mRNA_H-elongata_contig13065.2221.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13065.2221.1
Unique NamemRNA_H-elongata_contig13065.2221.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13065.2221.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 1.440e-67
Identity = 126/295 (42.71%), Postives = 174/295 (58.98%), Query Frame = 1
Query:    1 SDGGTHFTGKVMQMVSSRLGVVHHFGVANVSCSHGTVERMNREVVKTFGAVLSERRRPPSEWPLLLGA-----------RMGTKPFQMMTGRPPATAMSVLAGGDGDGWTVEELDVSGEQMQAWVAGWVREQEDLRCDVVKRVREQRERVRELRGRGHLPVFEVGDYVLVARVRKPGRVSKLAQTWTGPWRVVPGGSEHVRVVENIVTGETQEVHVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFEMADVISVGKDPARVVK-YRVQIAWVGLENEEPTWEPMSTIYADAPKYI 849
            SD  THF   VM  +   LGV   F VAN   S+GT ERM REVV+T  AVL ERRR   +W  L+ A           R  + P+ +M GR P T+ S LA   G+ W ++ LD +  +++  V   ++ Q  L   + ++V   R R R    RG LP F VGDYV+VARVR+ G   KL+ TWTGPWRVV    +HV  V+NIV G+ ++VHV R+R YADS L V ++++ VF+ +  QGE EM  ++++G  PA     Y V++ W G E +E TW+P+S IY DAP+++
Sbjct:  111 SDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREVVRTMKAVLQERRRNLRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDAT--KLKQQVQNVIQTQAVLHKQIQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFL 401          
BLAST of mRNA_H-elongata_contig13065.2221.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 2.660e-63
Identity = 126/295 (42.71%), Postives = 174/295 (58.98%), Query Frame = 1
Query:    1 SDGGTHFTGKVMQMVSSRLGVVHHFGVANVSCSHGTVERMNREVVKTFGAVLSERRRPPSEWPLLLGA-----------RMGTKPFQMMTGRPPATAMSVLAGGDGDGWTVEELDVSGEQMQAWVAGWVREQEDLRCDVVKRVREQRERVRELRGRGHLPVFEVGDYVLVARVRKPGRVSKLAQTWTGPWRVVPGGSEHVRVVENIVTGETQEVHVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFEMADVISVGKDPARVVK-YRVQIAWVGLENEEPTWEPMSTIYADAPKYI 849
            SD  THF   VM  +   LGV   F VAN   S+GT ERM RE+V+T  AVL ERRR   +W  L+ A           R  + P+ +M GR P T+ S LA   G+ W ++ LD +  +++  V   ++ Q  L   V ++V   R R R    RG LP F VGDYV+VARVR+ G   KL+ TWTGPWRVV    +HV  V+NIV G+ ++VHV R+R YADS L V ++++ VF+ +  QGE EM  ++++G  PA     Y V++ W G E +E TW+P+S IY DAP+++
Sbjct: 1334 SDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDAT--KLKQQVQNVIQTQAVLHKQVQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFL 1624          
BLAST of mRNA_H-elongata_contig13065.2221.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 9.030e-42
Identity = 109/296 (36.82%), Postives = 159/296 (53.72%), Query Frame = 1
Query:    1 SDGGTHFTGKVMQMVSSRLGVVHHFGVANVSCSHGTVERMNREVVKTFGAVLSERRRPPSEWPLLLGA-----------RMGTKPFQMMTGRPPATAMSVLAGGDGDGWTVEELDVSGEQMQAWVAGWVREQEDLRCDVVKRVREQRERVRELRGRGHLPVFEVGDYVLVARVRKPGRVSKLAQTWTGPWRVVPGGSEHVRVVENIVTGETQEVHVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFEMADVI--SVGKDPARVVKYRVQIAWVGLENEEPTWEPMSTIYADAPKYI 849
            SD  +HF   +M  + + LGV  +F VAN   S+GT ERM REVV+T  A++ E R    +W  L+ A           R G+ P+ +M GR P TA+S LA   G  W V+ LD    +++  V   V  Q  L  +V+ +V+  R + R     G LP F VGDYV+VA  R                        HV  V+NIV+GE ++VHV R+R YAD++L + AE+++VF+    QGEFEMA ++  SV +D      + V++ WVG + EE TWE +S ++  AP+++
