mRNA_H-elongata_contig13126.2258.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13126.2258.1
Unique NamemRNA_H-elongata_contig13126.2258.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13126.2258.1 vs. uniprot
Match: D8LI66_ECTSI (Similar to HemK methyltransferase family member 1 isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI66_ECTSI)

HSP 1 Score: 335 bits (860), Expect = 1.860e-112
Identity = 183/297 (61.62%), Postives = 207/297 (69.70%), Query Frame = 1
Query:    4 LRAAQHVPVQYLVGEWDFHQLSLEMKPPTLIPRPEMEELVEVILRWVRRELTAADGGDTLGRGTAEGGDGG----GDE--LRFLDVGSGTGAIGLALLKELP-GATCVAIDVQEPAVALSRRNAERNGLNGRYSCLHS----------GGLP---------------GVNEENFEGTFDFIVSNPPYIPKKDMAELPPDVAHHEDSIALDGGEDGLDVVREIIRRCPRLLKKGGPRQLWMEVDTSHPEAIQRWLGLRVG----QHGVQESHVNGVTMLEWLSDMSQRPRFVILTFAE 786
            LRA QHVPVQYLVGEWDF+ L+LEM PPTLIPRPE EELVE+IL+W+R ++  A   D      A GGDG      DE  +RFLDVGSGTGA+GLALL ELP GA CVA+D QE AV LSRRNA R GL  RYSC H+          G +                G  + + +G+FDF+VSNPPYIP +DM  LP DVA HEDS+ALDGGEDGLDVVR+I+R CPRLL+KGGPRQLWMEVDTSHPEA+QRWLGL VG      G QE    GV   EW+ DMSQRPRFV LTFAE
Sbjct:   30 LRAVQHVPVQYLVGEWDFYGLTLEMAPPTLIPRPETEELVEMILKWLRPDVMNAIAVDRAADAPAAGGDGADSSSSDESGMRFLDVGSGTGALGLALLGELPSGARCVAVDTQESAVRLSRRNAARTGLQARYSCFHAAVAELAPSEKGSVTTPAIDRPPRSSVEKGGREDLDLDGSFDFVVSNPPYIPTRDMEGLPRDVADHEDSVALDGGEDGLDVVRDIVRLCPRLLRKGGPRQLWMEVDTSHPEAMQRWLGLEVGLGEGAGGSQECRARGVAKFEWMRDMSQRPRFVRLTFAE 326          
BLAST of mRNA_H-elongata_contig13126.2258.1 vs. uniprot
Match: A0A6H5KUS7_9PHAE (Methyltranfer_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS7_9PHAE)

HSP 1 Score: 333 bits (854), Expect = 6.460e-109
Identity = 182/305 (59.67%), Postives = 205/305 (67.21%), Query Frame = 1
Query:    4 LRAAQHVPVQYLVGEWDFHQLSLEMKPPTLIPRPEMEELVEVILRWVRRELTAADGGDTLGRGT--------------AEGGDGGGDELRFLDVGSGTGAIGLALLKELP-GATCVAIDVQEPAVALSRRNAERNGLNGRYSCLH-----------------------SGGLP--GVNEENFEGTFDFIVSNPPYIPKKDMAELPPDVAHHEDSIALDGGEDGLDVVREIIRRCPRLLKKGGPRQLWMEVDTSHPEAIQRWLGLRVGQH----GVQESHVNGVTMLEWLSDMSQRPRFVILTFAE 786
            LRA QHVPVQYLVGEWDF+ LSLEM PPTLIPRPE EELVE+IL+W+R ++  A   D    G               A+   G    +RFLDVGSGTGA+GLALL ELP GA CVA+D QE AV LSRRNA R GL  RYSC H                       S G+   G  + +F+G+FDF+VSNPPYIP +DM  LP DVA HEDS+ALDGGEDGLDVVR+I+R CPRLL+KGGPRQLWMEVDTSHPEA+QRWLGL VG      G QE    GV   EW+ DMSQRPRFV LTFAE
Sbjct:  215 LRAVQHVPVQYLVGEWDFYGLSLEMAPPTLIPRPETEELVEMILKWLRPDVMNAIAVDRAAAGXXXXXXXXXXXXXXXADSSSGDESGMRFLDVGSGTGALGLALLGELPLGARCVAVDTQESAVRLSRRNAARTGLQARYSCFHAAVAELAPRENGSATTPAIDRPQSSGVEKGGRGDLDFDGSFDFVVSNPPYIPTRDMGSLPRDVADHEDSVALDGGEDGLDVVRDIVRLCPRLLRKGGPRQLWMEVDTSHPEAMQRWLGLEVGLDEGAGGSQECRAQGVAKFEWMRDMSQRPRFVRLTFAE 519          
