mRNA_H-elongata_contig131465.2270.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131465.2270.1
Unique NamemRNA_H-elongata_contig131465.2270.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig131465.2270.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 9.420e-11
Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    7 RWVCDTGASQHFSNDSGHMLDFRECQKFMRTASGNRFPIEGHGDLILHFRSEGEVVHLKLRNIAYVPQLSHNWVSL 234
            R V DTGA+ H   +S   + + EC + +R A+G  FPI G+GD+ +   S G    L L+ +A+VP+L +N VSL
Sbjct:  394 RCVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRGGTTDLLLKRVAHVPRLDYNLVSL 469
[Close]
BLAST of mRNA_H-elongata_contig131465.2270.1 vs. uniprot
Match: A0A6H5L142_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L142_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.320e-10
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    7 RWVCDTGASQHFSNDSGHMLDFRECQKFMRTASGNRFPIEGHGDLILHFRSEGEVVHLKLRNIAYVPQLSHNWVSL 234
            R+V DTGA+ H   +S   + + EC + +R A+G  FPI G+GD+ +   S      L L+ +A+VP+L +N VSL
Sbjct:  233 RYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSL 308
[Close]
BLAST of mRNA_H-elongata_contig131465.2270.1 vs. uniprot
Match: A0A6H5KGB7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.370e-10
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    7 RWVCDTGASQHFSNDSGHMLDFRECQKFMRTASGNRFPIEGHGDLILHFRSEGEVVHLKLRNIAYVPQLSHNWVSL 234
            R+V DTGA+ H   +S   + + EC + +R A+G  FPI G+GD+ +   S      L L+ +A+VP+L +N VSL
Sbjct:  325 RYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSL 400
[Close]
BLAST of mRNA_H-elongata_contig131465.2270.1 vs. uniprot
Match: A0A6H5JNW8_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNW8_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.390e-10
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    7 RWVCDTGASQHFSNDSGHMLDFRECQKFMRTASGNRFPIEGHGDLILHFRSEGEVVHLKLRNIAYVPQLSHNWVSL 234
            R+V DTGA+ H   +S   + + EC + +R A+G  FPI G+GD+ +   S      L L+ +A+VP+L +N VSL
Sbjct:  249 RYVADTGAATHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSL 324
[Close]
BLAST of mRNA_H-elongata_contig131465.2270.1 vs. uniprot
Match: A0A6H5KX24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX24_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.400e-10
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    7 RWVCDTGASQHFSNDSGHMLDFRECQKFMRTASGNRFPIEGHGDLILHFRSEGEVVHLKLRNIAYVPQLSHNWVSL 234
            R+V DTGA+ H   +S   + + EC + +R A+G  FPI G+GD+ +   S      L L+ +A+VP+L +N VSL
Sbjct:  384 RYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSL 459
[Close]
BLAST of mRNA_H-elongata_contig131465.2270.1 vs. uniprot
Match: A0A6H5JEW4_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEW4_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.410e-10
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    7 RWVCDTGASQHFSNDSGHMLDFRECQKFMRTASGNRFPIEGHGDLILHFRSEGEVVHLKLRNIAYVPQLSHNWVSL 234
            R+V DTGA+ H   +S   + + EC + +R A+G  FPI G+GD+ +   S      L L+ +A+VP+L +N VSL
Sbjct:  186 RYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSL 261
[Close]
BLAST of mRNA_H-elongata_contig131465.2270.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.420e-10
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    7 RWVCDTGASQHFSNDSGHMLDFRECQKFMRTASGNRFPIEGHGDLILHFRSEGEVVHLKLRNIAYVPQLSHNWVSL 234
            R+V DTGA+ H   +S   + + EC + +R A+G  FPI G+GD+ +   S      L L+ +A+VP+L +N VSL
Sbjct:  368 RYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSL 443
[Close]
BLAST of mRNA_H-elongata_contig131465.2270.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.420e-10
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    7 RWVCDTGASQHFSNDSGHMLDFRECQKFMRTASGNRFPIEGHGDLILHFRSEGEVVHLKLRNIAYVPQLSHNWVSL 234
            R+V DTGA+ H   +S   + + EC + +R A+G  FPI G+GD+ +   S      L L+ +A+VP+L +N VSL
Sbjct:  381 RYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSL 456
[Close]
BLAST of mRNA_H-elongata_contig131465.2270.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.420e-10
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    7 RWVCDTGASQHFSNDSGHMLDFRECQKFMRTASGNRFPIEGHGDLILHFRSEGEVVHLKLRNIAYVPQLSHNWVSL 234
            R+V DTGA+ H   +S   + + EC + +R A+G  FPI G+GD+ +   S      L L+ +A+VP+L +N VSL
Sbjct:  524 RYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSL 599
[Close]
BLAST of mRNA_H-elongata_contig131465.2270.1 vs. uniprot
Match: A0A6H5J894_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J894_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 6.170e-10
Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    7 RWVCDTGASQHFSNDSGHMLDFRECQKFMRTASGNRFPIEGHGDLILHFRSEGEVVHLKLRNIAYVPQLSHNWVSL 234
            ++V DTGA+ H   +S   + + EC + +R A+G  FPI G+GD+ +   S      L L+ +A+VP+L +N VSL
Sbjct:  381 KYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSL 456
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131465.2270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5JXF7_9PHAE9.420e-1140.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L142_9PHAE2.320e-1039.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGB7_9PHAE2.370e-1039.47CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JNW8_9PHAE2.390e-1039.47CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KX24_9PHAE2.400e-1039.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEW4_9PHAE2.410e-1039.47CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JZQ8_9PHAE2.420e-1039.47Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.420e-1039.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.420e-1039.47Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5J894_9PHAE6.170e-1038.16Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131465contigH-elongata_contig131465:166..402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929780.8931725-CDS-H-elongata_contig131465:165..4021622929780.8931725-CDS-H-elongata_contig131465:165..402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131465 166..402 -
1691679155.0444813-CDS-H-elongata_contig131465:165..4021691679155.0444813-CDS-H-elongata_contig131465:165..402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131465 166..402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131465.2270.1prot_H-elongata_contig131465.2270.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131465 166..402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131465.2270.1