Sbjct: 1436 SDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDWVDLVPAVQWALNTAFRERYGSTPYHVMFGRAPRTALSTLASSTGAEWKVDVLDEKSLRLK--VQHVVEAQRHLHKEVLDKVQASRSKHRASARVGSLPDFVVGDYVIVAAERL-----------------------HVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPG---FDVEVEWVGFDKEENTWEELSKMWDAAPQFV 1703          
BLAST of mRNA_H-elongata_contig13065.2221.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 3.790e-40
Identity = 70/140 (50.00%), Postives = 97/140 (69.29%), Query Frame = 1
Query:  433 RGHLPVFEVGDYVLVARVRKPGRVSKLAQTWTGPWRVVPGGSEHVRVVENIVTGETQEVHVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFEMADVISVGKDPARVVK-YRVQIAWVGLENEEPTWEPMSTIYADAPKYI 849
            RG LP F VGDYV+VARVR+ G   KL+ TWTGPWRVV    +HV  V+NIV G+ ++VHV R+R YADS L V ++++ VF+ +  QGE EM  ++++G  PA     Y V++ W G E +E TW+P+S IY DAP+++
Sbjct:    9 RGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFL 146          
BLAST of mRNA_H-elongata_contig13065.2221.1 vs. uniprot
Match: A0A6G0RPX5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RPX5_9STRA)

HSP 1 Score: 123 bits (308), Expect = 4.890e-29
Identity = 92/296 (31.08%), Postives = 154/296 (52.03%), Query Frame = 1
Query:    1 SDGGTHFTGKVMQMVSSRLGVVHHFGVANVSCSHGTVERMNREVVKTFGAVLSERRRPPSEWPLLLG-----------ARMGTK-PFQMMTGRPPATAMSVLAGGDGDGWTVEELDVSGEQMQAWVAGWVREQEDLRCDVVKRVREQRERVREL-RGRGHLPVFEVGDYVLVARVRKPGRVSKLAQTWTGPWRVVPGGSEHVRVVENIVTGETQEVHVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFEMADVISVGKDPARVVKYRVQIAWVGLENEEPTWEPMSTIYADAPKYI 849
            SD G+HF  +VM  +  RL     F  A     +GTVER+NR++++   A+L E +     W  LL            A +G   P ++  G P  +A+  +A     G  +  +D   E++ A V    R    +R +     +++++R+ E+ R +G +  F VGD+VL +RV    + SKL   W GP+RVV    +H  ++E+++T +  EVH  R++ Y DSSL V AE+++   + K      +  +++   +P    ++ VQ+AW+GLE+ E +WEP+  IYAD P  +
Sbjct:   66 SDNGSHFKAEVMASLCERLKANQSFVPAYTPWINGTVERINRDILQVLRAMLLEFQLDTGNWLYLLPLIQANLNHSPVASLGNHAPIEVFMGLPAPSALDTIAVPSDKGTRLVPVDP--ERVSAHVEKLRRSLHAMRKEAT--TQKEKKRLYEMARAKGGICNFAVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIEHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVSN-EWEVQVAWIGLEDVENSWEPLRRIYADVPTKV 353          
BLAST of mRNA_H-elongata_contig13065.2221.1 vs. uniprot
Match: A0A6A3HSR4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3HSR4_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.780e-27
Identity = 98/300 (32.67%), Postives = 146/300 (48.67%), Query Frame = 1
Query:    1 SDGGTHFTGKVMQMVSSRLGVVHHFGVANVSCSHGTVERMNREVVKTFGAVLSERRRPPSEWPLLLG---ARMGTKPFQMMTGRPPATAMSVLAGGDG--------------DGWTVEELDVSGEQMQAWVAGWVREQEDLRCDVVKRVREQRERVRELRGRGHLPVFEVGDYVLVARVRKPGRV-SKLAQTWTGPWRVVPGGSEHVRVVENIVTGETQEV-HVVRMRPYADSSLVVGAEVRKVFEMTKH-QGEFEMADVISVGKDPARVVKYRVQIAWVGLENEEPTWEPMSTIYADAP 840