BLAST of mRNA_H-elongata_contig13126.2258.1 vs. uniprot
Match: A0A0M0JRK9_9EUKA (Peptide chain release factor N(5)-glutamine methyltransferase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JRK9_9EUKA)

HSP 1 Score: 240 bits (612), Expect = 7.150e-75
Identity = 135/256 (52.73%), Postives = 161/256 (62.89%), Query Frame = 1
Query:    1 CLRAAQHVPVQYLVGEWDFHQLSLEMKPPTLIPRPEMEELVEVILRWVRRELTAADGGDTLGRGTAEGGDGGGDELRFLDVGSGTGAIGLALLKELPGATCVAIDVQEPAVALSRRNAERNGLNGRY-SCLHSGGLPGVNEENFEGTFDFIVSNPPYIPKKDMAELPPDVAHHEDSIALDGGEDGLDVVREIIRRCPRLLKKGGPRQLWMEVDTSHPEAIQRWLGLRVGQHGVQESHVNGVTMLEWLSDMSQRPRF 765
            C R  + VPVQY++G+WDFH L+LEM+PP LIPRPE EELVE +L  +       D   T GRG     D     +  LDVG GTGAIGLALL  LP A CV ID+   A ALS+ NAER GL+ RY S L  GG+     +     FD IVSNPPYIP+ DMA L P+VA HED+ AL GG DGLDVVRE++   PRLL+  GPR +W+EVDTSHP  I+RWLG         E    G+ M+ W+ D   RPRF
Sbjct:   89 CKRRFERVPVQYILGDWDFHDLTLEMRPPVLIPRPETEELVEHVLEAL------GDDHRTGGRGARRSSD-----IDILDVGCGTGAIGLALLNRLPNARCVGIDICPTAHALSKANAERCGLSARYESLLVDGGIAAC--DLAPRRFDVIVSNPPYIPRADMATLEPEVAWHEDAGALCGGSDGLDVVRELLLATPRLLRADGPRSIWLEVDTSHPPVIERWLG---------EQAALGLQMVRWMRDAYGRPRF 322          
BLAST of mRNA_H-elongata_contig13126.2258.1 vs. uniprot
Match: A0A7S4C115_CHRCT (Peptide chain release factor N(5)-glutamine methyltransferase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C115_CHRCT)

HSP 1 Score: 218 bits (556), Expect = 2.430e-64
Identity = 123/261 (47.13%), Postives = 155/261 (59.39%), Query Frame = 1
Query:    1 CLRAAQHVPVQYLVGEWDFHQLSLEMKPPTLIPRPEMEELVEVILRWVRRELTAADGGDTLGRGTAEGGDGGGDELRFLDVGSGTGAIGLALLKELPGATCVAIDVQEPAVALSRRNAERNGLNGRYSC-LHSGGLPGVNEENFEGTFDFIVSNPPYIPKKDMAELPPDVAHHEDSIALDGGEDGLDVVREIIRRCPRLLKKGGPRQLWMEVDTSHPEAIQRWLGLRVGQHGVQESHVNGVTMLEWLSDMSQRPRFVILTF 780
            C      +PVQY++G+WDFH+L+L ++PP LIPRPE EELVE++L   R    +A                    L  LDVG G+GAIGLALL ++  ATC+ ID+ E AV L+RRNA    L GRYS  L +GG+    E      FD IVSNPPYIP+ DM  L P+VA  ED  AL GG+DGLDVVR+I+   PRLL+ GG   +W+EVD SHP  ++RWL    G  GV  S V  V       D+  RPRF +L +
Sbjct:  242 CTARLGRMPVQYILGDWDFHELTLLVEPPVLIPRPETEELVELVLAAQRSSPASA-------------------ALNLLDVGCGSGAIGLALLSQMDDATCIGIDISEKAVDLARRNAISLDLEGRYSAVLDAGGVASFAESEQTPRFDVIVSNPPYIPQADMESLEPEVAGFEDRRALCGGDDGLDVVRQIVHAAPRLLRSGGQGTIWLEVDPSHPPLLERWLNGGDGDLGV--SFVRSV------EDLYGRPRFCVLQY 475          
BLAST of mRNA_H-elongata_contig13126.2258.1 vs. uniprot
Match: R1FNS3_EMIHU (HemK methyltransferase family member 1 n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FNS3_EMIHU)