>prot_H-elongata_contig131465.2270.1 ID=prot_H-elongata_contig131465.2270.1|Name=mRNA_H-elongata_contig131465.2270.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
DERWVCDTGASQHFSNDSGHMLDFRECQKFMRTASGNRFPIEGHGDLILH
FRSEGEVVHLKLRNIAYVPQLSHNWVSLR
back to top

mRNA from alignment at H-elongata_contig131465:166..402-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131465.2270.1 ID=mRNA_H-elongata_contig131465.2270.1|Name=mRNA_H-elongata_contig131465.2270.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig131465:166..402- (Himanthalia elongata Himel1 dioecious)
GACGAGCGTTGGGTGTGTGACACCGGCGCTTCGCAGCATTTCAGCAATGA
CTCTGGGCACATGCTCGATTTCCGCGAATGCCAAAAATTTATGCGTACGG
CTAGCGGAAATAGATTCCCGATCGAGGGTCACGGTGACCTTATCTTGCAC
TTTCGGTCTGAAGGAGAGGTGGTACATCTCAAGCTTCGCAATATAGCGTA
TGTGCCACAACTCTCTCACAATTGGGTATCACTAAGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig131465:166..402-

>mRNA_H-elongata_contig131465.2270.1 ID=mRNA_H-elongata_contig131465.2270.1|Name=mRNA_H-elongata_contig131465.2270.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig131465:166..402- (Himanthalia elongata Himel1 dioecious)
GACGAGCGTTGGGTGTGTGACACCGGCGCTTCGCAGCATTTCAGCAATGA
CTCTGGGCACATGCTCGATTTCCGCGAATGCCAAAAATTTATGCGTACGG
CTAGCGGAAATAGATTCCCGATCGAGGGTCACGGTGACCTTATCTTGCAC
TTTCGGTCTGAAGGAGAGGTGGTACATCTCAAGCTTCGCAATATAGCGTA
TGTGCCACAACTCTCTCACAATTGGGTATCACTAAGAGACGAGCGTTGGG
TGTGTGACACCGGCGCTTCGCAGCATTTCAGCAATGACTCTGGGCACATG
CTCGATTTCCGCGAATGCCAAAAATTTATGCGTACGGCTAGCGGAAATAG
ATTCCCGATCGAGGGTCACGGTGACCTTATCTTGCACTTTCGGTCTGAAG
GAGAGGTGGTACATCTCAAGCTTCGCAATATAGCGTATGTGCCACAACTC
TCTCACAATTGGGTATCACTAAGA
back to top