEYV 539
[Close]
BLAST of mRNA_H-elongata_contig133242.2362.1 vs. uniprot
Match: A0A7S1VYZ7_9STRA (Long-chain-fatty-acid--CoA ligase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VYZ7_9STRA)

HSP 1 Score: 166 bits (420), Expect = 2.550e-44
Identity = 82/130 (63.08%), Postives = 92/130 (70.77%), Query Frame = 1 
Query:    1 YGQTETAAGATMGQKDDF-SAGHVGGPFSCTEICLKDVPEMGYRHTDTWHGGDPRDAEGGGIPCDGRGEVCFRGGNIFVGYYKKEDKTREAFDEDGWLLSGDIGLWTPEGTLKIIDRKKNIFKLSQVQSV 387
            YGQTE  A AT+G KDDF S GHVGGP +  EI L DVPEMGY HTDT H G P         C GRGE+C RG N+F GYYK E+KTRE  DE+GWL SGD+GLWT  G L+IIDRKKNIFKL+  + V
Sbjct:  428 YGQTEGTAAATIGDKDDFASIGHVGGPTAAVEIVLMDVPEMGYLHTDTSHQGQP---------CRGRGEICVRGPNVFKGYYKDEEKTRETIDEEGWLHSGDVGLWTLNGQLRIIDRKKNIFKLANGEYV 548
[Close]
BLAST of mRNA_H-elongata_contig133242.2362.1 vs. uniprot
Match: A0A7S2L9H9_9STRA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L9H9_9STRA)

HSP 1 Score: 165 bits (417), Expect = 6.750e-44
Identity = 84/152 (55.26%), Postives = 99/152 (65.13%), Query Frame = 1 
Query:    1 YGQTETAAGATMGQKDDFSA-GHVGGPFSCTEICLKDVPEMGYRHTDTWHGGDPRDAEGGGIPCDGRGEVCFRGGNIFVGYYKKEDKTREAFDEDGWLLSGDIGLWTPEGTLKIIDRKKNIFKLSQVQSVIDHE*KEMR*ASKPCACTYVLG 453
            YGQTE  A AT+   +D S  GHVGGP  C EI L DVPEMGY HTDT H G+P         C GRGE+  RG  +F GYY  EDKT+E  DEDGWLLSGDIGLWTP+G L+IIDRKKNIFKL+Q + V   + + +   +K     +V G
Sbjct:  421 YGQTEGTAAATLSDLEDMSTVGHVGGPVECVEIVLADVPEMGYMHTDTLHRGEP---------CCGRGEILVRGPAVFKGYYNDEDKTKETVDEDGWLLSGDIGLWTPQGQLQIIDRKKNIFKLAQGEYVAAEKIENVLIQAKLVGQCFVYG 563
[Close]
BLAST of mRNA_H-elongata_contig133242.2362.1 vs. uniprot
Match: A0A7S1ZHK7_TRICV (Long-chain-fatty-acid--CoA ligase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZHK7_TRICV)

HSP 1 Score: 164 bits (414), Expect = 7.100e-44
Identity = 81/130 (62.31%), Postives = 92/130 (70.77%), Query Frame = 1 
Query:    1 YGQTETAAGATMGQKDDF-SAGHVGGPFSCTEICLKDVPEMGYRHTDTWHGGDPRDAEGGGIPCDGRGEVCFRGGNIFVGYYKKEDKTREAFDEDGWLLSGDIGLWTPEGTLKIIDRKKNIFKLSQVQSV 387
            YGQTE  A AT+G  DD  S GHVGGP    EI L DVPEMGY HTDT HGG P         C GRGE+  RG N+F GYYK E+KT+E  +E+GWL+SGD+GLWTP+G L IIDRKKNIFKLSQ + V
Sbjct:  331 YGQTEGTAAATLGADDDMGSIGHVGGPLDHLEILLADVPEMGYLHTDTSHGGRP---------CCGRGEIWIRGPNVFKGYYKDEEKTKETINEEGWLMSGDVGLWTPQGQLMIIDRKKNIFKLSQGEYV 451
[Close]
BLAST of mRNA_H-elongata_contig133242.2362.1 vs. uniprot
Match: A0A7S2MGH8_9STRA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MGH8_9STRA)

HSP 1 Score: 163 bits (412), Expect = 3.380e-43
Identity = 80/130 (61.54%), Postives = 91/130 (70.00%), Query Frame = 1 
Query:    1 YGQTETAAGATMGQKDDF-SAGHVGGPFSCTEICLKDVPEMGYRHTDTWHGGDPRDAEGGGIPCDGRGEVCFRGGNIFVGYYKKEDKTREAFDEDGWLLSGDIGLWTPEGTLKIIDRKKNIFKLSQVQSV 387
            YGQTE  A AT+   DD  S GHVGGP +  EI L DVPEMGY HTDT H G P         C GRGE+C RG N+F GYYK E+KTRE  DE+GWL SGD+GLWTP+G L+IIDRKKNIFKL+  + V
Sbjct:  420 YGQTEGTAAATISHPDDMTSVGHVGGPTNVVEIVLIDVPEMGYLHTDTSHQGKP---------CRGRGEICIRGPNVFKGYYKDEEKTRETIDEEGWLHSGDVGLWTPDGQLRIIDRKKNIFKLANGEYV 540