HSP 1 Score: 207 bits (527), Expect = 2.100e-63
Identity = 112/224 (50.00%), Postives = 137/224 (61.16%), Query Frame = 1
Query:    1 CLRAAQHVPVQYLVGEWDFHQLSLEMKPPTLIPRPEMEELVEVILRWVRRELTAADGGDTLGRGTAEGGDGGGDELRFLDVGSGTGAIGLALLKELPGATCVAIDVQEPAVALSRRNAERNGLNGRYSCLH-SGGLPGVNEENFEGTFDFIVSNPPYIPKKDMAELPPDVAHHEDSIALDGGEDGLDVVREIIRRCPRLLKKGGPRQLWMEVDTSHPEAIQRWL 669
            C R     PVQY++G+WDF  L+LE++PP LIPRPE E LVE++ +                          GD   FLDVG GTGAIGLALL  LP A CV IDV   A AL+ RNAE  GL+ RYS     GG+        +  FD +VSNPPYIP+ D  +L P+VA HED  AL GG+DGLDVVRE++   PRLL++GGPR +W+EVD SHP  I+ WL
Sbjct:    2 CARRLAREPVQYILGDWDFMDLTLEVRPPVLIPRPETEGLVELVAQAH------------------------GDAAAFLDVGCGTGAIGLALLSRLPAARCVGIDVSASAAALAARNAELCGLDDRYSAAAVDGGVAAWRPS--DQRFDVVVSNPPYIPRADYEQLEPEVAGHEDERALCGGDDGLDVVREVLLAAPRLLRQGGPRAVWLEVDPSHPPLIEAWL 199          
BLAST of mRNA_H-elongata_contig13126.2258.1 vs. uniprot
Match: A0A0G4EHU7_VITBC (Peptide chain release factor N(5)-glutamine methyltransferase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EHU7_VITBC)

HSP 1 Score: 198 bits (503), Expect = 5.850e-59
Identity = 117/265 (44.15%), Postives = 150/265 (56.60%), Query Frame = 1
Query:    1 CLRAAQHVPVQYLVGEWDFHQLSLEMKPPTLIPRPEMEELVEVILRWVRRELTAADGGDTLGRGTAEGGDGGGDELRFLDVGSGTGAIGLALLKELPGATCVAIDVQEPAVALSRRNAERNGLNGRYSCLHSGGLPGVNEENFEGTFDFIVSNPPYIPKKDMAELPPDVAHHEDSIALDGGEDGLDVVREIIRRCPRLLK---KGGPRQLWMEVDTSHPEAIQRWLGLRVGQHGVQESHVNGVTMLEWLSDMSQRPRFVILTFAE 786
            C +  + +PVQY+VG WDFH +S++ +PP LIPRPE EELVE+IL  VRR +          RG           L  LDVG+GTGAIGLALLK+LP A C AID+   AV L+  NA    L  RY CL +  L    E   +  +D IVSNPPYIP  ++  L P+V  +EDS ALDGG DG+  +R +  R    LK   +GG RQ+W+E D+SHPE +Q  +  R G           V  ++W  D+    RFV L  AE
Sbjct:   56 CAKRLRRMPVQYVVGRWDFHHISVKCEPPVLIPRPETEELVELILEEVRRSV----------RGERA--------LHLLDVGAGTGAIGLALLKQLPTARCTAIDLSPHAVRLASANAATLSLADRYKCLQADML--TFEPPDDERYDLIVSNPPYIPTAEIPTLQPEVRDYEDSGALDGGADGMFFIRSLASRMAAFLKPHGQGGMRQVWLETDSSHPEVLQGAVAKRDGSGDFG----GRVVSMQWWRDLGGHSRFVRLDMAE 296          
BLAST of mRNA_H-elongata_contig13126.2258.1 vs. uniprot
Match: A0A7S4NLJ6_9EUKA (Peptide chain release factor N(5)-glutamine methyltransferase n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4NLJ6_9EUKA)

HSP 1 Score: 196 bits (499), Expect = 7.200e-58
Identity = 106/222 (47.75%), Postives = 137/222 (61.71%), Query Frame = 1
Query:    1 CLRAAQHVPVQYLVGEWDFHQLSLEMKPPTLIPRPEMEELVEVILRWVRRELTAADGGDTLGRGTAEGGDGGGDELRFLDVGSGTGAIGLALLKELPGATCVAIDVQEPAVALSRRNAERNGLNGRY-SCLHSGGLPGVNEENFEGTFDFIVSNPPYIPKKDMAELPPDVAHHEDSIALDGGEDGLDVVREIIRRCPRLLKKGGPRQLWMEVDTSHPEAIQR 663
