mRNA_H-elongata_contig130892.2235.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130892.2235.1
Unique NamemRNA_H-elongata_contig130892.2235.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130892.2235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130892contigH-elongata_contig130892:782..1473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size692
Cds size483
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.5751185-CDS-H-elongata_contig130892:781..12641622929777.5751185-CDS-H-elongata_contig130892:781..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130892 782..1264 +
1691679153.9421155-CDS-H-elongata_contig130892:781..12641691679153.9421155-CDS-H-elongata_contig130892:781..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130892 782..1264 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.5865035-UTR-H-elongata_contig130892:1264..14731622929777.5865035-UTR-H-elongata_contig130892:1264..1473Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130892 1265..1473 +
1691679153.9523327-UTR-H-elongata_contig130892:1264..14731691679153.9523327-UTR-H-elongata_contig130892:1264..1473Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130892 1265..1473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130892.2235.1prot_H-elongata_contig130892.2235.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130892 782..1264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130892.2235.1

>prot_H-elongata_contig130892.2235.1 ID=prot_H-elongata_contig130892.2235.1|Name=mRNA_H-elongata_contig130892.2235.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp
HSKRSLLFFVAAFLPAAPLIFISFSCTSLWFLNVWLERLVVLPAVWTIPW
HSGQRAERPFLCRSQPPCLYTKAVSLGFSAYSDGSGKCSFCSSFCSSCDG
WDSGTTAAGAGVAEGASSYTPRGAALLPLPSLGANSKDRRLMLLRDQAWC
AEGLWSGPYV*
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mRNA from alignment at H-elongata_contig130892:782..1473+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130892.2235.1 ID=mRNA_H-elongata_contig130892.2235.1|Name=mRNA_H-elongata_contig130892.2235.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=692bp|location=Sequence derived from alignment at H-elongata_contig130892:782..1473+ (Himanthalia elongata Himel1 dioecious)
CACTCAAAGAGGAGCTTGTTGTTCTTCGTGGCCGCCTTCTTGCCGGCTGC
GCCCTTGATCTTCATCAGCTTCTCGTGCACGTCCTTGTGGTTCCTAAACG
TGTGGTTGGAGAGGTTGGTGGTGTTACCCGCGGTTTGGACGATCCCGTGG
CACTCCGGACAGAGAGCTGAACGCCCATTTCTGTGCCGGAGCCAGCCGCC
GTGCTTGTACACCAAAGCTGTCAGCTTGGGGTTCTCCGCGTACTCCGACG
GGTCTGGAAAATGCTCCTTCTGTTCCTCCTTCTGCTCCTCTTGTGACGGC
TGGGATTCAGGAACAACGGCTGCTGGAGCGGGTGTTGCAGAAGGCGCATC
ATCATACACACCGAGAGGAGCGGCGCTGCTGCCGCTACCCTCGCTGGGGG
CAAATTCAAAAGACCGCAGGCTCATGTTGCTGCGGGACCAGGCGTGGTGC
GCAGAAGGGTTGTGGTCTGGCCCGTATGTGTGAGAGTGAGAGGGTGTGGT
GTGCCGGGGGCCCCTTCCGTTTGTTTTCGGAGGAGGGTCGGTGGGTCGGT
ATTTTGGAGGTCCCGTGCCTCAGACGATCGGAATCGGCGGTCGATTTAGA
TCTTCGATCTTCGATCTCGATCCAGAATCGGAAGATCGGGCAAAATATTT
TCGATTCCGATCTTAGAGAATCGCCGATGAATCGAAGATCAG
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Coding sequence (CDS) from alignment at H-elongata_contig130892:782..1473+

>mRNA_H-elongata_contig130892.2235.1 ID=mRNA_H-elongata_contig130892.2235.1|Name=mRNA_H-elongata_contig130892.2235.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig130892:782..1473+ (Himanthalia elongata Himel1 dioecious)
CACTCAAAGAGGAGCTTGTTGTTCTTCGTGGCCGCCTTCTTGCCGGCTGC
GCCCTTGATCTTCATCAGCTTCTCGTGCACGTCCTTGTGGTTCCTAAACG
TGTGGTTGGAGAGGTTGGTGGTGTTACCCGCGGTTTGGACGATCCCGTGG
CACTCCGGACAGAGAGCTGAACGCCCATTTCTGTGCCGGAGCCAGCCGCC
GTGCTTGTACACCAAAGCTGTCAGCTTGGGGTTCTCCGCGTACTCCGACG
GGTCTGGAAAATGCTCCTTCTGTTCCTCCTTCTGCTCCTCTTGTGACGGC
TGGGATTCAGGAACAACGGCTGCTGGAGCGGGTGTTGCAGAAGGCGCATC
ATCATACACACCGAGAGGAGCGGCGCTGCTGCCGCTACCCTCGCTGGGGG
CAAATTCAAAAGACCGCAGGCTCATGTTGCTGCGGGACCAGGCGTGGTGC
GCAGAAGGGTTGTGGTCTGGCCCGTATGTGTGACACTCAAAGAGGAGCTT
GTTGTTCTTCGTGGCCGCCTTCTTGCCGGCTGCGCCCTTGATCTTCATCA
GCTTCTCGTGCACGTCCTTGTGGTTCCTAAACGTGTGGTTGGAGAGGTTG
GTGGTGTTACCCGCGGTTTGGACGATCCCGTGGCACTCCGGACAGAGAGC
TGAACGCCCATTTCTGTGCCGGAGCCAGCCGCCGTGCTTGTACACCAAAG
CTGTCAGCTTGGGGTTCTCCGCGTACTCCGACGGGTCTGGAAAATGCTCC
TTCTGTTCCTCCTTCTGCTCCTCTTGTGACGGCTGGGATTCAGGAACAAC
GGCTGCTGGAGCGGGTGTTGCAGAAGGCGCATCATCATACACACCGAGAG
GAGCGGCGCTGCTGCCGCTACCCTCGCTGGGGGCAAATTCAAAAGACCGC
AGGCTCATGTTGCTGCGGGACCAGGCGTGGTGCGCAGAAGGGTTGTGGTC
TGGCCCGTATGTGTGA
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