mRNA_H-elongata_contig131855.2287.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131855.2287.1
Unique NamemRNA_H-elongata_contig131855.2287.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131855.2287.1 vs. uniprot
Match: A0A6H5JH20_9PHAE (S-methyl-5-thioribose kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH20_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 7.220e-34
Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    1 VVSPQALIHADLHTGSVMAMEGSTQVIDPEFAFYGPMGFDLGAFIGNLLLAYCAVPGNGQGEAYGEWLLGQV 216
            + S +ALIHADLHTGSVMAMEGSTQVIDPEFAFYGPMGFDLGA I NLLLAYCAVPGNGQG  Y EWLL QV
Sbjct:  160 MTSCEALIHADLHTGSVMAMEGSTQVIDPEFAFYGPMGFDLGALIANLLLAYCAVPGNGQGGDYAEWLLEQV 231
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BLAST of mRNA_H-elongata_contig131855.2287.1 vs. uniprot
Match: A0A7S4CZY1_9EUGL (S-methyl-5-thioribose kinase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CZY1_9EUGL)

HSP 1 Score: 98.6 bits (244), Expect = 1.270e-22
Identity = 49/74 (66.22%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:    1 VVSPQALIHADLHTGSVMAME--GSTQVIDPEFAFYGPMGFDLGAFIGNLLLAYCAVPGNGQGEAYGEWLLGQV 216
            V S +ALIHADLHTGS+MA    G+T VIDPEFAFYGPMGFD+GA IGNLLL Y + PG G    Y  WLL Q+
Sbjct:  240 VTSTEALIHADLHTGSIMAKAELGATYVIDPEFAFYGPMGFDIGALIGNLLLCYASGPGRGVDTEYASWLLQQM 313
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BLAST of mRNA_H-elongata_contig131855.2287.1 vs. uniprot
Match: A0A7J8PS49_GOSRA (S-methyl-5-thioribose kinase (Fragment) n=4 Tax=Gossypium TaxID=3633 RepID=A0A7J8PS49_GOSRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.820e-22
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:   13 QALIHADLHTGSVMAMEGSTQVIDPEFAFYGPMGFDLGAFIGNLLLAYCAVPGN-GQG---EAYGEWLL 207
            QALIH DLHTGSVM    STQVIDPEFAFYGPMGFD+GAFIGNL+LA+ A  G+ GQG   ++Y EW+L
Sbjct:   64 QALIHGDLHTGSVMVTPDSTQVIDPEFAFYGPMGFDIGAFIGNLILAFFAQDGHAGQGNDRKSYKEWIL 132
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BLAST of mRNA_H-elongata_contig131855.2287.1 vs. uniprot
Match: C0P420_MAIZE (S-methyl-5-thioribose kinase n=1 Tax=Zea mays TaxID=4577 RepID=C0P420_MAIZE)

HSP 1 Score: 95.5 bits (236), Expect = 2.530e-22
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:   13 QALIHADLHTGSVMAMEGSTQVIDPEFAFYGPMGFDLGAFIGNLLLAYCAVPGNGQG----EAYGEWLL 207
            QALIH DLHTGS+M  EGSTQVIDPEF FYGPMGFD+GAF+GNL+LAY A  G+       +AY +W+L
Sbjct:   81 QALIHGDLHTGSIMVTEGSTQVIDPEFGFYGPMGFDIGAFLGNLILAYYAQNGHADQANDRKAYKKWIL 149
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BLAST of mRNA_H-elongata_contig131855.2287.1 vs. uniprot
Match: A0A803NNN7_CANSA (S-methyl-5-thioribose kinase n=5 Tax=Cannabis sativa TaxID=3483 RepID=A0A803NNN7_CANSA)