            C +  + VPVQY++G+WDFH+L+L + PP LIPRPE E+LVE++L        A                     LRFLDVG G+GAIGLALL ++  A CV +D++  A  L+ RNAE  GL  RY + L +GG+         G FD IVSNPPYIPK DMA L P+V  HED  AL GG DGLDVVR+++   P  L++ GPR +W+EVD SHP  I++
Sbjct:  103 CGQRLRRVPVQYILGDWDFHELTLSVAPPVLIPRPETEQLVELVLEAHGAARAAP--------------------LRFLDVGCGSGAIGLALLHKMQRADCVGLDIRSEATELATRNAEALGLAARYRAVLVAGGIAHF-PSGESGAFDVIVSNPPYIPKADMATLEPEVVDHEDEGALCGGADGLDVVRQLLVAAPMQLRRDGPRAIWLEVDPSHPPLIEQ 303          
BLAST of mRNA_H-elongata_contig13126.2258.1 vs. uniprot
Match: A0A2B4RYK0_STYPI (Peptide chain release factor N(5)-glutamine methyltransferase n=3 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RYK0_STYPI)

HSP 1 Score: 192 bits (488), Expect = 3.560e-56
Identity = 108/259 (41.70%), Postives = 146/259 (56.37%), Query Frame = 1
Query:    1 CLRAAQHVPVQYLVGEWDFHQLSLEMKPPTLIPRPEMEELVEVILRWVRRELTAADGGDTLGRGTAEGGDGGGDELRFLDVGSGTGAIGLALLKELPGATCVAIDVQEPAVALSRRNAERNGLNGRYSCLHSGGLPGVNEENFEGTFDFIVSNPPYIPKKDMAELPPDVAHHEDSIALDGGEDGLDVVREIIRRCPRLLKKGGPRQLWMEVDTSHPEAIQRWLGLRVGQHGVQESHVNGVTMLEWLSDMSQRPRFVILT 777
            C +    VPVQY++GEW+F  L+L MKPP  IPRPE EEL++++     ++ T                  GGD   FL++G G+GAI L+LL E    TCVAID  + AV L+R NA R  ++ R   LH+  L  V        FD I+SNPPYIP KDMA L P+++ +ED  AL GG DGLDV+R+I+R  P LLK G    +W+EVD SHP+ I  W+            +  G+      +D ++RPRF  +T
Sbjct:  109 CHQRLHRVPVQYIIGEWEFRHLTLAMKPPVFIPRPETEELIDLVAEHHVQDET------------------GGDSFSFLEIGCGSGAICLSLLTEFSKTTCVAIDKNKAAVNLTRNNANRCNVSDRIELLHAD-LQSVLPLLGSRKFDAIISNPPYIPAKDMALLQPEISRYEDEHALCGGPDGLDVIRDILRISPVLLKPGRRSSVWLEVDISHPKLIDEWIS----------GNELGLNYSATFNDFTRRPRFCHIT 338          
BLAST of mRNA_H-elongata_contig13126.2258.1 vs. uniprot
Match: A0A6P4YY08_BRABE (Peptide chain release factor N(5)-glutamine methyltransferase n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YY08_BRABE)

HSP 1 Score: 190 bits (483), Expect = 9.240e-55
Identity = 110/262 (41.98%), Postives = 150/262 (57.25%), Query Frame = 1
Query:    1 CLRAAQHVPVQYLVGEWDFHQLSLEMKPPTLIPRPEMEELVEVILRWVRRELTAADGGDTLGRGTAEGGDGGGDELRFLDVGSGTGAIGLALLKELPGATCVAIDVQEPAVALSRRNAERNGLNGRYSCLHSGGLPGVNEENFEGTFDFIVSNPPYIPKKDMAELPPDVAHHEDSIALDGGEDGLDVVREIIRRCPRLLKKGGPRQLWMEVDTSHPEAIQRWLGLRVGQHGVQESHVNGVTMLEWLSDMSQRPRFVILTFAE 786
            C +  + +P+QY++GEWDF  L+L M+PP  IPRPE EELVE +  +++ +LT  +                 DEL  L+VG G+GAI L+LL+E P A C A+D+ + AV L++ NAER GL+GR        +      +FE  FD IVSNPPYI  +DM  L  +VA +E+  AL GG DG+ V+R+II    RLLK GG   +W+EVD  HP+ IQ +L      H   + H+ GV       D + RPRF  L   E
