mRNA_H-elongata_contig130304.2204.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130304.2204.1
Unique NamemRNA_H-elongata_contig130304.2204.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 4.920e-66
Identity = 111/202 (54.95%), Postives = 140/202 (69.31%), Query Frame = 1
Query:    4 KSRLEKLELLLQLLVLLDNIDH-ETRSSLVSWERRVWSHYIKPMLADKTFCLRFRMEYEGFMSLVTWLRPALERDQKMGSLRNGAIPVEYQVAMGVWWLAGASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDAVHGAAAGFKNRNTNDVITRAVGALDGLFIRMRRPSIHDHPLPTRFYSGHKKGFGMNFQ 606
            K R+ +L  LL ++VL+D  D  +TR   V  ERR W  Y KPM+ D TF LRFRM+Y  F  L   LRP LER+++MG+LRNG IPVE+Q+AM + +LAG SVF++MD +VI RSTAYAI+ RVI A+N    LDCVWP G+        ++ R+TN VI   VGA+DGLF+RM +PS+  H  P  FYSGHKKGFGMNFQ
Sbjct:   17 KKRMRQLLELLMIMVLMDEGDPPQTRDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGMYRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQ 218          
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 1.010e-60
Identity = 99/177 (55.93%), Postives = 129/177 (72.88%), Query Frame = 1
Query:   76 RSSLVSWERRVWSHYIKPMLADKTFCLRFRMEYEGFMSLVTWLRPALERDQKMGSLRNGAIPVEYQVAMGVWWLAGASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDAVHGAAAGFKNRNTNDVITRAVGALDGLFIRMRRPSIHDHPLPTRFYSGHKKGFGMNFQ 606
            R + V  ERR +  Y++PM+ D TF  RFRM+Y  FM+L   LRP L+RD+KMG+LRNGAIPVE+Q+AM + +LAG SVF++MDS+VI +STAYAI+ RVI A+N   +L+C WP GD     A  ++ R+TN VI R VGA+DGLF+R+  P +  H +P  FYSGHKK FGMNFQ
Sbjct:   46 RGNFVYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGDDAEAQAELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQ 222          
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 3.040e-59
Identity = 103/199 (51.76%), Postives = 132/199 (66.33%), Query Frame = 1
Query:   31 LLQLLVLLDNID------HETRSSLVSWERRVWSHYIKPMLADKTFCLRFRMEYEGFMSLVTWLRPALERDQKMGSLRNGAIPVEYQVAMGVWWLAGASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDAVHGAAAGFKNRNTNDVITRAVGALDGLFIRMRRPSIHDHPLPTRFYSGHKKGFGMNFQV 609
            LL  L +LDN+          RS+LV+ ERR +  YIKPML D TF +RFRMEY+ F  LV  LRPAL++++K G LRNGAIPVEYQVAM + WLAG S+++ MD HVI RSTAY +   VI A+N    L+C WP G+ +    +        DV+ + VGA+DGLF+RM +PS  +   P  +Y+GHKKGFGMNFQV
Sbjct:   25 LLDALAILDNLSALDAPTKRNRSTLVARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDLPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 223          
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 5.950e-48
Identity = 86/179 (48.04%), Postives = 114/179 (63.69%), Query Frame = 1
Query:   52 LDNIDHETRSSLVSWERRVWSHYIKPMLADKTFCLRFRMEYEGFMSLVTWLRPALERDQKMGSLRNGAIPVEYQVAMGVWWLAGASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDAVHGAAAGFKNRNTNDVITRAVGALDGLFIRMRRPSIHDHPLPTRFYSGHKKG 588
            LD      RS+LV+ ERR +  +IKP+L D TF +RFRMEY+ F  L+  LRPAL +++KMG LR GAIPVEYQ+AM + WLAG S+++ MD HVI RSTAY +   VI A+N    L+C WP                  DV+ + VGA+DGLF+RM +PS  +   P  +Y+GH+KG
Sbjct:   38 LDAPTKRNRSTLVARERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARM--------------DVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKG 202          
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 2.560e-44
Identity = 78/140 (55.71%), Postives = 100/140 (71.43%), Query Frame = 1
Query:  190 LVTWLRPALERDQKMGSLRNGAIPVEYQVAMGVWWLAGASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDAVHGAAAGFKNRNTNDVITRAVGALDGLFIRMRRPSIHDHPLPTRFYSGHKKGFGMNFQV 609
            LV  LRPAL+++Q+MG LRNGAIPVE QVAM + WLAG S+++ MD HVI RSTAY +   VI A+N    L+C WP G+    AA  F+NR++ DV+ + VGA DGLF+RM +PS  +   P  +Y+GHKKGFGMNFQ 
Sbjct:   73 LVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQA 212          
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.990e-41
Identity = 70/126 (55.56%), Postives = 89/126 (70.63%), Query Frame = 1