HSP 1 Score: 96.3 bits (238), Expect = 7.780e-22
Identity = 48/69 (69.57%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:   13 QALIHADLHTGSVMAMEGSTQVIDPEFAFYGPMGFDLGAFIGNLLLAYCAVPGNGQGEA----YGEWLL 207
            QALIH DLHTGSVM    STQVIDPEFAFYGPMGFD+GAF+GNL+LAY A  G+  GE     Y EW+L
Sbjct:  230 QALIHGDLHTGSVMVTHDSTQVIDPEFAFYGPMGFDIGAFLGNLILAYFAQDGHAVGENDRKNYKEWIL 298
[Close]
BLAST of mRNA_H-elongata_contig131855.2287.1 vs. uniprot
Match: UPI000A2B4F5A (methylthioribose kinase 1-like n=3 Tax=Arachis TaxID=3817 RepID=UPI000A2B4F5A)

HSP 1 Score: 93.2 bits (230), Expect = 8.860e-22
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:   13 QALIHADLHTGSVMAMEGSTQVIDPEFAFYGPMGFDLGAFIGNLLLAYCAVPGNGQG----EAYGEWLL 207
            QALIH DLHTGSVM    STQVIDPEFAFYGPMGFD+GAF+GNL+LAY +  G+       +AY EW+L
Sbjct:   90 QALIHGDLHTGSVMVTRESTQVIDPEFAFYGPMGFDIGAFLGNLILAYFSQDGHADQANDQKAYKEWIL 158
[Close]
BLAST of mRNA_H-elongata_contig131855.2287.1 vs. uniprot
Match: A0A0D6QSW1_ARACU (S-methyl-5-thioribose kinase n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6QSW1_ARACU)

HSP 1 Score: 95.9 bits (237), Expect = 1.110e-21
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:   13 QALIHADLHTGSVMAMEGSTQVIDPEFAFYGPMGFDLGAFIGNLLLAYCAVPGNG----QGEAYGEWLL 207
            QALIH DLHTGS+M    STQVIDPEFAFYGPMGFD+GAFIGNL+LA+ A  G+G    + E Y +W+L
Sbjct:  234 QALIHGDLHTGSIMVTSSSTQVIDPEFAFYGPMGFDIGAFIGNLILAFYAQDGHGKYENEREGYKQWIL 302
[Close]
BLAST of mRNA_H-elongata_contig131855.2287.1 vs. uniprot
Match: A0A1Z8KZ01_9PROT (S-methyl-5-thioribose kinase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1Z8KZ01_9PROT)

HSP 1 Score: 95.5 bits (236), Expect = 1.540e-21
Identity = 41/65 (63.08%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:   13 QALIHADLHTGSVMAMEGSTQVIDPEFAFYGPMGFDLGAFIGNLLLAYCAVPGNGQGEAYGEWLL 207
            Q+LIH DLHTGS+M    +T+VID E+AF+GPMGFD+GA IGNLL+A+CAVPG+G    Y +W+L
Sbjct:  238 QSLIHGDLHTGSIMVTPDATRVIDAEWAFHGPMGFDIGALIGNLLIAFCAVPGHGDNRDYADWIL 302
[Close]
BLAST of mRNA_H-elongata_contig131855.2287.1 vs. uniprot
Match: A0A4S4CX87_CAMSI (S-methyl-5-thioribose kinase n=1 Tax=Camellia sinensis var. sinensis TaxID=542762 RepID=A0A4S4CX87_CAMSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.480e-21
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:   13 QALIHADLHTGSVMAMEGSTQVIDPEFAFYGPMGFDLGAFIGNLLLAYCAVPGNGQGE----AYGEWLL 207
            QALIH DLHTGSVM    STQVIDPEFAFYGPMGFD+GAF+GNL+LA+ A  G+   E    AY +W+L
Sbjct:  174 QALIHGDLHTGSVMVTSNSTQVIDPEFAFYGPMGFDIGAFVGNLILAFFAQDGHADQENDRKAYKDWIL 242
[Close]
BLAST of mRNA_H-elongata_contig131855.2287.1 vs. uniprot
Match: A0A199UA65_MANES (S-methyl-5-thioribose kinase n=4 Tax=Crotonoideae TaxID=235631 RepID=A0A199UA65_MANES)