[Close]
BLAST of mRNA_H-elongata_contig133242.2362.1 vs. uniprot
Match: A0A7S1V9E3_9STRA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V9E3_9STRA)

HSP 1 Score: 160 bits (406), Expect = 6.620e-43
Identity = 86/162 (53.09%), Postives = 98/162 (60.49%), Query Frame = 1 
Query:    1 YGQTETAAGATMGQKDDF-SAGHVGGPFSCTEICLKDVPEMGYRHTDTWHGGDPRDAEGGGIPCDGRGEVCFRGGNIFVGYYKKEDKTREAFDEDGWLLSGDIGLWTPEGTLKIIDRKKNIFKLSQVQSVIDHE*KEMR*ASKPCACTYVLGLLR*RCDMGV 483
            YGQTE  A  T+   DDF S GHVGGP   TE+ L DVPEMGY HTDT H G P         C GRGE+  RG N+F GYYK E KT+E  DEDGWL SGDIGLWT  G L+IIDRKKNIFKLSQ + V   + + +   S      +V G     C + V
Sbjct:  301 YGQTEGCAAGTISHPDDFASVGHVGGPTGATEVMLVDVPEMGYLHTDTDHRGQP---------CQGRGEIWIRGPNVFKGYYKDEVKTKETLDEDGWLKSGDIGLWTMSGCLQIIDRKKNIFKLSQGEYVAPEKIENILIGSPLIGQAFVYGDSFQHCLVAV 453
[Close]
BLAST of mRNA_H-elongata_contig133242.2362.1 vs. uniprot
Match: A0A7S3Y2U0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2U0_HETAK)

HSP 1 Score: 155 bits (392), Expect = 4.160e-42
Identity = 75/151 (49.67%), Postives = 95/151 (62.91%), Query Frame = 1 
Query:    1 YGQTETAAGATMGQKDDFSAGHVGGPFSCTEICLKDVPEMGYRHTDTWHGGDPRDAEGGGIPCDGRGEVCFRGGNIFVGYYKKEDKTREAFDEDGWLLSGDIGLWTPEGTLKIIDRKKNIFKLSQVQSVIDHE*KEMR*ASKPCACTYVLG 453
            YGQTE+   AT+       AG+VGGP    EI L+ VP+MGY HTD  HG D       G PC+GRGE+C RG N+F+GYYK E KT+E  D DGWL +GDIG+W P G LKI+DRKKN+FKL+Q + V   + + +   S      +V G
Sbjct:  137 YGQTESTGAATLQAMYTTDAGNVGGPIVSCEIALQSVPDMGYLHTDAAHGEDR------GTPCEGRGEICLRGHNVFMGYYKDEKKTKETIDADGWLHTGDIGIWLPNGALKIVDRKKNLFKLAQGEYVAPEKLENIYGKSSLVGQVFVYG 281
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133242.2362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCY7_ECTSI7.830e-7071.52Long-chain-fatty-acid--CoA ligase n=1 Tax=Ectocarp... [more]
A0A835ZFW5_9STRA3.520e-6265.56Long chain acyl-CoA synthetase n=1 Tax=Tribonema m... [more]
A0A7S2SDD9_9STRA9.520e-4663.57Long-chain-fatty-acid--CoA ligase n=1 Tax=Rhizochr... [more]
B8CBL9_THAPS6.650e-4562.31Long-chain-fatty-acid--CoA ligase n=2 Tax=Thalassi... [more]
A0A7S1VYZ7_9STRA2.550e-4463.08Long-chain-fatty-acid--CoA ligase (Fragment) n=1 T... [more]
A0A7S2L9H9_9STRA6.750e-4455.26Long-chain-fatty-acid--CoA ligase n=1 Tax=Leptocyl... [more]
A0A7S1ZHK7_TRICV7.100e-4462.31Long-chain-fatty-acid--CoA ligase n=1 Tax=Trieres ... [more]
A0A7S2MGH8_9STRA3.380e-4361.54Long-chain-fatty-acid--CoA ligase n=1 Tax=Helicoth... [more]
A0A7S1V9E3_9STRA6.620e-4353.09Long-chain-fatty-acid--CoA ligase n=1 Tax=Grammato... [more]
A0A7S3Y2U0_HETAK4.160e-4249.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133242contigH-elongata_contig133242:22..1443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.9
Seed ortholog evalue9.6e-35
Seed eggNOG ortholog35128.Thaps29867
Preferred nameACSL6
KEGG rclassRC00004,RC00014
KEGG koko:K01897
KEGG TC4.C.1.1
KEGG ReactionR01280
KEGG Pathwayko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG ModuleM00086
