mRNA_H-elongata_contig133031.2353.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133031.2353.1
Unique NamemRNA_H-elongata_contig133031.2353.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig133031.2353.1 vs. uniprot
Match: A0A1Q9BX80_SYMMI (Fructose-bisphosphatase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9BX80_SYMMI)

HSP 1 Score: 86.3 bits (212), Expect = 2.150e-20
Identity = 40/58 (68.97%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    7 WTPVRTPGRFCVAFDPLDGSSNIDCNVSTGTIFSVYRKKSAVGGNIDDILRAGVDIKV 180
            W P+   GRF VAFDPLDGSSNIDCNVSTGTIF+VY K S     +DDILR G DI V
Sbjct:    2 WVPLDKAGRFVVAFDPLDGSSNIDCNVSTGTIFAVYEKTSDKPATVDDILRTGNDIMV 59
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BLAST of mRNA_H-elongata_contig133031.2353.1 vs. uniprot
Match: A0A836CP10_9STRA (Fructose-bisphosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP10_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 5.370e-20
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:   28 GRFCVAFDPLDGSSNIDCNVSTGTIFSVYRKKSAVGGNIDDILRAGVDIKV 180
            G++CVAFDPLDGSSNIDCNVSTGTIF+VY KK    GNI+D++RAG+D+KV
Sbjct:  115 GKYCVAFDPLDGSSNIDCNVSTGTIFAVYEKKEGSVGNIEDVMRAGIDLKV 165
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BLAST of mRNA_H-elongata_contig133031.2353.1 vs. uniprot
Match: A0A1E7F570_9STRA (Fructose-bisphosphatase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F570_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.800e-17
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   13 PVRTPGRFCVAFDPLDGSSNIDCNVSTGTIFSVYRKKSAVGGNIDDILRAG 165
            P    G+FCVAFDPLDGSSNIDCNVS GTIFSVY +    GG +DD+LR+G
Sbjct:  101 PAGKSGKFCVAFDPLDGSSNIDCNVSVGTIFSVYERSPGSGGTVDDLLRSG 151
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BLAST of mRNA_H-elongata_contig133031.2353.1 vs. uniprot
Match: A0A7R9WVU4_9STRA (Fructose-bisphosphatase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WVU4_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.800e-17
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:   13 PVRTPGRFCVAFDPLDGSSNIDCNVSTGTIFSVYRKKSAVGGNIDDILRAGVD 171
            P    G+FCVAFDPLDGSSNIDCNVS GTIF VY KK    G +DD+LR+G D
Sbjct:  101 PPGKQGKFCVAFDPLDGSSNIDCNVSVGTIFCVYEKKPGSDGTVDDLLRSGAD 153
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BLAST of mRNA_H-elongata_contig133031.2353.1 vs. uniprot
Match: A0A7S0AIU9_9STRA (Fructose-bisphosphatase n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AIU9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.860e-17
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   13 PVRTPGRFCVAFDPLDGSSNIDCNVSTGTIFSVYRKKSAVGGNIDDILRAGVD 171
            P    G++CVAFDPLDGSSNIDCNVS GTIFSV+ KK    G +DD+LR+G D
Sbjct:   69 PKEKAGKYCVAFDPLDGSSNIDCNVSVGTIFSVFAKKEGSEGTVDDLLRSGAD 121
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BLAST of mRNA_H-elongata_contig133031.2353.1 vs. uniprot
Match: A0A7S4GJ99_9EUGL (Fructose-bisphosphatase n=2 Tax=Eutreptiella TaxID=73024 RepID=A0A7S4GJ99_9EUGL)

HSP 1 Score: 83.2 bits (204), Expect = 2.950e-17
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   28 GRFCVAFDPLDGSSNIDCNVSTGTIFSVYRKKSAVGGNIDDILRAGVDIKV 180
            GRFCVAFDPLDGSSNIDCNVSTGTIF+VY KK A   + +DILR G DI V
Sbjct:  172 GRFCVAFDPLDGSSNIDCNVSTGTIFAVYEKKGAGPASAEDILRTGNDIVV 222
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BLAST of mRNA_H-elongata_contig133031.2353.1 vs. uniprot
Match: F0Y4K5_AURAN (Fructose-bisphosphatase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4K5_AURAN)

HSP 1 Score: 82.0 bits (201), Expect = 3.730e-17
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   13 PVRTPGRFCVAFDPLDGSSNIDCNVSTGTIFSVYRKKS-AVGGNIDDILRAGVDI 174
            P    GRFCVAFDPLDGSSNIDCNVSTGTIF+VY KK+    G+++D+LR G DI
Sbjct:   73 PEAQAGRFCVAFDPLDGSSNIDCNVSTGTIFAVYEKKTPGKVGSVEDVLRVGSDI 127
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BLAST of mRNA_H-elongata_contig133031.2353.1 vs. uniprot
Match: A0A7S1D3Q2_CYCTE (Fructose-bisphosphatase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D3Q2_CYCTE)

HSP 1 Score: 82.4 bits (202), Expect = 3.790e-17
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   13 PVRTPGRFCVAFDPLDGSSNIDCNVSTGTIFSVYRKKSAVGGNIDDILRAGVD 171
            P    G+FCVAFDPLDGSSNIDCNVS GTIFSVY KK    G ++D+LR+G D
Sbjct:   98 PEAKRGKFCVAFDPLDGSSNIDCNVSVGTIFSVYEKKPDSDGTVEDLLRSGAD 150
[Close]
BLAST of mRNA_H-elongata_contig133031.2353.1 vs. uniprot
Match: A0A7S3L5B4_9STRA (Fructose-bisphosphatase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L5B4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.890e-17
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   13 PVRTPGRFCVAFDPLDGSSNIDCNVSTGTIFSVYRKKSAVGGNIDDILRAGVD 171
            P    G+FCVAFDPLDGSSNIDCNVS GTIFSVY+ K    G +DD+LR+G D
Sbjct:  101 PPGKRGKFCVAFDPLDGSSNIDCNVSVGTIFSVYQTKPGSDGTVDDLLRSGAD 153
[Close]
BLAST of mRNA_H-elongata_contig133031.2353.1 vs. uniprot
Match: A0A7S2EY14_TRICV (Fructose-bisphosphatase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EY14_TRICV)