HSP 1 Score: 94.7 bits (234), Expect = 2.810e-21
Identity = 48/69 (69.57%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   13 QALIHADLHTGSVMAMEGSTQVIDPEFAFYGPMGFDLGAFIGNLLLAYCAVPGNGQG----EAYGEWLL 207
            QALIH DLHTGSVM    STQVIDPEFAFYGPMGFD+GAFIGNL LAY A  G+       ++Y EWLL
Sbjct:  230 QALIHGDLHTGSVMVTSDSTQVIDPEFAFYGPMGFDVGAFIGNLFLAYFAQDGHADSFDDRKSYKEWLL 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131855.2287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH20_9PHAE7.220e-3486.11S-methyl-5-thioribose kinase n=1 Tax=Ectocarpus sp... [more]
A0A7S4CZY1_9EUGL1.270e-2266.22S-methyl-5-thioribose kinase n=1 Tax=Eutreptiella ... [more]
A0A7J8PS49_GOSRA1.820e-2271.01S-methyl-5-thioribose kinase (Fragment) n=4 Tax=Go... [more]
C0P420_MAIZE2.530e-2266.67S-methyl-5-thioribose kinase n=1 Tax=Zea mays TaxI... [more]
A0A803NNN7_CANSA7.780e-2269.57S-methyl-5-thioribose kinase n=5 Tax=Cannabis sati... [more]
UPI000A2B4F5A8.860e-2266.67methylthioribose kinase 1-like n=3 Tax=Arachis Tax... [more]
A0A0D6QSW1_ARACU1.110e-2166.67S-methyl-5-thioribose kinase n=2 Tax=Araucariaceae... [more]
A0A1Z8KZ01_9PROT1.540e-2163.08S-methyl-5-thioribose kinase n=2 Tax=Alphaproteoba... [more]
A0A4S4CX87_CAMSI2.480e-2166.67S-methyl-5-thioribose kinase n=1 Tax=Camellia sine... [more]
A0A199UA65_MANES2.810e-2169.57S-methyl-5-thioribose kinase n=4 Tax=Crotonoideae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131855contigH-elongata_contig131855:44..1176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score97.1
Seed ortholog evalue3.7e-18
Seed eggNOG ortholog4577.GRMZM2G464137_P02
KEGG rclassRC00002,RC00078
KEGG koko:K00899
KEGG ReactionR04143
KEGG Pathwayko00270,ko01100,map00270,map01100
KEGG ModuleM00034
GOsGO:0000096,GO:0000097,GO:0000302,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009719,GO:0009723,GO:0009725,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0019509,GO:0019752,GO:0032870,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042802,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046522,GO:0050896,GO:0051716,GO:0070887,GO:0071241,GO:0071248,GO:0071265,GO:0071267,GO:0071281,GO:0071310,GO:0071369,GO:0071495,GO:0071704,GO:0071731,GO:0071732,GO:0097366,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170
EggNOG free text desc.methylthioribose kinase
EggNOG OGs2QVM3@2759,37IGS@33090,3G7YJ@35493,3IEG9@38820,3KSX4@4447,COG4857@1
EC2.7.1.100
COG Functional cat.E
BiGG ReactioniRC1080.CRv4_Au5_s16_g6522_t1
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929782.7202654-CDS-H-elongata_contig131855:43..1841622929782.7202654-CDS-H-elongata_contig131855:43..184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131855 44..184 -
1691679155.689994-CDS-H-elongata_contig131855:43..1841691679155.689994-CDS-H-elongata_contig131855:43..184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131855 44..184 -
1622929782.7958937-CDS-H-elongata_contig131855:1101..11761622929782.7958937-CDS-H-elongata_contig131855:1101..1176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131855 1102..1176 -
1691679155.7025669-CDS-H-elongata_contig131855:1101..11761691679155.7025669-CDS-H-elongata_contig131855:1101..1176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131855 1102..1176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131855.2287.1prot_H-elongata_contig131855.2287.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131855 44..1176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131855.2287.1

