mRNA_H-elongata_contig13.2187.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13.2187.1
Unique NamemRNA_H-elongata_contig13.2187.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13.2187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13contigH-elongata_contig13:16228..17844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-06_003430.1
Hectar predicted targeting categoryno signal peptide or anchor
Exons4
Model size257
Cds size171
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13.2187.1prot_H-elongata_contig13.2187.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13 16826..17844 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929772.5095677-UTR-H-elongata_contig13:16227..163051622929772.5095677-UTR-H-elongata_contig13:16227..16305Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13 16228..16305 -
1691679151.9714017-UTR-H-elongata_contig13:16227..163051691679151.9714017-UTR-H-elongata_contig13:16227..16305Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13 16228..16305 -
1622929772.5258677-UTR-H-elongata_contig13:16818..168251622929772.5258677-UTR-H-elongata_contig13:16818..16825Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13 16819..16825 -
1691679151.9817615-UTR-H-elongata_contig13:16818..168251691679151.9817615-UTR-H-elongata_contig13:16818..16825Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13 16819..16825 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929772.5375047-CDS-H-elongata_contig13:16825..168831622929772.5375047-CDS-H-elongata_contig13:16825..16883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13 16826..16883 -
1691679151.9932034-CDS-H-elongata_contig13:16825..168831691679151.9932034-CDS-H-elongata_contig13:16825..16883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13 16826..16883 -
1622929772.6340594-CDS-H-elongata_contig13:17345..173871622929772.6340594-CDS-H-elongata_contig13:17345..17387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13 17346..17387 -
1691679152.009266-CDS-H-elongata_contig13:17345..173871691679152.009266-CDS-H-elongata_contig13:17345..17387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13 17346..17387 -
1622929772.6460547-CDS-H-elongata_contig13:17773..178441622929772.6460547-CDS-H-elongata_contig13:17773..17844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13 17774..17844 -
1691679152.0191076-CDS-H-elongata_contig13:17773..178441691679152.0191076-CDS-H-elongata_contig13:17773..17844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13 17774..17844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13.2187.1

>prot_H-elongata_contig13.2187.1 ID=prot_H-elongata_contig13.2187.1|Name=mRNA_H-elongata_contig13.2187.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
YLDNNNLTTLPAGIFLNLTSLLTLDLSGNENLECVPTNSASTLLLPDNYD
DDYSTC*
back to top

mRNA from alignment at H-elongata_contig13:16228..17844-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13.2187.1 ID=mRNA_H-elongata_contig13.2187.1|Name=mRNA_H-elongata_contig13.2187.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1617bp|location=Sequence derived from alignment at H-elongata_contig13:16228..17844- (Himanthalia elongata Himel1 dioecious)
TATCTCGACAATAACAATTTGACGACGCTTCCTGCGGGCATTTTCTTGAA
CTTGACTTCACTTCTTACCCTGTGAGTGCAAAAGGGGCTCCGAAGAAAGC
TTATGGGCGTAGTGAAGTTGTACACCATGTACTGAGGGGGCTGGGGTCTC
GTATCCACCAACCCGCTATGTTACGATTGTTGTTTTTAGCCATCAGAAGG
CCAGGGGTAAAAACTGTTAGTCACCGTCCACCGTCGGGGTCAGCCCTGGG
ACCCCGCTCAAGCGCTTTCATCAAGAGGATCAACACCCTATCCCTCCATC
CTCCTCGAAATAATGGTATCCCATCGTCCGATAAAACCGCCCACAACATT
GCCTGCTAGATTGACTCAGACCACAATCCACCCCGCCCATCCGAACTTCG
ACCCCCGTTCATTCCGCATTTCCCATCTGTTAAACGTGATGTACAAATTC
AATTCAGGGATCTGAGCGGCAACGAGAATCTCGAATGTGTTCCAACAAAG
TGAGTTCAGGGAAGATATCCGTAGTGTGGAGGTGTCGCCAACAGGGCCAG
ATTACGTTAAGTTACGCGTGCAATTATAAGGCGTTGACGCTACACAAGCA
TCTAAGAGACGAAATGCAATCGGAGGTACAGAGGACAACACACCTTCGGA
GGCAGGAGTCCCTACTCGATTCTCCCGGTGATAACGCGCGCACCTTTAGC
GGAACCTCTGCCATAGCCCCCCTTGACATTTCTCTTACGGTGGGAAACAT
CAATCCATTGCTAGGCAGCGAATATTATATGCATTTGGATCCCAATTTCT
GGTGGATCGTGATGACCCTTAAAACAACTTGGCTTTCAGCGCCTTTGTTA
TATGTATCGTCGAGAGGGTAAAGGGTATATTTTCTGTATATTTTCTGTAT
ATATATCCCTATGCTCTAACCTTCACTTTGTCAAAACCTTATGGTCGCCG
CCCCGCCTCAGCTCTGCTTCAACGCTCCTGCTTCCGGATAACTACGACGA
TGACTACTCCACCTGCTAAGAAATAGGCGAGAAAAATAGGTAACGTGCAG
TTTGACTCGGTGCACGCTCGATGTTTAATACGCGGGGGGAGAGAGGAAAC
GACACGTCAATTTTTCAGGGCAGTCCTGAACAAACGATGATGAAGAAGTA
AGTACATCCTCTTGCCCTGGAATAATAGCGGCTGCTGAGTTGTGCCCGGA
GAAGGCCACTCTAACGGCGAAAGTGGTTTTGATCTACGTCCCTTTTATTC
AAAACGTCGTAGCTTCCGTGATGGGTTTGCTGTTCCATGAATCGCAGTAA
TCACTTTCAGACATCGCTTTCTCGACGGTTGTATACCAACACTTGAACTG
TAGCAATTATTCTCTGCAACAACTATATTTCTGGCGTGCAGTTGGGCAAA
ACCTACTGCTACTTGGCAGCGTACAAGGATAATACACGGGGTAAAGCGTC
ACCCACTAATGTTTCTCTCATCACCATGCGCAGTAACCCTCAGACACTTC
CATGGATGCCCCTGCTCCTCCCTCTACCGTCATTTGCAGCACTGGTATCA
TGATGTATGTTAAAAGGGTAGAAGGTGCAGCTAGCCTGACAGTCATACAT
TGGCGGTGATGCTCAAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig13:16228..17844-

>mRNA_H-elongata_contig13.2187.1 ID=mRNA_H-elongata_contig13.2187.1|Name=mRNA_H-elongata_contig13.2187.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig13:16228..17844- (Himanthalia elongata Himel1 dioecious)
TATCTCGACAATAACAATTTGACGACGCTTCCTGCGGGCATTTTCTTGAA
CTTGACTTCACTTCTTACCCTTATCTCGACAATAACAATTTGACGACGCT
TCCTGCGGGCATTTTCTTGAACTTGACTTCACTTCTTACCCTGGATCTGA
GCGGCAACGAGAATCTCGAATGTGTTCCAACAAAGGATCTGAGCGGCAAC
GAGAATCTCGAATGTGTTCCAACAAACTCTGCTTCAACGCTCCTGCTTCC
GGATAACTACGACGATGACTACTCCACCTGCTAACTCTGCTTCAACGCTC
CTGCTTCCGGATAACTACGACGATGACTACTCCACCTGCTAA
back to top