            SD G HF  +VM+ +S  LG  HHF  A    ++GTVE +NREV+K+  A+LSERR    +WP +L    A + T P   + G  P TA + L GG                  W  +E       ++A + G  RE  +      KR R  R+R  + RG   LP F  GD+VL A     GR  +KLA  W GP R+V   +++   V++++     E+ H  R++ Y D++        ++ E   H QG   + D+ +    P    ++ VQ+ W GL++ E +WEP  TI +D P
Sbjct:   54 SDQGAHFKNQVMEKLSVALGANHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLGGVTPLTAFTALLGGSQLRGILHPRDPLVSTVTWVEDETIQHLASVRAALDGMHREMTNAS---EKRRRAARDRHAKKRGCVTLPRFSEGDFVLAATAT--GRSGNKLALLWRGPKRIVKAVNDYTFEVQDLMAPFDIELRHASRLQLYRDAAR---GHAEELVEQAIHGQGGHLIEDLKACRLSP-ETHRWEVQVKWFGLDDIEQSWEPAETIRSDVP 344          
BLAST of mRNA_H-elongata_contig13065.2221.1 vs. uniprot
Match: A0A225VKM9_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VKM9_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.950e-27
Identity = 95/298 (31.88%), Postives = 148/298 (49.66%), Query Frame = 1
Query:    1 SDGGTHFTGKVMQMVSSRLGVVHHFGVANVSCSHGTVERMNREVVKTFGAVLSERRRPPSEWPLLLG---ARMGTKPFQMM---------TGRPPATAMSVLAGGDGDGWTVEELDVSGEQMQAWVAGWVREQEDLRCDVVKRVREQRERVR---ELRGRGHLPVFEVGDYVLVARVRKPGRVSKLAQTWTGPWRVVPGGSEHVRVVENIVTGETQEVHVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFEMADVISVGKDPARVVKYRVQIAWVGLENEEPTWEPMSTIYADAPKYI 849
            S  G++F  +VM+ +S RL     F      C +GTVER+NR++++   A+L E +     W  LL    A +   P   +         TG P  +A+  +A     G  +  +D   E++ A V  ++        D+ K    QRE+ R     R +G +  F VGD+VL +RV    + SKL   W GP+RVV    +H  +V++++T +  EVH  R++ Y DSSL V AE++   E    QG      V+ V        ++ VQ+AW+GLE+ E +WEP+ +IY D P  +
Sbjct:  923 SANGSYFKAEVMEQLSKRLKANQSFVPVYTPCINGTVERINRDILQVLRAMLLEFQLDTRNWLYLLPLIQANLNHAPVASLGNXXXXXXFTGLPAPSALDTIAVPSDKGTRLVPVDP--ERVSAHVEKYLH-------DMHKEAATQREKKRLYEMARAKGRICNFVVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIVQHLITKDKVEVHGSRLKFYCDSSLNVTAELK---EHVAKQGI-----VLGVRASITGSTQWEVQVAWIGLEDVENSWEPLRSIYVDVPTKV 1202          
BLAST of mRNA_H-elongata_contig13065.2221.1 vs. uniprot
Match: A0A6A4G1U2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G1U2_9STRA)

HSP 1 Score: 120 bits (301), Expect = 6.300e-27
Identity = 90/296 (30.41%), Postives = 153/296 (51.69%), Query Frame = 1
Query:    1 SDGGTHFTGKVMQMVSSRLGVVHHFGVANVSCSHGTVERMNREVVKTFGAVLSERRRPPSEWPLLLG-----------ARMGTK-PFQMMTGRPPATAMSVLAGGDGDGWTVEELDVSGEQMQAWVAGWVREQEDLRCDVVKRVREQRERVREL-RGRGHLPVFEVGDYVLVARVRKPGRVSKLAQTWTGPWRVVPGGSEHVRVVENIVTGETQEVHVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFEMADVISVGKDPARVVKYRVQIAWVGLENEEPTWEPMSTIYADAPKYI 849
            SD G+HF  +VM  +  RL     F        +GTVER+NR++++   A+L E +     W  LL            A +G   P ++ TG P  +A+  +A     G  +  +D   E++ A V    R    +  +     +++++R+ E+ R +G +  F VGD+VL +RV    + SKL   W GP+RVV    +H  ++++++T +  EVH  R++ Y DSSL V AE+++   + K      +  +++   +P    ++ VQ+AW+GLE+ E +WEP+  IYAD P  +
Sbjct:  689 SDNGSHFKAEVMASLCERLKANQSFVPVYTPWINGTVERINRDILQVLRAMLLEFQLDTRNWLYLLPLIQANLNHSPVASLGNHAPIEVFTGLPAPSALDTIAVPSDKGTRLVPVDP--ERVSAHVEKLRRSLHAMHKEAT--TQKEKKRLYEMARAKGGICNFAVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVSN-EWEVQVAWIGLEDVENSWEPLRRIYADVPTKV 976          