>prot_H-elongata_contig131855.2287.1 ID=prot_H-elongata_contig131855.2287.1|Name=mRNA_H-elongata_contig131855.2287.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
VVSPQALIHADLHTGSVMAMEGSTQVIDPEFAFYGPMGFDLGAFIGNLLL
AYCAVPGNGQGEAYGEWLLGQV
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mRNA from alignment at H-elongata_contig131855:44..1176-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131855.2287.1 ID=mRNA_H-elongata_contig131855.2287.1|Name=mRNA_H-elongata_contig131855.2287.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1133bp|location=Sequence derived from alignment at H-elongata_contig131855:44..1176- (Himanthalia elongata Himel1 dioecious)
GTCGTCTCCCCGCAGGCCCTTATCCACGCCGACTTGCACACCGGCTCTGT
GATGGCCATGGAAGGTTCCACTCAGGTGATGCACTAGCGTGGCGTATATT
GAATGCTTCGTAGATCATTGCTTACTTACGGTACGGCGCTTAAGACTCTT
GGATCTTTGTGGGATTCGTTGAATACGCCATTGAAATAAATTACGTAATA
TCCCTGGGGTTTCTACTTCATCTTGTGATATGGAGCAATCAATACTTGTA
TATTGCTTCCGTTTTCCTCTTCAGTGCTCGCAGAGAGCAAACGCATGTCA
AGTATACTTATGCTTTGTTCCCCTCGAAAGGACATGCTGGCGGAGAACTC
CCCGAAATGGGGCTGTGAGGAATCGGTCACCTTGTCCGACGGACGAGTCT
AATCTATAGCCGTTGAAACGTACCTATATGAAGTATAGCGATATGGGATG
ACTTTGCAGCATCTAGAGAATAGTGTTTGTTTCGTTTGTTTTTCAAGGCG
GTTGCTGTAACACTTCTACTTGTACAAGACATTTTATCGGGAAGGCGGGA
AGACCGCGGATAGTTTCGCTTGTTTCTTTGTGGCTTTCACCTGGTCGAAT
ACACCCCAATACGAACGTGGGAAGATCGTGTCGATATTTATCACGACCGC
GGTGACGAACAAACGCGCTTATTCAAAACAACCCGAGACATACTTCATAC
CCTGGTAATTTTTAGCGCCCCATGCCGCAGTGAACAAGCCACTCACAGGG
AAAGGCACGTAATGCGTAGTTCGATGTCTTAAGTGTTTTTGTTTTACTTC
TCCTTCTCCCGCCATCTCATGTTATGGTGAAAATATGAAGTAGAAAACAC
CAGGGAAAATCCACAGTCATCATCACCGGCGCTACCACCCACGTGCTGCG
AGACTCGCGTTTTGCTGTCTCTTCTTTTGAGCACAAAACACCCTCTACCT
ATCTCCTGACCGCGCGTACTATGAATAAACGACGATATAAAGGTTATCGA
TCCCGAGTTTGCCTTTTACGGTCCAATGGGCTTCGACCTCGGGGCGTTCA
TTGGAAACCTGCTCCTGGCCTACTGCGCGGTGCCCGGCAACGGCCAGGGG
GAGGCCTATGGAGAGTGGTTGCTGGGGCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig131855:44..1176-

>mRNA_H-elongata_contig131855.2287.1 ID=mRNA_H-elongata_contig131855.2287.1|Name=mRNA_H-elongata_contig131855.2287.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig131855:44..1176- (Himanthalia elongata Himel1 dioecious)
GTCGTCTCCCCGCAGGCCCTTATCCACGCCGACTTGCACACCGGCTCTGT
GATGGCCATGGAAGGTTCCACTCAGGTCGTCTCCCCGCAGGCCCTTATCC
ACGCCGACTTGCACACCGGCTCTGTGATGGCCATGGAAGGTTCCACTCAG
GTTATCGATCCCGAGTTTGCCTTTTACGGTCCAATGGGCTTCGACCTCGG
GGCGTTCATTGGAAACCTGCTCCTGGCCTACTGCGCGGTGCCCGGCAACG
GCCAGGGGGAGGCCTATGGAGAGTGGTTGCTGGGGCAGGTGGTTATCGAT
CCCGAGTTTGCCTTTTACGGTCCAATGGGCTTCGACCTCGGGGCGTTCAT
TGGAAACCTGCTCCTGGCCTACTGCGCGGTGCCCGGCAACGGCCAGGGGG
AGGCCTATGGAGAGTGGTTGCTGGGGCAGGTG
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