Query:  232 MGSLRNGAIPVEYQVAMGVWWLAGASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDAVHGAAAGFKNRNTNDVITRAVGALDGLFIRMRRPSIHDHPLPTRFYSGHKKGFGMNFQV 609
            MG LRNGAIPVE QVAM + WLAG S+++ MD HVI RSTAY +   VI A+N    L+C WP G+    AA  F+NR++ DV+ + VGA+D LF+RM +PS  +   P  +Y+GHKKGFGMNFQV
Sbjct:    1 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 126          
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.840e-31
Identity = 67/115 (58.26%), Postives = 82/115 (71.30%), Query Frame = 1
Query:   31 LLQLLVLLDNIDH------ETRSSLVSWERRVWSHYIKPMLADKTFCLRFRMEYEGFMSLVTWLRPALERDQKMGSLRNGAIPVEYQVAMGVWWLAGASVFKIMDSHVITRSTAY 357
            LL  L +LDN+         +RS+LV+  RR +  YIKPML D TF +RFRMEY+ F  LV  LRPAL++++KMG LRNGAIPVEYQVAM + WLAG S ++ MD HVI RSTAY
Sbjct:   25 LLDALAILDNLSALDPPSMRSRSTLVARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAY 139          
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.440e-27
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  301 GASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDAVHGAAAGFKNRNTNDVITRAVGALDGLFIRMRRPSIHDHPLPTRFYSGHKKGFGMNFQV 609
            G S+F++MD  V  +STAYAI+ RVI A+N     DCVWP GD        ++ R+TN+VI   VGA+DGLF+ +  PS+  H  P  FYSGHKKGFGMNFQ 
Sbjct:   51 GGSIFEVMDGCVFAKSTAYAIVYRVIDAINQTREFDCVWPEGDDALDQCGVYRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQA 153          
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.970e-22
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query:  232 MGSLRNGAIPVEYQVAMGVWWLAGASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDAVHGAAAGFKNRNT 471
            MG LRNGAIPVEYQVAM + WLAG S+++ MD HVI RSTAY +   VI A+N    L+C WP G+   GAA  F+NR++
Sbjct:    1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAAGAAELFRNRSS 80          
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5J5V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5V5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.520e-21
Identity = 57/150 (38.00%), Postives = 80/150 (53.33%), Query Frame = 1
Query:  166 MEYEGFMSLVTWLRPALERDQKMGSLRNGAIPVEYQVAMGVWWLAGASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDA-VHGAAAGFKNRNT--NDVITRAVGALDGLFIRMRRPSIHDHPLPTRFYSGHKKGFGMNFQ 606
            M  + F  L   LR  LE     G   NG I  E+ +A  + WLAG  V    D   +  STA+A +++ + A+N   RL   WP  +  +   A  F  R +  + V+ R VGAL+GL +R ++PSI +HP P RF+SGHK   GMN+Q
Sbjct:    1 MSPKEFKGLYEMLRGRLECHGPEGRGHNGTIAGEWALASTLRWLAGHGVSAAADGPHMATSTAFAKIKKGLDAINDYGRLRIKWPRKERELQAKAQRFAARRSQLDPVLKRCVGALNGLLVRRKKPSITEHPYPHRFFSGHKMTVGMNYQ 150          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5K3F2_9PHAE4.920e-6654.95DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE1.010e-6055.93DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE3.040e-5951.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS8_9PHAE5.950e-4848.04DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE2.560e-4455.71DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KD49_9PHAE2.990e-4155.56Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K540_9PHAE1.840e-3158.26DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KCG0_9PHAE1.440e-2752.43DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5J9B3_9PHAE1.970e-2257.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J5V5_9PHAE3.520e-2138.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130304contigH-elongata_contig130304:146..766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue4.9e-15
Seed eggNOG ortholog72019.SARC_10743T0
EggNOG OGs2D5T8@1,2SZJJ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size621
Cds size621