Sbjct:  170 CQKRMKRMPIQYILGEWDFRDLNLIMRPPVFIPRPETEELVEHLWMYIQEDLTRQE-----------------DELAILEVGCGSGAISLSLLQEFPQAHCTAVDMTKEAVELTQHNAERLGLSGRLDVKQ---MQFNTSADFETKFDVIVSNPPYIWTQDMETLEREVAGYENYCALHGGTDGMGVIRDIIHTGHRLLKPGG--SIWLEVDPRHPDMIQTYLH----NHLQYQLHLTGV-----YQDFNNRPRFCCLELRE 400          
BLAST of mRNA_H-elongata_contig13126.2258.1 vs. uniprot
Match: A0A835YWT7_9STRA (PrmC_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWT7_9STRA)

HSP 1 Score: 199 bits (505), Expect = 2.110e-54
Identity = 124/279 (44.44%), Postives = 158/279 (56.63%), Query Frame = 1
Query:    1 CLRAAQHVPVQYLVGEWDFHQLSLEMKPPTLIPRPEMEELVEVILRWVRRELTAADGGDTLGRGTAEGGDGGGDELRFLDVGSGTG-------------AIGLALLKELPGATCVAIDVQEPAVALSRRNAERNGLNGRYSCLHSGGLPGVNEENFEGTFDFIVSNPPYIPKKDMAELPPDVAHHEDSIALDGGE-DGLDVVREIIRRCPRLL---KKGGPRQLWMEVDTSHPEAIQRWLGLRVGQHGVQESHVNGVTMLEWLSDMSQRPRFVILTFAE 786
            C   A  +P+QY++GEWD+H L+L ++PP LIPRPE E+LVE +L W+RR     +        TA         LRFLDVGSGTG             AIGLALL  LPGA CVA DV   AV LS  NA + G+  RY+C+ S     +      G F FIVSNPPYIP++DMA L  DV   ED  AL GG  DGL VVRE++ + P LL    +GG R +W+EVD+SHP  +++W G    Q  ++E         EW  D+   PR+V L  A+
Sbjct: 1116 CRLRATRMPLQYIMGEWDWHDLALLVRPPVLIPRPETEDLVERVLDWLRRTCPERER-------TA---------LRFLDVGSGTGEHQSEPSVEQCCSAIGLALLNRLPGAMCVACDVSADAVRLSLENASKVGVADRYACVLSP-ASSLQPPPPGGAFHFIVSNPPYIPQRDMAGLDEDVRGFEDWGALCGGAGDGLGVVREVVTKAPSLLLPTSEGGLRHIWLEVDSSHPPLMEQWQG----QGLIEEC--------EWFRDLGGHPRYVKLKLAD 1365          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13126.2258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI66_ECTSI1.860e-11261.62Similar to HemK methyltransferase family member 1 ... [more]
A0A6H5KUS7_9PHAE6.460e-10959.67Methyltranfer_dom domain-containing protein n=1 Ta... [more]
A0A0M0JRK9_9EUKA7.150e-7552.73Peptide chain release factor N(5)-glutamine methyl... [more]
A0A7S4C115_CHRCT2.430e-6447.13Peptide chain release factor N(5)-glutamine methyl... [more]
R1FNS3_EMIHU2.100e-6350.00HemK methyltransferase family member 1 n=1 Tax=Emi... [more]
A0A0G4EHU7_VITBC5.850e-5944.15Peptide chain release factor N(5)-glutamine methyl... [more]
A0A7S4NLJ6_9EUKA7.200e-5847.75Peptide chain release factor N(5)-glutamine methyl... [more]
A0A2B4RYK0_STYPI3.560e-5641.70Peptide chain release factor N(5)-glutamine methyl... [more]
A0A6P4YY08_BRABE9.240e-5541.98Peptide chain release factor N(5)-glutamine methyl... [more]
A0A835YWT7_9STRA2.110e-5444.44PrmC_N domain-containing protein n=1 Tax=Tribonema... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13126contigH-elongata_contig13126:4064..4936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.8
Seed ortholog evalue4.5e-90
