mRNA_H-elongata_contig132317.2319.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig132317.2319.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE) HSP 1 Score: 105 bits (263), Expect = 6.780e-24 Identity = 56/126 (44.44%), Postives = 80/126 (63.49%), Query Frame = 1
Query: 1 ELTFGTFNIRIVAVNGVNGIGH-IDSLLRPCASRGCDVTGLQETKWDGNSEITASGYRVYFSGDCTGVKGKKGQHGVGLAIKEETVNNVGKNDIAIECISARLLKARISIKYNF-LTFVVAYDPTE 372
+L+FGTF++R + +G N IGH + +++ ++ GCDV GLQET+ +G I GY + +SG G K K+G+ GVG+AIKE VG+ +ECIS RL+K R+ I +TFVV Y PTE
Sbjct: 154 DLSFGTFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 279
BLAST of mRNA_H-elongata_contig132317.2319.1 vs. uniprot
Match: A0A6H5KSV0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV0_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 2.030e-19 Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 1
Query: 73 SLLRPCASRGCDVTGLQETKWDGNSEITASGYRVYFSGDCTGVKGKKGQHGVGLAIKEETVNNVGKNDIAIECISARLLKARISIKYNF-LTFVVAYDPTE 372
++++ C++ GCDVTGLQET+ +G I GY + +SG G K K+G HGVG+AIKE +VG+ +ECIS RL+K R+ I +TFV+ Y PTE
Sbjct: 2 TVMQICSATGCDVTGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVMGYAPTE 102
BLAST of mRNA_H-elongata_contig132317.2319.1 vs. uniprot
Match: A0A6H5JR34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR34_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 8.160e-18 Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 1
Query: 1 ELTFGTFNIRIVAVNGVNGIGH-IDSLLRPCASRGCDVTGLQETKWDGNSEITASGYRVYFSGDCTGVKGKKGQHGVGLAIKEETVNNVGK 270
+L+FGTFN+R +A NG N IGH + ++++ C++ CDV GLQET+ +G I GY + +SG G K K+G HGVG+AIKE +VG+
Sbjct: 58 DLSFGTFNVRTLAYNGRNPIGHNVMTVMQICSATDCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGE 148
BLAST of mRNA_H-elongata_contig132317.2319.1 vs. uniprot
Match: A0A6H5JUT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT2_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 4.120e-17 Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 1
Query: 91 ASRGCDVTGLQETKWDGNSEITASGYRVYFSGDCTGVKGKKGQHGVGLAIKEETVNNVGKNDIAIECISARLLKARISIKYNF-LTFVVAYDPTE 372
++ GCDV LQET+ +G I GY + +SG G K K+G HGVG+AIKE +VG+ +ECIS RL+KAR+ I +TFVV Y PTE
Sbjct: 8 SATGCDVIELQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKARLQIGRTCRVTFVVGYAPTE 102
BLAST of mRNA_H-elongata_contig132317.2319.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 4.020e-13 Identity = 49/132 (37.12%), Postives = 69/132 (52.27%), Query Frame = 1
Query: 4 LTFGTFNIRIVAVNGVNGIGHIDSLLRPCASRGCDVTGLQETKWDGNSEITASGYRVYFSGDCTGVKGKKGQHGVGLAIKEETVNNVGKNDIAIECISARLLKARISIKYN--FLTFVVAYDPTEEATEGEK 393
L T+N+R +AV GVNG G S+L A + V G+QET+ G +E A+G+RV+ G TG G HGVG+A+KE + E I RL+ R+ + + + FV A PTE +T K
Sbjct: 58 LRVATWNVRTLAVIGVNGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFCCGTETG-----GVHGVGIAVKESLCKT---STFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSK 181
BLAST of mRNA_H-elongata_contig132317.2319.1 vs. uniprot
Match: A0A2P8XIN1_BLAGE (Craniofacial development protein 2 n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8XIN1_BLAGE) HSP 1 Score: 58.2 bits (139), Expect = 5.090e-8 Identity = 38/133 (28.57%), Postives = 62/133 (46.62%), Query Frame = 1
Query: 4 LTFGTFNIRIVAVNGVNGIGHIDSLLRPCASRGCDVTGLQETKWDGNSEITASGYRVYFSGDCTGVKGKKGQHGVGLAIKEETVNNVGKNDIAIECISARLLKARISIKYNFLTFVVAYDPTEEATEGEKAKY 402
