mRNA_H-elongata_contig133007.2349.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133007.2349.1
Unique NamemRNA_H-elongata_contig133007.2349.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig133007.2349.1 vs. uniprot
Match: D7FXG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG2_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 3.000e-32
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 1
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAQENLTLLFEKNKQKGFMPPGGADGGK 216
            QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMI+SPFQTA ENLTLLFEKNKQKGF  P   +GGK
Sbjct:  148 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIDSPFQTAHENLTLLFEKNKQKGFGMPA-LEGGK 218          
BLAST of mRNA_H-elongata_contig133007.2349.1 vs. uniprot
Match: A0A6H5L3L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L2_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 5.970e-30
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 1
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAQENLTLLFEKNKQKGFMPPGGADGGK 216
            QALAVLPTSGNPHNQLA+LATYTDAECVSVYRYCRSLMIESPFQTA ENLTLLFEKNK KGF  P   +GGK
Sbjct:  291 QALAVLPTSGNPHNQLALLATYTDAECVSVYRYCRSLMIESPFQTAHENLTLLFEKNK-KGFGMPA-LEGGK 360          
BLAST of mRNA_H-elongata_contig133007.2349.1 vs. uniprot
Match: A0A835Z7T1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T1_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.370e-24
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 1
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAQENLTLLFEKNKQK 180
            +ALA +P  GNPHNQ+AVLATYTDAECV+VYRYCRSL+I  PF TA+ENL LLFEKNKQK
Sbjct:  193 RALAAMPHGGNPHNQMAVLATYTDAECVAVYRYCRSLLIRHPFMTARENLALLFEKNKQK 252          
BLAST of mRNA_H-elongata_contig133007.2349.1 vs. uniprot
Match: A0A6A4Z8E5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z8E5_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.840e-23
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAQENLTLLFEKNKQKGFMPPGGADGGK 216
            +ALA+LP +GNPHNQLAVLATY +AE ++VYRYCRSL++ +PF TA+ENL LLFE+N+ +   P   ADGGK
Sbjct:  171 RALAILPDNGNPHNQLAVLATYVEAEAIAVYRYCRSLLLPTPFATAEENLVLLFERNRHRALPPA--ADGGK 240          
BLAST of mRNA_H-elongata_contig133007.2349.1 vs. uniprot
Match: A0A3R7BM42_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BM42_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.030e-22
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAQENLTLLFEKNKQKGFMPPGGADGGK 216
            +ALA+LP +GNPHNQLAVLATY +AE ++VYRYCRSL++ +PF TA+ENL LLFE+N+ +   P   ADGGK
Sbjct:  174 RALAILPDNGNPHNQLAVLATYVEAEAIAVYRYCRSLLLPTPFATAEENLVLLFERNRHRALPPA--ADGGK 243          
BLAST of mRNA_H-elongata_contig133007.2349.1 vs. uniprot
Match: W4FHK0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FHK0_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.580e-22
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAQENLTLLFEKNKQKGFMPPGGADGGK 216
            +ALA+LP +GNPHNQLAVLATY +AE ++VYRYCRSL++ +PF TA+ENL LLFE+N+ +   P   ADGGK
Sbjct:  171 RALAILPDNGNPHNQLAVLATYVEAEAIAVYRYCRSLLLPTPFATAEENLVLLFERNRHRALPPV--ADGGK 240          
BLAST of mRNA_H-elongata_contig133007.2349.1 vs. uniprot
Match: W7U237_9STRA (Telomerase activating protein est1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U237_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.590e-22
Identity = 44/60 (73.33%), Postives = 54/60 (90.00%), Query Frame = 1
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAQENLTLLFEKNKQK 180
            +A+  +PTSGNPHNQLAVLATYT+AECV+VYRYCR+++  SPF TA+ENL LLFEKN+QK
Sbjct:  173 RAIDTMPTSGNPHNQLAVLATYTEAECVAVYRYCRAVLCASPFPTAKENLALLFEKNRQK 232          
BLAST of mRNA_H-elongata_contig133007.2349.1 vs. uniprot
Match: A0A3R7NMQ1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NMQ1_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 6.440e-22
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAQENLTLLFEKNKQKGFMPP 195
            +ALAVLP +GNPHNQLAVLATY +AE V+VYRYCRSL+   PF TA+ENL LLFE+++Q+  +PP
Sbjct:  192 RALAVLPENGNPHNQLAVLATYIEAETVAVYRYCRSLLTAQPFVTAEENLALLFERSRQRPLVPP 256          
BLAST of mRNA_H-elongata_contig133007.2349.1 vs. uniprot
Match: A0A024GJG1_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GJG1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 7.580e-22
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 1
Query:    4 ALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAQENLTLLFEKNKQKGFMPP 195
            AL V+P +GNPHNQLAVLATY DAE V+VYRYCRSL+I +PF TA+ENL LLFE+++Q+   PP
Sbjct:  219 ALRVIPENGNPHNQLAVLATYVDAETVAVYRYCRSLLIANPFSTAEENLVLLFERSRQQPLAPP 282          
BLAST of mRNA_H-elongata_contig133007.2349.1 vs. uniprot
Match: A0A2D4C910_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C910_PYTIN)