Seed eggNOG ortholog2880.D8LI66
Preferred nameHEMK1
KEGG rclassRC00003,RC03279
KEGG koko:K02493
KEGG ReactionR10806
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.hemK methyltransferase family member 1
EggNOG OGsCOG2890@1,KOG2904@2759
EC2.1.1.297
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03012
Hectar predicted targeting categoryother localisation
Exons2
Model size786
Cds size786
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929779.7611773-CDS-H-elongata_contig13126:4063..44541622929779.7611773-CDS-H-elongata_contig13126:4063..4454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13126 4064..4454 -
1691679154.6256773-CDS-H-elongata_contig13126:4063..44541691679154.6256773-CDS-H-elongata_contig13126:4063..4454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13126 4064..4454 -
1622929779.7736084-CDS-H-elongata_contig13126:4541..49361622929779.7736084-CDS-H-elongata_contig13126:4541..4936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13126 4542..4936 -
1691679154.6363714-CDS-H-elongata_contig13126:4541..49361691679154.6363714-CDS-H-elongata_contig13126:4541..4936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13126 4542..4936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13126.2258.1prot_H-elongata_contig13126.2258.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13126 4064..4936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13126.2258.1

>prot_H-elongata_contig13126.2258.1 ID=prot_H-elongata_contig13126.2258.1|Name=mRNA_H-elongata_contig13126.2258.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=262bp
CLRAAQHVPVQYLVGEWDFHQLSLEMKPPTLIPRPEMEELVEVILRWVRR
ELTAADGGDTLGRGTAEGGDGGGDELRFLDVGSGTGAIGLALLKELPGAT
CVAIDVQEPAVALSRRNAERNGLNGRYSCLHSGGLPGVNEENFEGTFDFI
VSNPPYIPKKDMAELPPDVAHHEDSIALDGGEDGLDVVREIIRRCPRLLK
KGGPRQLWMEVDTSHPEAIQRWLGLRVGQHGVQESHVNGVTMLEWLSDMS
QRPRFVILTFAE
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mRNA from alignment at H-elongata_contig13126:4064..4936-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13126.2258.1 ID=mRNA_H-elongata_contig13126.2258.1|Name=mRNA_H-elongata_contig13126.2258.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=873bp|location=Sequence derived from alignment at H-elongata_contig13126:4064..4936- (Himanthalia elongata Himel1 dioecious)