BLAST of mRNA_H-elongata_contig13065.2221.1 vs. uniprot
Match: A0A6A3KPV3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KPV3_9STRA)

HSP 1 Score: 120 bits (301), Expect = 6.800e-27
Identity = 90/296 (30.41%), Postives = 153/296 (51.69%), Query Frame = 1
Query:    1 SDGGTHFTGKVMQMVSSRLGVVHHFGVANVSCSHGTVERMNREVVKTFGAVLSERRRPPSEWPLLLG-----------ARMGTK-PFQMMTGRPPATAMSVLAGGDGDGWTVEELDVSGEQMQAWVAGWVREQEDLRCDVVKRVREQRERVREL-RGRGHLPVFEVGDYVLVARVRKPGRVSKLAQTWTGPWRVVPGGSEHVRVVENIVTGETQEVHVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFEMADVISVGKDPARVVKYRVQIAWVGLENEEPTWEPMSTIYADAPKYI 849
            SD G+HF  +VM  +  RL     F        +GTVER+NR++++   A+L E +     W  LL            A +G   P ++ TG P  +A+  +A     G  +  +D   E++ A V    R    +  +     +++++R+ E+ R +G +  F VGD+VL +RV    + SKL   W GP+RVV    +H  ++++++T +  EVH  R++ Y DSSL V AE+++   + K      +  +++   +P    ++ VQ+AW+GLE+ E +WEP+  IYAD P  +
Sbjct: 1105 SDNGSHFKAEVMASLCERLKANQSFVPVYTPWINGTVERINRDILQVLRAMLLEFQLDTRNWLYLLPLIQANLNHSPVASLGNHAPIEVFTGLPAPSALDTIAVPSDKGTRLVPVDP--ERVSAHVEKLRRSLHAMHKEAT--TQKEKKRLYEMARAKGGICNFAVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVSN-EWEVQVAWIGLEDVENSWEPLRRIYADVPTKV 1392          
BLAST of mRNA_H-elongata_contig13065.2221.1 vs. uniprot
Match: A0A2P4XSG7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XSG7_9STRA)

HSP 1 Score: 119 bits (297), Expect = 7.010e-27
Identity = 86/283 (30.39%), Postives = 137/283 (48.41%), Query Frame = 1
Query:    1 SDGGTHFTGKVMQMVSSRLGVVHHFGVANVSCSHGTVERMNREVVKTFGAVLSERRRPPSEWPLLLGAR---MGTKPFQMMTGRPPATAMSVLAGGDGDGWTVEELDVSGEQMQAWVAGWVREQEDLRCDVVKRVREQRERVRELRGRGHLPVFEVGDYVLVARVRKPGRVSKLAQTWTGPWRVVPGGSEHVRVVENIVTGETQEVHVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFEMADVISVGKDPARVVKYRVQIAWVGLENEEPTWEPMSTIYADAP 840
            SD GTHF  KV++ +   LG  HHF  A    ++GTVE +NREV++   A+LSE R    EWP ++      +   P   + G  P TAM+ L   +      + L V                + ++   +  +  QR +    +    +  F+VGD+VL A V +  R +KL   W GP +V    S  +  +EN++TGE +EVH  R++ YADSSL V  ++ +      H  E  + D +   +  A+  ++ +++ W GL   E +WEP + +  D P
Sbjct:  191 SDQGTHFKNKVIEGLQHALGAHHHFTTARCPWANGTVEVVNREVLRCCRALLSEWRLQSGEWPRVIKIVQMVLNHSPCSAIDGVAPVTAMTGLKAMN----PTDPLAVP---------------DPIQVATLDEI--QRRKHHNGKKGTTMAQFDVGDFVLYADVWQHAR-AKLRVKWCGPAQVTAATSNWIFEIENLITGERREVHASRLKFYADSSLEVTEDLLR---HVAHNSEGHVVDSLLAARYNAQEKRHELKVHWRGLAEAEDSWEPAAVLLQDVP 448          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13065.2221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVS6_9PHAE1.440e-6742.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE2.660e-6342.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE9.030e-4236.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAI3_9PHAE3.790e-4050.00Chromo domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6G0RPX5_9STRA4.890e-2931.08Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]