GOsGO:0000302,GO:0001101,GO:0001666,GO:0001676,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0003987,GO:0004467,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0005886,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006638,GO:0006639,GO:0006641,GO:0006644,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006805,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007399,GO:0007405,GO:0007584,GO:0008150,GO:0008152,GO:0008283,GO:0008610,GO:0008654,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009410,GO:0009605,GO:0009628,GO:0009629,GO:0009651,GO:0009719,GO:0009725,GO:0009743,GO:0009744,GO:0009746,GO:0009749,GO:0009755,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010193,GO:0010243,GO:0010562,GO:0010565,GO:0010604,GO:0010646,GO:0010720,GO:0010746,GO:0010747,GO:0010866,GO:0010867,GO:0010876,GO:0010941,GO:0010975,GO:0010976,GO:0012505,GO:0014070,GO:0015645,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016053,GO:0016405,GO:0016874,GO:0016877,GO:0016878,GO:0017144,GO:0018130,GO:0019216,GO:0019217,GO:0019220,GO:0019221,GO:0019222,GO:0019432,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019867,GO:0019899,GO:0022008,GO:0023051,GO:0023052,GO:0030154,GO:0030182,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031344,GO:0031346,GO:0031399,GO:0031401,GO:0031667,GO:0031903,GO:0031956,GO:0031957,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0031998,GO:0032000,GO:0032268,GO:0032270,GO:0032368,GO:0032370,GO:0032501,GO:0032502,GO:0032787,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032890,GO:0032892,GO:0033036,GO:0033211,GO:0033559,GO:0033674,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034097,GO:0034201,GO:0034284,GO:0034285,GO:0034641,GO:0034654,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035336,GO:0035337,GO:0035338,GO:0035383,GO:0035384,GO:0036109,GO:0036293,GO:0036314,GO:0042175,GO:0042178,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042579,GO:0042802,GO:0042803,GO:0042981,GO:0043067,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043269,GO:0043270,GO:0043434,GO:0043436,GO:0043549,GO:0043603,GO:0043604,GO:0043651,GO:0044070,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044539,GO:0045017,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045834,GO:0045859,GO:0045860,GO:0045923,GO:0045937,GO:0046320,GO:0046321,GO:0046390,GO:0046394,GO:0046460,GO:0046463,GO:0046483,GO:0046486,GO:0046677,GO:0046889,GO:0046890,GO:0046942,GO:0046949,GO:0046983,GO:0048468,GO:0048518,GO:0048522,GO:0048545,GO:0048583,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051716,GO:0051960,GO:0051962,GO:0055086,GO:0060255,GO:0060284,GO:0061351,GO:0062012,GO:0062013,GO:0065007,GO:0065009,GO:0070013,GO:0070482,GO:0070542,GO:0070723,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071466,GO:0071495,GO:0071616,GO:0071702,GO:0071704,GO:0071900,GO:0071902,GO:0071944,GO:0072089,GO:0072330,GO:0072521,GO:0072522,GO:0080090,GO:0090207,GO:0090208,GO:0090407,GO:0097305,GO:0098588,GO:0098805,GO:0098827,GO:0120035,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903793,GO:1903959,GO:1903961,GO:1905952,GO:1905954,GO:2000026,GO:2000191,GO:2000193,GO:2001233,GO:2001236
