mRNA_H-elongata_contig128504.2098.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128504.2098.1
Unique NamemRNA_H-elongata_contig128504.2098.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: D7FPR6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPR6_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.440e-42
Identity = 71/89 (79.78%), Postives = 78/89 (87.64%), Query Frame = 1
Query:    1 VFICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPEEVNIDRELRWLRSVDPSKADRAAVKALA 267
            VFICVEGDDIGKLLDVRNK TCPCFTNFA KSSEELK LLE A   QKE LI HWGK++ EE NIDREL+WL+SVDP+KAD+AAV+ALA
Sbjct:  162 VFICVEGDDIGKLLDVRNKETCPCFTNFANKSSEELKGLLETALTTQKEALIAHWGKNVAEEANIDRELKWLKSVDPAKADKAAVRALA 250          
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: A0A7R9WKG9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WKG9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.960e-22
Identity = 46/93 (49.46%), Postives = 62/93 (66.67%), Query Frame = 1
Query:    1 VFICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPEEVNIDRELRWLRSVDPSKADRAAVKALAQAKI 279
            V++C  GDD+GK+LD R+ +TCPCF+NFAKK+SEEL  +L  A   QKE LI   G+    E  +D+  RW R +D +KADR A + L  AK+
Sbjct:  133 VYVCTSGDDVGKILDHRDPATCPCFSNFAKKTSEELVEMLVTAIANQKEQLIDAEGEGTATERELDQLERWARKLDTAKADREAGRVLKAAKM 225          
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: A0A7S4JR08_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JR08_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.960e-20
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = 1
Query:    1 VFICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPEEVNIDRELRWLRSVDPSKADRAAVKALAQAKI 279
            V++C  GDD+GK++D R+ STCP F NFAKK SEEL  +L  A  KQKE LI   G+D   E ++D    W R ++ +KAD+ A K L  AKI
Sbjct:  204 VYVCTSGDDVGKIIDHRDPSTCPSFANFAKKGSEELVEMLMEAITKQKEQLIAAEGEDTDTEGDLDELELWARRLNTTKADKQAEKVLKAAKI 296          
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: A0A448ZDW2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDW2_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.380e-17
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 VFICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPEEVNIDRELRWLRSVDPSKADRAAVKALAQAKIN 282
            VFIC +G+++G + D R+K   PCF NFA+KSSEELK LL  A  +QK  L+   G     E  +D  L+W + V+  KAD  A K L   K++
Sbjct:  173 VFICTQGEEVGTIKDFRDKENTPCFNNFARKSSEELKELLVEAINEQKRQLVQAEGTGTATEKELDTMLKWAKKVNAKKADTEAAKILKANKLS 266          
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: B7GAB3_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GAB3_PHATC)

HSP 1 Score: 81.6 bits (200), Expect = 1.340e-16
Identity = 37/94 (39.36%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    1 VFICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPEEVNIDRELRWLRSVDPSKADRAAVKALAQAKIN 282
            V++C EGD +G++ D+R+K+TCP F  F +K +EEL++LL  A  +Q+  L+   G   P E  ID+ ++W + V+ +KAD+ AVK L  + ++
Sbjct:  182 VYVCTEGDKVGQIRDLRDKTTCPSFQIFVRKDAEELRQLLLKALEEQRAQLVAKEGSGTPTEKEIDQLVKWAKKVNTTKADKDAVKVLKASGLS 275          
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: A0A7S1ZF89_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZF89_TRICV)

HSP 1 Score: 79.0 bits (193), Expect = 2.110e-15
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 VFICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPEEVNIDRELRWLRSVDPSKADRAAVKALAQAKI 279
            V++C +G ++GK++D R+K TCP FTN+AK+SSE+L  +L  A   Q+E LI   G     E ++D+   W + ++ +K DR A K L  AK+
Sbjct:  222 VYVCTKGSEVGKIVDYRDKETCPSFTNYAKRSSEDLVEMLCQAINTQREQLIKAEGSGTETERDLDKLQSWAQGLNTAKLDRDADKVLRAAKL 314          
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: K0SGW2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGW2_THAOC)