HSP 1 Score: 81.3 bits (199), Expect = 4.500e-17
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   13 PVRTPGRFCVAFDPLDGSSNIDCNVSTGTIFSVYRKKSAVGGNIDDILRAGVD 171
            P    G+FCVAFDPLDGSSNIDCNVS GTIFSVY KK+   G  +D+LR+G D
Sbjct:  134 PKEKAGKFCVAFDPLDGSSNIDCNVSVGTIFSVYEKKADSEGTEEDLLRSGAD 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133031.2353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q9BX80_SYMMI2.150e-2068.97Fructose-bisphosphatase n=1 Tax=Symbiodinium micro... [more]
A0A836CP10_9STRA5.370e-2074.51Fructose-bisphosphatase n=1 Tax=Tribonema minus Ta... [more]
A0A1E7F570_9STRA2.800e-1768.63Fructose-bisphosphatase n=1 Tax=Fragilariopsis cyl... [more]
A0A7R9WVU4_9STRA2.800e-1767.92Fructose-bisphosphatase n=1 Tax=Craspedostauros au... [more]
A0A7S0AIU9_9STRA2.860e-1766.04Fructose-bisphosphatase n=1 Tax=Minutocellus polym... [more]
A0A7S4GJ99_9EUGL2.950e-1776.47Fructose-bisphosphatase n=2 Tax=Eutreptiella TaxID... [more]
F0Y4K5_AURAN3.730e-1769.09Fructose-bisphosphatase n=1 Tax=Aureococcus anopha... [more]
A0A7S1D3Q2_CYCTE3.790e-1767.92Fructose-bisphosphatase n=1 Tax=Cyclophora tenuis ... [more]
A0A7S3L5B4_9STRA3.890e-1767.92Fructose-bisphosphatase n=1 Tax=Amphora coffeiform... [more]
A0A7S2EY14_TRICV4.500e-1767.92Fructose-bisphosphatase (Fragment) n=1 Tax=Trieres... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133031contigH-elongata_contig133031:112..303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue3.2e-13
Seed eggNOG ortholog35128.Thaps33021
KEGG rclassRC00017
KEGG koko:K03841
KEGG ReactionR00762,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG ModuleM00003,M00165,M00167,M00344
EggNOG free text desc.Belongs to the FBPase class 1 family
EggNOG OGs2XAG4@2836,COG0158@1,KOG1458@2759
EC3.1.3.11
COG Functional cat.G
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.4262037-CDS-H-elongata_contig133031:111..3031622929789.4262037-CDS-H-elongata_contig133031:111..303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133031 112..303 -
1691679158.254404-CDS-H-elongata_contig133031:111..3031691679158.254404-CDS-H-elongata_contig133031:111..303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133031 112..303 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133031.2353.1prot_H-elongata_contig133031.2353.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133031 112..303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133031.2353.1

>prot_H-elongata_contig133031.2353.1 ID=prot_H-elongata_contig133031.2353.1|Name=mRNA_H-elongata_contig133031.2353.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MGWTPVRTPGRFCVAFDPLDGSSNIDCNVSTGTIFSVYRKKSAVGGNIDD
ILRAGVDIKVREK*
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mRNA from alignment at H-elongata_contig133031:112..303-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133031.2353.1 ID=mRNA_H-elongata_contig133031.2353.1|Name=mRNA_H-elongata_contig133031.2353.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig133031:112..303- (Himanthalia elongata Himel1 dioecious)
ATGGGCTGGACTCCTGTCCGCACTCCAGGTCGGTTCTGTGTTGCGTTCGA
CCCCCTCGACGGATCCTCCAACATCGACTGCAACGTATCCACCGGGACCA
TTTTCTCCGTCTACCGGAAAAAGTCGGCCGTGGGAGGAAACATCGACGAC
ATCCTGCGCGCAGGCGTCGACATCAAGGTTAGAGAGAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig133031:112..303-

>mRNA_H-elongata_contig133031.2353.1 ID=mRNA_H-elongata_contig133031.2353.1|Name=mRNA_H-elongata_contig133031.2353.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig133031:112..303- (Himanthalia elongata Himel1 dioecious)
ATGGGCTGGACTCCTGTCCGCACTCCAGGTCGGTTCTGTGTTGCGTTCGA
CCCCCTCGACGGATCCTCCAACATCGACTGCAACGTATCCACCGGGACCA
TTTTCTCCGTCTACCGGAAAAAGTCGGCCGTGGGAGGAAACATCGACGAC
ATCCTGCGCGCAGGCGTCGACATCAAGGTTAGAGAGAAATAAATGGGCTG
GACTCCTGTCCGCACTCCAGGTCGGTTCTGTGTTGCGTTCGACCCCCTCG
ACGGATCCTCCAACATCGACTGCAACGTATCCACCGGGACCATTTTCTCC
GTCTACCGGAAAAAGTCGGCCGTGGGAGGAAACATCGACGACATCCTGCG
CGCAGGCGTCGACATCAAGGTTAGAGAGAAATAA
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