EggNOG free text desc.AMP-binding enzyme
EggNOG OGs2XERM@2836,COG1022@1,KOG1256@2759
EC6.2.1.3
COG Functional cat.I
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size638
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133242.2362.1prot_H-elongata_contig133242.2362.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133242 258..1410 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929790.1225207-UTR-H-elongata_contig133242:21..2571622929790.1225207-UTR-H-elongata_contig133242:21..257Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133242 22..257 -
1691679158.5169034-UTR-H-elongata_contig133242:21..2571691679158.5169034-UTR-H-elongata_contig133242:21..257Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133242 22..257 -
1622929790.1876633-UTR-H-elongata_contig133242:1410..14431622929790.1876633-UTR-H-elongata_contig133242:1410..1443Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133242 1411..1443 -
1691679158.556394-UTR-H-elongata_contig133242:1410..14431691679158.556394-UTR-H-elongata_contig133242:1410..1443Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133242 1411..1443 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929790.1368582-CDS-H-elongata_contig133242:257..3161622929790.1368582-CDS-H-elongata_contig133242:257..316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133242 258..316 -
1691679158.530078-CDS-H-elongata_contig133242:257..3161691679158.530078-CDS-H-elongata_contig133242:257..316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133242 258..316 -
1622929790.1510406-CDS-H-elongata_contig133242:867..10061622929790.1510406-CDS-H-elongata_contig133242:867..1006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133242 868..1006 -
1691679158.5388682-CDS-H-elongata_contig133242:867..10061691679158.5388682-CDS-H-elongata_contig133242:867..1006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133242 868..1006 -
1622929790.1649644-CDS-H-elongata_contig133242:1239..14101622929790.1649644-CDS-H-elongata_contig133242:1239..1410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133242 1240..1410 -
1691679158.5478194-CDS-H-elongata_contig133242:1239..14101691679158.5478194-CDS-H-elongata_contig133242:1239..1410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133242 1240..1410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133242.2362.1

>prot_H-elongata_contig133242.2362.1 ID=prot_H-elongata_contig133242.2362.1|Name=mRNA_H-elongata_contig133242.2362.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
MGQKDDFSAGHVGGPFSCTEICLKDVPEMGYRHTDTWHGGDPRDAEGGGI
PCDGRGEVCFRGGNIFVGYYKKEDKTREAFDEDGWLLSGDIGLWTPEGTL
KIIDRKKNIFKLSQVQSVIDHE*