+ GT+N++ + G + L + D+ +QET+W I + Y+ G T + GQ G G IK++ V +V IA I+ R+ K RI K+N +T + Y PTEE + K ++
Sbjct: 1 MIIGTWNVKTLLKPG-----KLQELKEQIKNTTIDIVAVQETRWTDVGMIKKKDFTFYYGGPKT----RTGQAGTGFLIKQKMVKHV----IAFNTINERISKLRIRGKFNNITLINVYAPTEECQDNIKDQF 120
BLAST of mRNA_H-elongata_contig132317.2319.1 vs. uniprot
Match: A0A2P8YNN3_BLAGE (Reverse transcriptase domain-containing protein n=2 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8YNN3_BLAGE) HSP 1 Score: 57.0 bits (136), Expect = 8.280e-7 Identity = 38/133 (28.57%), Postives = 59/133 (44.36%), Query Frame = 1
Query: 4 LTFGTFNIRIVAVNGVNGIGHIDSLLRPCASRGCDVTGLQETKWDGNSEITASGYRVYFSGDCTGVKGKKGQHGVGLAIKEETVNNVGKNDIAIECISARLLKARISIKYNFLTFVVAYDPTEEATEGEKAKY 402
+ GT+N++ + G + L DV +QET+W I + Y+ G T + GQ G G I+ + +N V I E + R+ K RI KYN +T + Y PTEE + K ++
Sbjct: 1 MNIGTWNVKTLLKPG-----KLQELKEQLDKTTLDVVAVQETRWSNTEIIKKKDFTFYYGGPKT----RTGQAGTGFFIRTKVMNYV----IGFETYNERISKLRIKGKYNNVTLINVYAPTEEYQDNIKEQF 120
BLAST of mRNA_H-elongata_contig132317.2319.1 vs. uniprot
Match: A0A2P8YU54_BLAGE (Craniofacial development protein 2 (Fragment) n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8YU54_BLAGE) HSP 1 Score: 54.7 bits (130), Expect = 2.080e-6 Identity = 30/99 (30.30%), Postives = 52/99 (52.53%), Query Frame = 1
Query: 106 DVTGLQETKWDGNSEITASGYRVYFSGDCTGVKGKKGQHGVGLAIKEETVNNVGKNDIAIECISARLLKARISIKYNFLTFVVAYDPTEEATEGEKAKY 402
++ +QE +W G I+ Y +++SG+ K K GQ G G + ++ +++ I+ RL K R KYN +T + +Y PTEE + +K K+
Sbjct: 13 EILTIQEIRWSGEGTISKDKYTLFYSGN----KDKAGQAGTGFLVNKKLKDHIS----GFIPINERLCKLRYRGKYNNVTLINSYAPTEEKNDDDKEKF 103
BLAST of mRNA_H-elongata_contig132317.2319.1 vs. uniprot
Match: A0A2P8ZA67_BLAGE (Reverse transcriptase domain-containing protein n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8ZA67_BLAGE) HSP 1 Score: 53.5 bits (127), Expect = 1.340e-5 Identity = 31/92 (33.70%), Postives = 48/92 (52.17%), Query Frame = 1
Query: 106 DVTGLQETKWDGNSEITASGYRVYFSGDCTGVKGKKGQHGVGLAIKEETVNNVGKNDIAIECISARLLKARISIKYNFLTFVVAYDPTEEAT 381
++ LQE +W+G+ I Y +Y+SG K G+ G G +K++ N++ I + RL K RI KYN +T + Y PTE+ T
Sbjct: 22 EIVALQEIRWNGDGIINKKDYTLYYSGPSK----KTGKAGTGFFVKKKIHNSI----IDFVPHNDRLCKLRIQSKYNKITLINTYAPTEDKT 105 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132317.2319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig132317.2319.1 >prot_H-elongata_contig132317.2319.1 ID=prot_H-elongata_contig132317.2319.1|Name=mRNA_H-elongata_contig132317.2319.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp ELTFGTFNIRIVAVNGVNGIGHIDSLLRPCASRGCDVTGLQETKWDGNSEback to top mRNA from alignment at H-elongata_contig132317:96..497+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig132317.2319.1 ID=mRNA_H-elongata_contig132317.2319.1|Name=mRNA_H-elongata_contig132317.2319.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=402bp|location=Sequence derived from alignment at H-elongata_contig132317:96..497+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig132317:96..497+ >mRNA_H-elongata_contig132317.2319.1 ID=mRNA_H-elongata_contig132317.2319.1|Name=mRNA_H-elongata_contig132317.2319.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig132317:96..497+ (Himanthalia elongata Himel1 dioecious)back to top |