HSP 1 Score: 71.6 bits (174), Expect = 9.660e-13
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 1
Query:    1 VFICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPEEVNIDRELRWLRSVDPSKADRAAVKALAQAKI 279
            ++IC +G ++G+ +D+R+KS  P F NFA+KSSEEL+R+L  A   Q+  L+   G     EV + R   W + +   KAD+ A K L   ++
Sbjct:  211 MYICTQGSEVGQFMDLRDKSNAPSFNNFARKSSEELRRMLLTAIENQRTALVGAEGGGSGVEVELKRLESWAKKLKCDKADKEATKVLKAQRL 303          
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: A0A6U4BZW5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4BZW5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.530e-9
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1
Query:    1 VFICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPE-EVNIDRELRWLRSVDPSKADRAAVK 258
            V+ICVEGD IG ++D R+ S+CP   NF +  +E LK  L  A   QKE L    G         +D ++RW   V+P+ AD+ A +
Sbjct:  216 VWICVEGDGIGAIVDRRDMSSCPNAANFCRLPAELLKTKLLAALAAQKEALTAREGDGATALAAKLDSDMRWASKVNPTTADKEAAR 302          
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: A0A425C4L8_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A425C4L8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.440e-8
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    4 FICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPEEVNIDRELRWLRSVDPSKADRAAVKAL 264
            +I V+GDD+G ++D R  +  P F +F   SSE+L++LL +A+ KQ E+LI H G D P    + +       ++  KADR+  K L
Sbjct:  166 YIRVKGDDLGSIIDTRLSAGKPSFLHFFAMSSEDLQKLLLLAYDKQMEVLIEHEGSDTPLLKELQKARASAARINTEKADRSIQKVL 252          
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: A0A0P1AE59_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AE59_PLAHL)

HSP 1 Score: 58.2 bits (139), Expect = 6.780e-8
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    4 FICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPEEVNIDRELRWLRSVDPSKADRAA 252
            FI V+GDD+G ++D R+    P F +F    S+EL +LL +A+ KQ E+L+ H G D+P    + +       ++  KADR+A
Sbjct:  174 FIRVKGDDLGSIIDTRSSIGKPSFLHFFAMPSDELLKLLLLAYDKQMEVLVEHEGPDIPLVKELQKARASAARINVDKADRSA 256          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FPR6_ECTSI1.440e-4279.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9WKG9_9STRA3.960e-2249.46Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S4JR08_9STRA2.960e-2049.46Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A448ZDW2_9STRA4.380e-1743.62Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B7GAB3_PHATC1.340e-1639.36Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A7S1ZF89_TRICV2.110e-1540.86Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
K0SGW2_THAOC9.660e-1337.63Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A6U4BZW5_9STRA4.530e-939.08Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A425C4L8_9STRA1.440e-837.93Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A0P1AE59_PLAHL6.780e-837.35Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128504contigH-elongata_contig128504:1..1333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.7
Seed ortholog evalue1.4e-33
Seed eggNOG ortholog2880.D7FPR6
EggNOG OGs2A9UG@1,2RYJF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size288
Cds size288
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128504.2098.1prot_H-elongata_contig128504.2098.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128504 1..1333 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929763.2639325-CDS-H-elongata_contig128504:0..181622929763.2639325-CDS-H-elongata_contig128504:0..18Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128504 1..18 +
1691679148.513778-CDS-H-elongata_contig128504:0..181691679148.513778-CDS-H-elongata_contig128504:0..18Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128504 1..18 +
1622929763.2784574-CDS-H-elongata_contig128504:289..3641622929763.2784574-CDS-H-elongata_contig128504:289..364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128504 290..364 +
1691679148.5227754-CDS-H-elongata_contig128504:289..3641691679148.5227754-CDS-H-elongata_contig128504:289..364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128504 290..364 +
1622929763.2881-CDS-H-elongata_contig128504:669..7761622929763.2881-CDS-H-elongata_contig128504:669..776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128504 670..776 +
1691679148.5300515-CDS-H-elongata_contig128504:669..7761691679148.5300515-CDS-H-elongata_contig128504:669..776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128504 670..776 +
1622929763.2976527-CDS-H-elongata_contig128504:1245..13331622929763.2976527-CDS-H-elongata_contig128504:1245..1333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128504 1246..1333 +
1691679148.5377078-CDS-H-elongata_contig128504:1245..13331691679148.5377078-CDS-H-elongata_contig128504:1245..1333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128504 1246..1333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128504.2098.1