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mRNA from alignment at H-elongata_contig133242:22..1443-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133242.2362.1 ID=mRNA_H-elongata_contig133242.2362.1|Name=mRNA_H-elongata_contig133242.2362.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1422bp|location=Sequence derived from alignment at H-elongata_contig133242:22..1443- (Himanthalia elongata Himel1 dioecious)
TACGGGCAGACGGAGACGGCGGCTGGGGCCACCATGGGCCAAAAAGATGA
CTTCTCCGCGGGCCACGTGGGGGGACCGTTCAGCTGCACGGAGATCTGCC
TCAAAGACGTGCCCGAGATGGGGTACAGGCACACTGACACGTGGCACGGC
GGCGACCCCAGGGACGCAGAGGGTGGGGGCATTCCTTGCGACGGCAGAGG
AGAGGTAAAAGAGGCAAACGTATAGCGTAGGTATTGGTTAAGGGGAGGTT
TCGTTGACCTCGAGGCAGGTAGGCGTTGTGGGTTCAGCCCTGCTTTATTG
AGGAGGCACACGTTGAGCAGGTCTCTCGTCCGAGGAGGGGGGGTGGGGGG
GGAGGCTAAACCTCTCCCCTGTCTCCTTCTCACAGTGGTGCGTTTTTTAA
ACGAACTCCCGCGTGCTGCCATTGCCGGGAAATTAAGGTGTGCTTCCGCG
GGGGTAACATCTTCGTGGGGTACTACAAGAAAGAAGACAAGACTCGTGAA
GCGTTCGACGAAGATGGATGGCTGCTGTCGGGCGACATCGGCCTCTGGAC
CCCCGAGGGAACATTGAAGATCATCGGTGCGTGCATGCGCGCTTTGATTT
TCGTCTCCTCCCCCGCCCCAGCAAACACACACAGTTTTTTTTTTAAGGCG
CTGAAGTATCCACGCCGATTGTGTGCGCCTTCTCTCAAGGAAAACACATA
AATTATTTTTTAAAACCTGAGATAACGGGGAAAATCCAGAATATCCCCCG
TTAAATTGCTCCATTTGATTCGTCGGAAGAACTCAAACTGGGCGACAAAC
TATTTTCCGGATGTTGGAGTAAAACATATGCCTAGCTGTCCCCCCCCTTC
TATATGCCGTCTCAACCGGTTGGTGTGTCCTGTGGTCTAAGGGCGCGCAT
CACCGTTCCAGCCGGATCTTTCCTTACCCAATATAAAAAGCGCCTGCCTT
GAACACCGTCAAAATCAACGTCACGATTCCTCACTTTATCATGTCCGCCT
GATGTCCGCGCTTCATGTGTCTCACATATTTTTGAATCGGCGTCACTTCC
CGTTCGAAAAACGCCTGTTGGGGCCGTACGACTTGGAACTCCCCTACCGT
GACTCATATGGCTCGGCGAGCAATCAGACCGCAAGAAAAACATCTTCAAA
CTATCCCAGGTGCAGTCAGTCATCGATCATGAATGAAAAGAAATGAGATG
AGCGTCGAAACCGTGTGCGTGTACATATGTCTTGGGCCTTTTGAGATAGA
GGTGTGATATGGGGGTGGGGGAAAGCTCCTTTGGGGTCGGCCACACGATG
CGACGCCACCCGGGTCGTTCGAACACCTTGGGAAAGCCGTGGTGAATCTT
GCTTGCCCCGAGGTATGGGTCACAAGAAAAGAACCAAAACCAATTGGAGG
CCAGAAAGGGGAGGGAACAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig133242:22..1443-

>mRNA_H-elongata_contig133242.2362.1 ID=mRNA_H-elongata_contig133242.2362.1|Name=mRNA_H-elongata_contig133242.2362.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig133242:22..1443- (Himanthalia elongata Himel1 dioecious)
ATGGGCCAAAAAGATGACTTCTCCGCGGGCCACGTGGGGGGACCGTTCAG
CTGCACGGAGATCTGCCTCAAAGACGTGCCCGAGATGGGGTACAGGCACA
CTGACACGTGGCACGGCGGCGACCCCAGGGACGCAGAGGGTGGGGGCATT
CCTTGCGACGGCAGAGGAGAGATGGGCCAAAAAGATGACTTCTCCGCGGG
CCACGTGGGGGGACCGTTCAGCTGCACGGAGATCTGCCTCAAAGACGTGC
CCGAGATGGGGTACAGGCACACTGACACGTGGCACGGCGGCGACCCCAGG
GACGCAGAGGGTGGGGGCATTCCTTGCGACGGCAGAGGAGAGGTGTGCTT
CCGCGGGGGTAACATCTTCGTGGGGTACTACAAGAAAGAAGACAAGACTC
GTGAAGCGTTCGACGAAGATGGATGGCTGCTGTCGGGCGACATCGGCCTC
TGGACCCCCGAGGGAACATTGAAGATCATCGGTGTGCTTCCGCGGGGGTA
ACATCTTCGTGGGGTACTACAAGAAAGAAGACAAGACTCGTGAAGCGTTC
GACGAAGATGGATGGCTGCTGTCGGGCGACATCGGCCTCTGGACCCCCGA
GGGAACATTGAAGATCATCGACCGCAAGAAAAACATCTTCAAACTATCCC
AGGTGCAGTCAGTCATCGATCATGAATGAACCGCAAGAAAAACATCTTCA
AACTATCCCAGGTGCAGTCAGTCATCGATCATGAATGA
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