A0A6A3HSR4_9STRA1.780e-2732.67Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A225VKM9_9STRA1.950e-2731.88RNA-directed DNA polymerase n=1 Tax=Phytophthora m... [more]
A0A6A4G1U2_9STRA6.300e-2730.41Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6A3KPV3_9STRA6.800e-2730.41Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
A0A2P4XSG7_9STRA7.010e-2730.39Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13065contigH-elongata_contig13065:7536..8420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue1e-23
Seed eggNOG ortholog164328.Phyra75602
EggNOG free text desc.Chromo (CHRromatin Organisation MOdifier) domain
EggNOG OGs3QGZ1@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size852
Cds size852
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929776.4053223-CDS-H-elongata_contig13065:7535..81831622929776.4053223-CDS-H-elongata_contig13065:7535..8183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13065 7536..8183 -
1691679153.4881284-CDS-H-elongata_contig13065:7535..81831691679153.4881284-CDS-H-elongata_contig13065:7535..8183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13065 7536..8183 -
1622929776.4199295-CDS-H-elongata_contig13065:8216..84201622929776.4199295-CDS-H-elongata_contig13065:8216..8420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13065 8217..8420 -
1691679153.5026407-CDS-H-elongata_contig13065:8216..84201691679153.5026407-CDS-H-elongata_contig13065:8216..8420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13065 8217..8420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13065.2221.1prot_H-elongata_contig13065.2221.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13065 7536..8420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13065.2221.1

>prot_H-elongata_contig13065.2221.1 ID=prot_H-elongata_contig13065.2221.1|Name=mRNA_H-elongata_contig13065.2221.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=284bp
SDGGTHFTGKVMQMVSSRLGVVHHFGVANVSCSHGTVERMNREVVKTFGA
VLSERRRPPSEWPLLLGARMGTKPFQMMTGRPPATAMSVLAGGDGDGWTV
EELDVSGEQMQAWVAGWVREQEDLRCDVVKRVREQRERVRELRGRGHLPV
FEVGDYVLVARVRKPGRVSKLAQTWTGPWRVVPGGSEHVRVVENIVTGET
QEVHVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFEMADVISVGKDPARV
VKYRVQIAWVGLENEEPTWEPMSTIYADAPKYI*
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mRNA from alignment at H-elongata_contig13065:7536..8420-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13065.2221.1 ID=mRNA_H-elongata_contig13065.2221.1|Name=mRNA_H-elongata_contig13065.2221.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=885bp|location=Sequence derived from alignment at H-elongata_contig13065:7536..8420- (Himanthalia elongata Himel1 dioecious)