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929774.549233-CDS-H-elongata_contig130304:145..7661622929774.549233-CDS-H-elongata_contig130304:145..766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130304 146..766 -
1691679152.7590513-CDS-H-elongata_contig130304:145..7661691679152.7590513-CDS-H-elongata_contig130304:145..766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130304 146..766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130304.2204.1prot_H-elongata_contig130304.2204.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130304 146..766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130304.2204.1

>prot_H-elongata_contig130304.2204.1 ID=prot_H-elongata_contig130304.2204.1|Name=mRNA_H-elongata_contig130304.2204.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp
MKSRLEKLELLLQLLVLLDNIDHETRSSLVSWERRVWSHYIKPMLADKTF
CLRFRMEYEGFMSLVTWLRPALERDQKMGSLRNGAIPVEYQVAMGVWWLA
GASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDAVHGAAA
GFKNRNTNDVITRAVGALDGLFIRMRRPSIHDHPLPTRFYSGHKKGFGMN
FQVKYA*
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mRNA from alignment at H-elongata_contig130304:146..766-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130304.2204.1 ID=mRNA_H-elongata_contig130304.2204.1|Name=mRNA_H-elongata_contig130304.2204.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=621bp|location=Sequence derived from alignment at H-elongata_contig130304:146..766- (Himanthalia elongata Himel1 dioecious)
ATGAAAAGCCGGCTAGAGAAGCTGGAGTTGTTGTTGCAACTCCTAGTACT GCTGGATAATATCGACCACGAGACACGAAGTTCTCTCGTATCATGGGAGA GGAGAGTTTGGTCGCATTATATCAAGCCCATGCTCGCCGATAAGACATTT TGCCTACGCTTTCGGATGGAGTACGAAGGTTTTATGTCCTTGGTGACGTG GTTGCGGCCAGCGCTGGAGAGAGATCAGAAAATGGGGAGCTTACGCAATG GAGCGATCCCGGTGGAATACCAGGTTGCAATGGGTGTATGGTGGCTAGCA GGAGCCTCTGTATTTAAGATTATGGACAGCCATGTCATCACCAGGAGCAC GGCGTATGCCATATTGAGGAGGGTTATCACCGCCGTCAACACGCTAACTC GTCTGGATTGCGTTTGGCCCTCGGGTGACGCTGTTCACGGTGCGGCTGCT GGCTTCAAAAACCGCAACACTAATGACGTTATTACTCGAGCGGTCGGAGC TTTGGATGGACTCTTCATCCGAATGCGACGCCCGTCGATACACGATCACC CGCTTCCAACACGCTTCTACTCGGGCCATAAAAAAGGGTTCGGTATGAAC TTTCAGGTGAAATACGCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig130304:146..766-

>mRNA_H-elongata_contig130304.2204.1 ID=mRNA_H-elongata_contig130304.2204.1|Name=mRNA_H-elongata_contig130304.2204.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at H-elongata_contig130304:146..766- (Himanthalia elongata Himel1 dioecious)
ATGAAAAGCCGGCTAGAGAAGCTGGAGTTGTTGTTGCAACTCCTAGTACT
GCTGGATAATATCGACCACGAGACACGAAGTTCTCTCGTATCATGGGAGA
GGAGAGTTTGGTCGCATTATATCAAGCCCATGCTCGCCGATAAGACATTT
TGCCTACGCTTTCGGATGGAGTACGAAGGTTTTATGTCCTTGGTGACGTG
GTTGCGGCCAGCGCTGGAGAGAGATCAGAAAATGGGGAGCTTACGCAATG
GAGCGATCCCGGTGGAATACCAGGTTGCAATGGGTGTATGGTGGCTAGCA
GGAGCCTCTGTATTTAAGATTATGGACAGCCATGTCATCACCAGGAGCAC
GGCGTATGCCATATTGAGGAGGGTTATCACCGCCGTCAACACGCTAACTC
GTCTGGATTGCGTTTGGCCCTCGGGTGACGCTGTTCACGGTGCGGCTGCT
GGCTTCAAAAACCGCAACACTAATGACGTTATTACTCGAGCGGTCGGAGC
TTTGGATGGACTCTTCATCCGAATGCGACGCCCGTCGATACACGATCACC
CGCTTCCAACACGCTTCTACTCGGGCCATAAAAAAGGGTTCGGTATGAAC
TTTCAGGTGAAATACGCCTGAATGAAAAGCCGGCTAGAGAAGCTGGAGTT
GTTGTTGCAACTCCTAGTACTGCTGGATAATATCGACCACGAGACACGAA
GTTCTCTCGTATCATGGGAGAGGAGAGTTTGGTCGCATTATATCAAGCCC
ATGCTCGCCGATAAGACATTTTGCCTACGCTTTCGGATGGAGTACGAAGG
TTTTATGTCCTTGGTGACGTGGTTGCGGCCAGCGCTGGAGAGAGATCAGA
AAATGGGGAGCTTACGCAATGGAGCGATCCCGGTGGAATACCAGGTTGCA
ATGGGTGTATGGTGGCTAGCAGGAGCCTCTGTATTTAAGATTATGGACAG
CCATGTCATCACCAGGAGCACGGCGTATGCCATATTGAGGAGGGTTATCA
CCGCCGTCAACACGCTAACTCGTCTGGATTGCGTTTGGCCCTCGGGTGAC
GCTGTTCACGGTGCGGCTGCTGGCTTCAAAAACCGCAACACTAATGACGT
TATTACTCGAGCGGTCGGAGCTTTGGATGGACTCTTCATCCGAATGCGAC
GCCCGTCGATACACGATCACCCGCTTCCAACACGCTTCTACTCGGGCCAT
AAAAAAGGGTTCGGTATGAACTTTCAGGTGAAATACGCCTGA
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