TGTCTCAGAGCGGCTCAACATGTACCGGTTCAGTACCTTGTCGGGGAGTG GGACTTCCACCAGCTCTCGCTTGAGATGAAACCGCCTACGCTTATACCTC GCCCTGAGATGGAAGAACTGGTGGAAGTTATTCTCCGGTGGGTTCGTCGG GAGCTGACAGCCGCTGATGGAGGTGATACTCTTGGCAGGGGCACTGCCGA GGGTGGCGACGGCGGTGGTGACGAGCTACGTTTCCTTGACGTAGGGTCGG GGACAGGGGCGATCGGACTCGCACTTCTCAAGGAGCTCCCTGGCGCTACT TGCGTGGCGATCGACGTCCAAGAGCCCGCCGTTGCGCTATCCCGTCGAAA CGCTGAGCGTAATGGGTTGAACGGCCGGTACTCTTGCTTGCACTCGTCCG TCGCCGACTTTGGGAGCGACGCTGCAACACAACATAAAAATATGGCAAAT GTCGACTTAGGTTGCGGCTCTTCCCAACACAGCGGAGGTCTACCAGGCGT AAATGAAGAGAATTTCGAAGGTACTTTTGACTTCATCGTCAGCAACCCGC CCTACATTCCTAAAAAAGATATGGCAGAACTACCGCCCGATGTCGCTCAC CACGAGGATAGCATTGCACTTGACGGAGGCGAAGATGGACTGGACGTAGT GCGTGAAATCATTCGAAGGTGTCCGCGATTGCTCAAGAAAGGCGGCCCGC GGCAGTTATGGATGGAGGTTGACACGTCCCACCCCGAGGCCATTCAGCGA TGGTTGGGTTTGAGGGTGGGACAACACGGGGTGCAGGAGAGCCACGTAAA CGGAGTGACGATGCTCGAGTGGTTAAGCGACATGTCACAGCGCCCACGGT TCGTAATACTTACATTTGCCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig13126:4064..4936-

>mRNA_H-elongata_contig13126.2258.1 ID=mRNA_H-elongata_contig13126.2258.1|Name=mRNA_H-elongata_contig13126.2258.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1572bp|location=Sequence derived from alignment at H-elongata_contig13126:4064..4936- (Himanthalia elongata Himel1 dioecious)
TGTCTCAGAGCGGCTCAACATGTACCGGTTCAGTACCTTGTCGGGGAGTG
GGACTTCCACCAGCTCTCGCTTGAGATGAAACCGCCTACGCTTATACCTC
GCCCTGAGATGGAAGAACTGGTGGAAGTTATTCTCCGGTGGGTTCGTCGG
GAGCTGACAGCCGCTGATGGAGGTGATACTCTTGGCAGGGGCACTGCCGA
GGGTGGCGACGGCGGTGGTGACGAGCTACGTTTCCTTGACGTAGGGTCGG
GGACAGGGGCGATCGGACTCGCACTTCTCAAGGAGCTCCCTGGCGCTACT
TGCGTGGCGATCGACGTCCAAGAGCCCGCCGTTGCGCTATCCCGTCGAAA
CGCTGAGCGTAATGGGTTGAACGGCCGGTACTCTTGCTTGCACTCTGTCT
CAGAGCGGCTCAACATGTACCGGTTCAGTACCTTGTCGGGGAGTGGGACT
TCCACCAGCTCTCGCTTGAGATGAAACCGCCTACGCTTATACCTCGCCCT
GAGATGGAAGAACTGGTGGAAGTTATTCTCCGGTGGGTTCGTCGGGAGCT
GACAGCCGCTGATGGAGGTGATACTCTTGGCAGGGGCACTGCCGAGGGTG
GCGACGGCGGTGGTGACGAGCTACGTTTCCTTGACGTAGGGTCGGGGACA
GGGGCGATCGGACTCGCACTTCTCAAGGAGCTCCCTGGCGCTACTTGCGT
GGCGATCGACGTCCAAGAGCCCGCCGTTGCGCTATCCCGTCGAAACGCTG
AGCGTAATGGGTTGAACGGCCGGTACTCTTGCTTGCACTCCGGAGGTCTA
CCAGGCGTAAATGAAGAGAATTTCGAAGGTACTTTTGACTTCATCGTCAG
CAACCCGCCCTACATTCCTAAAAAAGATATGGCAGAACTACCGCCCGATG
TCGCTCACCACGAGGATAGCATTGCACTTGACGGAGGCGAAGATGGACTG
GACGTAGTGCGTGAAATCATTCGAAGGTGTCCGCGATTGCTCAAGAAAGG
CGGCCCGCGGCAGTTATGGATGGAGGTTGACACGTCCCACCCCGAGGCCA
TTCAGCGATGGTTGGGTTTGAGGGTGGGACAACACGGGGTGCAGGAGAGC
CACGTAAACGGAGTGACGATGCTCGAGTGGTTAAGCGACATGTCACAGCG
CCCACGGTTCGTAATACTTACATTTGCCGAGCGGAGGTCTACCAGGCGTA
AATGAAGAGAATTTCGAAGGTACTTTTGACTTCATCGTCAGCAACCCGCC
CTACATTCCTAAAAAAGATATGGCAGAACTACCGCCCGATGTCGCTCACC
ACGAGGATAGCATTGCACTTGACGGAGGCGAAGATGGACTGGACGTAGTG
CGTGAAATCATTCGAAGGTGTCCGCGATTGCTCAAGAAAGGCGGCCCGCG
GCAGTTATGGATGGAGGTTGACACGTCCCACCCCGAGGCCATTCAGCGAT
GGTTGGGTTTGAGGGTGGGACAACACGGGGTGCAGGAGAGCCACGTAAAC
GGAGTGACGATGCTCGAGTGGTTAAGCGACATGTCACAGCGCCCACGGTT
CGTAATACTTACATTTGCCGAG
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