AGTGATGGTGGGACGCATTTTACCGGGAAAGTGATGCAGATGGTGTCGTC ACGATTGGGGGTGGTCCACCATTTTGGTGTGGCGAATGTTTCGTGCTCGC ACGGGACGGTGGAACGGATGAACCGTGAAGTCGTGAAGACGTTCGGCGCG GTCCTCAGCGAAAGGCGTCGGCCCCCGAGCGAGTGGCCGTTGTTATTGGG GGCTGTGCAATGAGCTCTCAATTCGGCGTATCGGTAGCGCATGGGGACGA AGCCATTTCAGATGATGACAGGTCGACCTCCTGCGACGGCAATGTCGGTG CTAGCGGGGGGAGACGGTGACGGATGGACTGTAGAAGAGTTAGACGTGTC GGGTGAGCAAATGCAGGCCTGGGTCGCTGGTTGGGTCCGAGAGCAGGAAG ATTTACGGTGTGACGTGGTGAAGCGCGTTCGTGAGCAGCGTGAGCGTGTC CGAGAGCTGCGCGGTCGTGGACATTTGCCAGTGTTTGAGGTTGGAGACTA TGTCTTGGTGGCTCGGGTGCGGAAACCGGGACGTGTGAGTAAGCTCGCAC AGACGTGGACTGGACCGTGGCGTGTTGTGCCTGGAGGATCAGAGCATGTT CGTGTAGTGGAGAACATTGTCACGGGGGAAACCCAGGAAGTGCACGTGGT GCGGATGCGTCCGTATGCTGATTCGTCTCTGGTTGTGGGGGCAGAGGTCC GCAAAGTGTTTGAAATGACCAAGCACCAGGGAGAGTTTGAGATGGCTGAC GTGATCAGTGTTGGCAAGGATCCGGCGCGAGTAGTAAAATACCGGGTGCA GATCGCGTGGGTTGGTCTTGAGAATGAGGAGCCAACGTGGGAACCGATGT CAACTATTTACGCCGACGCTCCCAAGTATATATAG
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Coding sequence (CDS) from alignment at H-elongata_contig13065:7536..8420-

>mRNA_H-elongata_contig13065.2221.1 ID=mRNA_H-elongata_contig13065.2221.1|Name=mRNA_H-elongata_contig13065.2221.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1704bp|location=Sequence derived from alignment at H-elongata_contig13065:7536..8420- (Himanthalia elongata Himel1 dioecious)
AGTGATGGTGGGACGCATTTTACCGGGAAAGTGATGCAGATGGTGTCGTC
ACGATTGGGGGTGGTCCACCATTTTGGTGTGGCGAATGTTTCGTGCTCGC
ACGGGACGGTGGAACGGATGAACCGTGAAGTCGTGAAGACGTTCGGCGCG
GTCCTCAGCGAAAGGCGTCGGCCCCCGAGCGAGTGGCCGTTGTTATTGGG
GGCTAGTGATGGTGGGACGCATTTTACCGGGAAAGTGATGCAGATGGTGT
CGTCACGATTGGGGGTGGTCCACCATTTTGGTGTGGCGAATGTTTCGTGC
TCGCACGGGACGGTGGAACGGATGAACCGTGAAGTCGTGAAGACGTTCGG
CGCGGTCCTCAGCGAAAGGCGTCGGCCCCCGAGCGAGTGGCCGTTGTTAT
TGGGGGCTCGCATGGGGACGAAGCCATTTCAGATGATGACAGGTCGACCT
CCTGCGACGGCAATGTCGGTGCTAGCGGGGGGAGACGGTGACGGATGGAC
TGTAGAAGAGTTAGACGTGTCGGGTGAGCAAATGCAGGCCTGGGTCGCTG
GTTGGGTCCGAGAGCAGGAAGATTTACGGTGTGACGTGGTGAAGCGCGTT
CGTGAGCAGCGTGAGCGTGTCCGAGAGCTGCGCGGTCGTGGACATTTGCC
AGTGTTTGAGGTTGGAGACTATGTCTTGGTGGCTCGGGTGCGGAAACCGG
GACGTGTGAGTAAGCTCGCACAGACGTGGACTGGACCGTGGCGTGTTGTG
CCTGGAGGATCAGAGCATGTTCGTGTAGTGGAGAACATTGTCACGGGGGA
AACCCAGGAAGTGCACGTGGTGCGGATGCGTCCGTATGCTGATTCGTCTC
TGGTTGTGGGGGCAGAGGTCCGCAAAGTGTTTGAAATGACCAAGCACCAG
GGAGAGTTTGAGATGGCTGACGTGATCAGTGTTGGCAAGGATCCGGCGCG
AGTAGTAAAATACCGGGTGCAGATCGCGTGGGTTGGTCTTGAGAATGAGG
AGCCAACGTGGGAACCGATGTCAACTATTTACGCCGACGCTCCCAAGTAT
ATATAGCGCATGGGGACGAAGCCATTTCAGATGATGACAGGTCGACCTCC
TGCGACGGCAATGTCGGTGCTAGCGGGGGGAGACGGTGACGGATGGACTG
TAGAAGAGTTAGACGTGTCGGGTGAGCAAATGCAGGCCTGGGTCGCTGGT
TGGGTCCGAGAGCAGGAAGATTTACGGTGTGACGTGGTGAAGCGCGTTCG
TGAGCAGCGTGAGCGTGTCCGAGAGCTGCGCGGTCGTGGACATTTGCCAG
TGTTTGAGGTTGGAGACTATGTCTTGGTGGCTCGGGTGCGGAAACCGGGA
CGTGTGAGTAAGCTCGCACAGACGTGGACTGGACCGTGGCGTGTTGTGCC
TGGAGGATCAGAGCATGTTCGTGTAGTGGAGAACATTGTCACGGGGGAAA
CCCAGGAAGTGCACGTGGTGCGGATGCGTCCGTATGCTGATTCGTCTCTG
GTTGTGGGGGCAGAGGTCCGCAAAGTGTTTGAAATGACCAAGCACCAGGG
AGAGTTTGAGATGGCTGACGTGATCAGTGTTGGCAAGGATCCGGCGCGAG
TAGTAAAATACCGGGTGCAGATCGCGTGGGTTGGTCTTGAGAATGAGGAG
CCAACGTGGGAACCGATGTCAACTATTTACGCCGACGCTCCCAAGTATAT
ATAG
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