mRNA_H-elongata_contig12884.2123.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12884.2123.1 vs. uniprot
Match: D7FJY6_ECTSI (Hydrocephalus-inducing protein, Hydin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJY6_ECTSI) HSP 1 Score: 254 bits (650), Expect = 1.680e-75 Identity = 132/171 (77.19%), Postives = 146/171 (85.38%), Query Frame = 1
Query: 1 VLRLRNNDSVNRRLKLLPMDSLNFTVSGPRSPHKLRALKQTK-----------VAPGMEVCYVVTFKPQEVRAYSAELFVVTEREKFVVPVEAVGHRAVLDFPDKVVMPHTAVKAAGTKNILVRNLGTRAASVSLSCQPAGTFSIEPPQVVVPMGESAQLELGFNPKQSVR 480
VL RNNDSVNRRLKLLP+DS +F+VSGPRSPHKL+ALKQTK VAPGMEVCYVVTFKPQEVRAYS EL VVTEREKFVVPV A+GHRAVLDFPD++ MPHTAVKA GTKNI+VRNLGTR AS SLSC+PAGTFSI P QVVVP+G S+QLEL FNP++S+R
Sbjct: 145 VLCFRNNDSVNRRLKLLPLDSPHFSVSGPRSPHKLKALKQTKRLTETLYVRMKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQIAMPHTAVKATGTKNIVVRNLGTRTASASLSCEPAGTFSINPAQVVVPVGTSSQLELAFNPERSIR 315
BLAST of mRNA_H-elongata_contig12884.2123.1 vs. uniprot
Match: A0A6H5K5Z3_9PHAE (MSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Z3_9PHAE) HSP 1 Score: 158 bits (400), Expect = 7.340e-42 Identity = 80/94 (85.11%), Postives = 86/94 (91.49%), Query Frame = 1
Query: 1 VLRLRNNDSVNRRLKLLPMDSLNFTVSGPRSPHKLRALKQTKVAPGMEVCYVVTFKPQEVRAYSAELFVVTEREKFVVPVEAVGHRAVLDFPDK 282
VL RNNDSVNRRLKLLP+DS +F+VSGPRSP KL+ALKQTKVAPGMEVCYVVTFKPQEVRAYS EL VVTEREKFVVPV A+GHRA LDFPD+
Sbjct: 89 VLCFRNNDSVNRRLKLLPLDSPHFSVSGPRSPQKLKALKQTKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAALDFPDQ 182
BLAST of mRNA_H-elongata_contig12884.2123.1 vs. uniprot
Match: A0A835YJI6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJI6_9STRA) HSP 1 Score: 154 bits (389), Expect = 2.100e-40 Identity = 80/153 (52.29%), Postives = 105/153 (68.63%), Query Frame = 1
Query: 1 VLRLRNNDSVNRRLKLLPMDSLNFTVSGPRSPHKLRALKQTKVAPGMEVCYVVTFKPQEVRAYSAELFVVTEREKFVVPVEAVGHRAVLDFPDKVVMPHTAVKAAGTKNILVRNLGTRAASVSLSCQPAGTFSIEPPQVVVPMGESAQLELGF 459
VL LRNNDSVNRR+K+L ++S FTVSGPR P L L Q+K+APGMEVC+VVTF+PQE+ Y+AEL V TEREKF+VPV A G A LD PD++ VKA +K ++ RN+G A+ + FS+ P ++V+P GES +E+ F
Sbjct: 127 VLYLRNNDSVNRRVKVLAVESPYFTVSGPRRPGTLTQLSQSKIAPGMEVCFVVTFRPQEIEPYAAELVVATEREKFIVPVRATGRSAALDLPDRIAFSAQPVKATRSKTLICRNVGACEAAAEAA------FSVYPSELVLPAGESTTVEVSF 273
BLAST of mRNA_H-elongata_contig12884.2123.1 vs. uniprot
Match: F0Y448_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y448_AURAN) HSP 1 Score: 136 bits (342), Expect = 4.660e-34 Identity = 75/156 (48.08%), Postives = 97/156 (62.18%), Query Frame = 1
Query: 4 LRLRNNDSVNRRLKLLPMDSLNFTVSGPRSPHKLRALKQTKVAPGMEVCYVVTFKPQEVRAYSAELFVVTEREKFVVPVEAVGHRAVLDFPDKVVMPHTAVKAAGTKNILVRNLGTRAASVSLSCQPAGTFSIEPPQVVVPMGESAQLELGFNPKQ 471
LR RNND V RR+K+L S F VSGP + K LKQ+KVA GMEVC+VV F+PQEVR Y +L TEREKF+VPV A G RA L P++V AVK+ +++LV+N+G A LSC F P + + +G+ A LEL F P++