HSP 1 Score: 97.1 bits (240), Expect = 7.580e-22
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAQENLTLLFEKNKQKGFMPP 195
            +AL+VLP +GNPHNQLAVLATY +AE V+VYRYCRSL+I  PF TA+ENL LLFE+++Q+   PP
Sbjct:  193 RALSVLPENGNPHNQLAVLATYVEAETVAVYRYCRSLLIAQPFATAEENLALLFERSRQRPLAPP 257          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133007.2349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXG2_ECTSI3.000e-3288.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3L2_9PHAE5.970e-3087.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z7T1_9STRA1.370e-2478.33Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6A4Z8E5_9STRA4.840e-2363.89Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3R7BM42_9STRA1.030e-2263.89Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
W4FHK0_9STRA1.580e-2263.89Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W7U237_9STRA1.590e-2273.33Telomerase activating protein est1 n=2 Tax=Monodop... [more]
A0A3R7NMQ1_9STRA6.440e-2267.69Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A024GJG1_9STRA7.580e-2268.75Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
A0A2D4C910_PYTIN7.580e-2267.69Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133007contigH-elongata_contig133007:670..885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue2.5e-27
Seed eggNOG ortholog2880.D7FXG2
EggNOG free text desc.telomerase RNA binding
EggNOG OGsKOG2162@1,KOG2162@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.0578918-CDS-H-elongata_contig133007:669..8851622929789.0578918-CDS-H-elongata_contig133007:669..885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133007 670..885 -
1691679158.0961735-CDS-H-elongata_contig133007:669..8851691679158.0961735-CDS-H-elongata_contig133007:669..885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133007 670..885 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133007.2349.1prot_H-elongata_contig133007.2349.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133007 670..885 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133007.2349.1

>prot_H-elongata_contig133007.2349.1 ID=prot_H-elongata_contig133007.2349.1|Name=mRNA_H-elongata_contig133007.2349.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAQENL
TLLFEKNKQKGFMPPGGADGGK
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mRNA from alignment at H-elongata_contig133007:670..885-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133007.2349.1 ID=mRNA_H-elongata_contig133007.2349.1|Name=mRNA_H-elongata_contig133007.2349.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig133007:670..885- (Himanthalia elongata Himel1 dioecious)
CAGGCGCTGGCAGTTCTTCCGACCAGTGGAAACCCACACAATCAACTGGC CGTGCTTGCCACCTACACTGACGCCGAGTGCGTCTCCGTCTACCGTTACT GCCGCAGCCTCATGATCGAAAGCCCCTTCCAGACGGCGCAGGAAAACCTG ACCCTGCTATTCGAGAAGAACAAGCAAAAGGGCTTCATGCCGCCGGGGGG TGCAGACGGGGGCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig133007:670..885-

>mRNA_H-elongata_contig133007.2349.1 ID=mRNA_H-elongata_contig133007.2349.1|Name=mRNA_H-elongata_contig133007.2349.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig133007:670..885- (Himanthalia elongata Himel1 dioecious)
CAGGCGCTGGCAGTTCTTCCGACCAGTGGAAACCCACACAATCAACTGGC
CGTGCTTGCCACCTACACTGACGCCGAGTGCGTCTCCGTCTACCGTTACT
GCCGCAGCCTCATGATCGAAAGCCCCTTCCAGACGGCGCAGGAAAACCTG
ACCCTGCTATTCGAGAAGAACAAGCAAAAGGGCTTCATGCCGCCGGGGGG
TGCAGACGGGGGCAAGCAGGCGCTGGCAGTTCTTCCGACCAGTGGAAACC
CACACAATCAACTGGCCGTGCTTGCCACCTACACTGACGCCGAGTGCGTC
TCCGTCTACCGTTACTGCCGCAGCCTCATGATCGAAAGCCCCTTCCAGAC
GGCGCAGGAAAACCTGACCCTGCTATTCGAGAAGAACAAGCAAAAGGGCT
TCATGCCGCCGGGGGGTGCAGACGGGGGCAAG
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