mRNA_H-elongata_contig13301.2350.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13301.2350.1
Unique NamemRNA_H-elongata_contig13301.2350.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13301.2350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13301contigH-elongata_contig13301:6781..8120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size384
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13301.2350.1prot_H-elongata_contig13301.2350.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13301 6781..8120 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.1120808-CDS-H-elongata_contig13301:6780..68761622929789.1120808-CDS-H-elongata_contig13301:6780..6876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13301 6781..6876 -
1691679158.1077394-CDS-H-elongata_contig13301:6780..68761691679158.1077394-CDS-H-elongata_contig13301:6780..6876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13301 6781..6876 -
1622929789.128523-CDS-H-elongata_contig13301:7166..73041622929789.128523-CDS-H-elongata_contig13301:7166..7304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13301 7167..7304 -
1691679158.1208224-CDS-H-elongata_contig13301:7166..73041691679158.1208224-CDS-H-elongata_contig13301:7166..7304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13301 7167..7304 -
1622929789.169375-CDS-H-elongata_contig13301:7652..77211622929789.169375-CDS-H-elongata_contig13301:7652..7721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13301 7653..7721 -
1691679158.1359017-CDS-H-elongata_contig13301:7652..77211691679158.1359017-CDS-H-elongata_contig13301:7652..7721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13301 7653..7721 -
1622929789.1906285-CDS-H-elongata_contig13301:8039..81201622929789.1906285-CDS-H-elongata_contig13301:8039..8120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13301 8040..8120 -
1691679158.1443188-CDS-H-elongata_contig13301:8039..81201691679158.1443188-CDS-H-elongata_contig13301:8039..8120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13301 8040..8120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13301.2350.1

>prot_H-elongata_contig13301.2350.1 ID=prot_H-elongata_contig13301.2350.1|Name=mRNA_H-elongata_contig13301.2350.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
MCCKGWHMWTDGRTFEGEWNDGKPHGMGKWTSPRGEAYDGELVRGKKSGK
GTFTYADGRKYIGEWLDGMRDGKGTRHYPDGSLYTGCWAKDKRHGWGEYT
WRDGRVWVGEWREGNPVKVTHDYYIIV*
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mRNA from alignment at H-elongata_contig13301:6781..8120-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13301.2350.1 ID=mRNA_H-elongata_contig13301.2350.1|Name=mRNA_H-elongata_contig13301.2350.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1340bp|location=Sequence derived from alignment at H-elongata_contig13301:6781..8120- (Himanthalia elongata Himel1 dioecious)
ATGTGTTGTAAGGGCTGGCACATGTGGACAGACGGGCGCACTTTCGAGGG
CGAATGGAATGACGGCAAGCCACATGGAATGGTGAGCTACCGTAGTTCCA
CCTTGTGTATTTAGCATTGCTTCGAGACTGTCAAGTACGGATATGCATTA
GAAAGGATCACACTTTTGAAATGAATATAGTATATTAATATGATAGTAGT
ATTATATTAAGCAAGACAAAGAGTAGAGAATATTTAGTCTCACAACTAGA
GTATAATATGACTCTTCACTCTTCTGCAATTGTTTTATCTGTTGCAGTTC
ATGTAAGTACAGTATAGAAGTCTTCCGTAATGGTTGTGGCTGAAAGCAGT
TGAAGAGGTAATTTCACTGTTAGAATGATATGCGACGAATCACTCTCAGG
GAAAGTGGACCTCTCCACGCGGGGAGGCATACGACGGAGAGCTCGTTCGA
GGGAAAAAGAGTGGAAAGGTATGTTGATCCCGTTTTTCTTGCATCTCCAA
AAGCCTCGGTATCATGGCGTTATGTCGCGTTATGTCACCGCTAAACTTTG
TTGCTGATAACTTAATTGACTTATACAGAAGACCACGATAAACTAGAAAT
TATAGAATATTACAACAGTATACTGCACTGTAGTAACTTCTCTGGAACGC
TAACGAGATATTTAGAGTAAAGTGCAAACGCAAGTGCAAGTGTAAGTTTC
CTTTTTTAAAGTATGATAGTAAGTAAATATTTAGTTGTAAGAGAAGTACG
GCTTTCATCTACAGCTTTGTAATGTAGAGTACTCGTGTTTTTCCATTGGA
ATTGAACGCCACGCAGGGCACTTTCACCTACGCCGACGGGAGGAAGTATA
TTGGCGAGTGGCTTGACGGAATGCGTGACGGGAAAGGAACTCGACATTAC
CCAGATGGCAGCTTGTACACAGGATGTTGGGCGAAGGACAAGCGCCACGG
CTGGGTGAGTGCGGTCCAGGGGGGAAGATTAGGGTTAGGGTTAGTAGTCA
AGTAGTCAAGTACGGTAAATCTCACTAGAGTAGTATTAGTATTAGGGTTA
GTATTAGTAGTCAAGTACGGCAAGAGTTAGGGTTAGGGTTCCCTGCGGCT
CGATTACAAGATATGACGAGGTCGTTTTTAGTTTTTATACCTCTGTATAC
CTCTTTATACCTGTTTGTCATCCTCTTCATGCTCTATGTATCTTTATGTA
TGCGGTAATTAATGCCTTCGGACCTGGACATGGGTTTGGCGCAGGGCGAG
TACACGTGGAGGGATGGCCGTGTCTGGGTTGGGGAATGGAGAGAAGGAAA
CCCCGTCAAGGTGACACACGACTATTATATTATAGTATAG
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Coding sequence (CDS) from alignment at H-elongata_contig13301:6781..8120-

>mRNA_H-elongata_contig13301.2350.1 ID=mRNA_H-elongata_contig13301.2350.1|Name=mRNA_H-elongata_contig13301.2350.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig13301:6781..8120- (Himanthalia elongata Himel1 dioecious)
ATGTGTTGTAAGGGCTGGCACATGTGGACAGACGGGCGCACTTTCGAGGG
CGAATGGAATGACGGCAAGCCACATGGAATGATGTGTTGTAAGGGCTGGC
ACATGTGGACAGACGGGCGCACTTTCGAGGGCGAATGGAATGACGGCAAG
CCACATGGAATGGGAAAGTGGACCTCTCCACGCGGGGAGGCATACGACGG
AGAGCTCGTTCGAGGGAAAAAGAGTGGAAAGGGAAAGTGGACCTCTCCAC
GCGGGGAGGCATACGACGGAGAGCTCGTTCGAGGGAAAAAGAGTGGAAAG
GGCACTTTCACCTACGCCGACGGGAGGAAGTATATTGGCGAGTGGCTTGA
CGGAATGCGTGACGGGAAAGGAACTCGACATTACCCAGATGGCAGCTTGT
ACACAGGATGTTGGGCGAAGGACAAGCGCCACGGCTGGGGCACTTTCACC
TACGCCGACGGGAGGAAGTATATTGGCGAGTGGCTTGACGGAATGCGTGA
CGGGAAAGGAACTCGACATTACCCAGATGGCAGCTTGTACACAGGATGTT
GGGCGAAGGACAAGCGCCACGGCTGGGGCGAGTACACGTGGAGGGATGGC
CGTGTCTGGGTTGGGGAATGGAGAGAAGGAAACCCCGTCAAGGTGACACA
CGACTATTATATTATAGTATAGGGCGAGTACACGTGGAGGGATGGCCGTG
TCTGGGTTGGGGAATGGAGAGAAGGAAACCCCGTCAAGGTGACACACGAC
TATTATATTATAGTATAG
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