Sbjct: 65 LRFRNNDHVARRIKVLQPKSPYFEVSGPHARGKDVTLKQSKVATGMEVCFVVKFRPQEVREYKVDLVCCTEREKFIVPVRAFGLRAALSLPEEVDFGTAAVKSTKQRSLLVQNIGACTAVFKLSCDTPEIFQASPSESITQVGQMATLELSFTPQK 220
BLAST of mRNA_H-elongata_contig12884.2123.1 vs. uniprot
Match: UPI0014257BDE (hydrocephalus-inducing protein homolog isoform X1 n=2 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014257BDE) HSP 1 Score: 120 bits (302), Expect = 1.120e-28 Identity = 71/152 (46.71%), Postives = 95/152 (62.50%), Query Frame = 1
Query: 10 LRNNDSVNRRLKLLPMDSLNFTVSGPRSPHKLRALKQTKVAPGMEVCYVVTFKPQEVRAYSAELFVVTEREKFVVPVEAVGHRAVLDFPDKVVMPHTAVKAAGTKNILVRNLGTRAASVSLSCQPAGTFSIEPPQVVVPMGESAQLELGFNP 465
LRNND V R +K++ DS F V SPH + KVAPG+ + V F P+E + Y EL +TEREKF+VPV+A+G RA+LDFPD V P + VK TK +LVRN+G R A SL+ + F + P + ++P+GES Q+EL F P
Sbjct: 120 LRNNDKVPRLVKVVQADSPYFKVI---SPHDV----SHKVAPGIPTIFKVQFIPEEKKDYMHELVCITEREKFIVPVKAIGARAILDFPDDVTFPTSPVKFPSTKMLLVRNIGNREAKFSLNTE--RPFFVNPEKGILPVGESMQIELTFKP 262
BLAST of mRNA_H-elongata_contig12884.2123.1 vs. uniprot
Match: A0A813ZMT4_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813ZMT4_9BILA) HSP 1 Score: 117 bits (293), Expect = 1.400e-28 Identity = 65/155 (41.94%), Postives = 96/155 (61.94%), Query Frame = 1
Query: 4 LRLRNNDSVNRRLKLLPMDSLNFTV-SGPRSPHKLRALKQTKVAPGMEVCYVVTFKPQEVRAYSAELFVVTEREKFVVPVEAVGHRAVLDFPDKVVMPHTAVKAAGTKNILVRNLGTRAASVSLSCQPAGTFSIEPPQVVVPMGESAQLELGFNP 465
L LRNND V R +K+ +D+ F + + P + HK VAPG+ + Y + F P+E R Y+ E+ + TEREKF++P+ A+G RA+LDFPD+V P TAVK+ +K + VRN+GTR A L Q + + P ++P+GES Q+ + F P
Sbjct: 114 LLLRNNDKVARAVKVTQVDTPYFKIIAPPNAAHK--------VAPGVAIVYKIQFIPEEQRDYTHEIIIATEREKFLIPIRAIGSRAILDFPDEVTFPTTAVKSTNSKVLFVRNVGTREARFVL--QANKPYYVSPENGILPVGESMQVTVDFKP 258
BLAST of mRNA_H-elongata_contig12884.2123.1 vs. uniprot
Match: A0A7S0N684_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N684_9CHLO) HSP 1 Score: 115 bits (288), Expect = 2.520e-28 Identity = 65/156 (41.67%), Postives = 94/156 (60.26%), Query Frame = 1
Query: 1 VLRLRNNDSVNRRLKLLPMDSLNFTVSGPRSPHKLRALKQT-KVAPGMEVCYVVTFKPQEVRAYSAELFVVTEREKFVVPVEAVGHRAVLDFPDKVVMPHTAVKAAGTKNILVRNLGTRAASVSLSCQPAGTFSIEPPQVVVPMGESAQLELGFNP 465
+L LRNND RR+K+LP++S F+++ + K +++ KVAPGMEV Y +TF P+ +L V TEREK++VP+ A+G R LDFPD+++ HT VK TK+ LV+N+G +A S L P F+I P + +GE Q F P
Sbjct: 95 LLCLRNNDKFGRRVKVLPLNSPYFSIAAAKKKGKSGHEEESGKVAPGMEVQYKITFSPKTTDDCGVDLIVATEREKYIVPIRAIGVRGALDFPDEIIFEHTIVKDTTTKSFLVQNVGQKATSFQLFASPP--FAITPTFGNLEIGEMLQCTASFTP 248
BLAST of mRNA_H-elongata_contig12884.2123.1 vs. uniprot
Match: A0A507EKP6_9FUNG (MSP domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A507EKP6_9FUNG) HSP 1 Score: 119 bits (298), Expect = 3.850e-28 Identity = 66/158 (41.77%), Postives = 96/158 (60.76%), Query Frame = 1
Query: 1 VLRLRNNDSVNRRLKLLPMDSLNFTVSGPRSPHKLRALKQTKVAPGMEVCYVVTFKPQEVRAYSAELFVVTEREKFVVPVEAVGHRAVLDFPDKVVMPHTAVKAAGTKNILVRNLGTRAASVSLSCQPAGTFSIEPPQVVVPMGESAQLELGFNPKQS 474
V+ RNND V RRL+L P+DS FT+ G ++ + L K+APGM+V Y++ F P+ Y L VTERE F+VP+EA+G RAVLDFPD++V VK T+ +LVRN+G A + P F + P + + +S Q+++ F+P+QS
Sbjct: 139 VINFRNNDKVPRRLRLEPIDSPYFTIVGSKNDN----LNSGKIAPGMDVAYILRFTPEAETDYKYNLVCVTERETFLVPIEAIGARAVLDFPDELVFTDAPVKFDTTRTLLVRNIGNHPAKFHIKTGPP--FHVSPTNGYLDLKQSMQIDVVFHPEQS 290
BLAST of mRNA_H-elongata_contig12884.2123.1 vs. uniprot
Match: A0A2K3E6E5_CHLRE (Uncharacterized protein n=4 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3E6E5_CHLRE) HSP 1 Score: 118 bits (295), Expect = 9.750e-28 Identity = 74/159 (46.54%), Postives = 94/159 (59.12%), Query Frame = 1
Query: 4 LRLRNNDSVNRRLKLLPMDSLNFTVSGPRSPHKLRALKQTKVAPGMEVCYVVTFKPQEVRAYSAELFVVTEREKFVVPVEAVGHRAVLDFPDKVVMPHTAVKAAGTKNILVRNLGTRAASVSLSCQPAGTFSIEPPQVVVPMGESAQLELGFNPKQSVR 480
L LRNND+V+RR+K+LPMDS F+V P + KVA GMEV + VTFKP+ YS +L V TEREKFVVPV AVG A LDFPD V A K + + VRN+G++AA SLS P F++ P + GE+ Q + F P + R
Sbjct: 109 LYLRNNDNVSRRVKVLPMDSPYFSVRRAAPP--AAGKEDNKVATGMEVAFTVTFKPESRDDYSCDLVVCTEREKFVVPVLAVGASAALDFPDLVDFGSVATKVETKQTLFVRNVGSKAAHFSLSAPPP--FTVTPTAGHLSPGETLQCSVVFEPPSTGR 263
BLAST of mRNA_H-elongata_contig12884.2123.1 vs. uniprot
Match: A0A821QYT5_9BILA (Hypothetical protein (Fragment) n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821QYT5_9BILA) HSP 1 Score: 117 bits (293), Expect = 1.760e-27 Identity = 65/155 (41.94%), Postives = 95/155 (61.29%), Query Frame = 1
Query: 4 LRLRNNDSVNRRLKLLPMDSLNFTVSGPRSPHKLRALKQTKVAPGMEVCYVVTFKPQEVRAYSAELFVVTEREKFVVPVEAVGHRAVLDFPDKVVMPHTAVKAAGTKNIL-VRNLGTRAASVSLSCQPAGTFSIEPPQVVVPMGESAQLELGFNP 465
L LRNND V R +K+ +D+ FT+ P + ++ KVAPG+ + + + FKP+E R Y+ E+ V TEREKF++P+ A+G RA+LDFPD + P TAVK+ +L VRN+G R A L F + P ++P+GES Q+ + FNP
Sbjct: 118 LLLRNNDKVARVVKVSQVDTPYFTIVAPSNAYQ-------KVAPGVALVFRIQFKPEEQRDYAHEILVATEREKFLIPIRAIGARAILDFPDSITFPTTAVKSTNMSKVLFVRNIGNREARFVLQINKP--FHVSPENGLLPVGESMQVTIDFNP 263 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12884.2123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12884.2123.1 >prot_H-elongata_contig12884.2123.1 ID=prot_H-elongata_contig12884.2123.1|Name=mRNA_H-elongata_contig12884.2123.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp VLRLRNNDSVNRRLKLLPMDSLNFTVSGPRSPHKLRALKQTKVAPGMEVCback to top mRNA from alignment at H-elongata_contig12884:3621..5261- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12884.2123.1 ID=mRNA_H-elongata_contig12884.2123.1|Name=mRNA_H-elongata_contig12884.2123.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1641bp|location=Sequence derived from alignment at H-elongata_contig12884:3621..5261- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12884:3621..5261- >mRNA_H-elongata_contig12884.2123.1 ID=mRNA_H-elongata_contig12884.2123.1|Name=mRNA_H-elongata_contig12884.2123.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig12884:3621..5261- (Himanthalia elongata Himel1 dioecious)back to top |