>prot_H-elongata_contig128504.2098.1 ID=prot_H-elongata_contig128504.2098.1|Name=mRNA_H-elongata_contig128504.2098.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
VFICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEM
LITHWGKDLPEEVNIDRELRWLRSVDPSKADRAAVKALAQAKINN*
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mRNA from alignment at H-elongata_contig128504:1..1333+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128504.2098.1 ID=mRNA_H-elongata_contig128504.2098.1|Name=mRNA_H-elongata_contig128504.2098.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1333bp|location=Sequence derived from alignment at H-elongata_contig128504:1..1333+ (Himanthalia elongata Himel1 dioecious)
GTTTTCATATGTGTGGAGGTACAATGCATGACGTGACTGCTTTATGCGGA CGCGCCCGAGTGTCGAATTATATCACATTCGCGCGTGTCTGCAAATACAT AATGACCGCGCATAAGTTTCGCGACAACGATAATGTGCACATTATTTTCT TTGCACATGTACAGTCCGATTTATTTTAGCTCTTTACTACCACCCGCGCC GAGACGCGAGCGACGTTGGTGCGCGTTTGTATGTTGCCGGCGACAACGTG TTCTCTTCCCCGTCTACGCATTCAATAATGGATTCGCAGGGCGACGATAT CGGCAAACTCCTTGACGTCCGCAACAAATCCACCTGTCCGTGCTTCACGA ACTTCGCCAAGAAGGTTGGTCGAACGTACGGTAGTTAGTCCCTCTGGACA TGGTGCAGTCACTCGGGAGCAAGCGCTCAAGTGTTCTGGGAAGGTGCCAG ATATCTCAGTCATCCCTCGACGTTGACCATAATTTTGGACTGTATGATAA TTTGATGAAAATGCTTATCGGTTTGCATCCGCTTGCAGTGGTCTATTTTT AGCCTTCATTTTTTTACCCAAACGATCCCAATCAATGGCGAAGGCGAATA TCGCATCTGTTCTAAAACAGTACAGAGTTGACTGACTCCTTGTCTTGTCA TGTGCTTCTTCTGTATCAGAGTTCGGAGGAGCTAAAAAGATTACTCGAGG TGGCATTCCTAAAGCAAAAGGAAATGCTGATTACTCACTGGGGAAAAGAC CTCCCGGAAGAAGTGAATATCGACAGGTGACTCGCGCGTGCAGAGCTTCC CGCATCTTTACCCCGTCACGAGCTACTCGAGTGTCGAGTGTCGCAGGAGA AACGAAAACACTCTGCGGCACACTCTAAAGAAGAGTTAGGCTTTTTTGAG ATAAAACACACGTTGCGTCTGCGACCTGGTTCCAGCCGAGCGCTTGCCCT CTTGTCGTGTATCATTCGACTGAAGATGAAGATGATCTATGGCAACTTTC GTGGTGTGTTTTTATATATGGAGGTGTCTCTCAAGTGCATCCCTAGCGCA GAGGTTATGATAGGTTGCGGCATCATCGCACTCTGACACAAACGCACGCA CACAATTTTGCCCCATTCTCGCTCTGCTCTAAGTCGACGCCATAGAGTTG GAACTGGCTGACTTACTCCTGATCATGACGGTGCTTTGAGAACTACCACC ACTAACTCTATAATGCAATGTTTTGATGCTGCACGCGCTGGTCAGGGAGC TTCGATGGTTGCGTAGCGTGGATCCGTCAAAGGCAGACAGGGCCGCCGTG AAAGCCCTTGCGCAAGCAAAGATAAATAACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig128504:1..1333+

>mRNA_H-elongata_contig128504.2098.1 ID=mRNA_H-elongata_contig128504.2098.1|Name=mRNA_H-elongata_contig128504.2098.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig128504:1..1333+ (Himanthalia elongata Himel1 dioecious)
GTTTTCATATGTGTGGAGGTTTTCATATGTGTGGAGGGCGACGATATCGG
CAAACTCCTTGACGTCCGCAACAAATCCACCTGTCCGTGCTTCACGAACT
TCGCCAAGAAGGGCGACGATATCGGCAAACTCCTTGACGTCCGCAACAAA
TCCACCTGTCCGTGCTTCACGAACTTCGCCAAGAAGAGTTCGGAGGAGCT
AAAAAGATTACTCGAGGTGGCATTCCTAAAGCAAAAGGAAATGCTGATTA
CTCACTGGGGAAAAGACCTCCCGGAAGAAGTGAATATCGACAGAGTTCGG
AGGAGCTAAAAAGATTACTCGAGGTGGCATTCCTAAAGCAAAAGGAAATG
CTGATTACTCACTGGGGAAAAGACCTCCCGGAAGAAGTGAATATCGACAG
GGAGCTTCGATGGTTGCGTAGCGTGGATCCGTCAAAGGCAGACAGGGCCG
CCGTGAAAGCCCTTGCGCAAGCAAAGATAAATAACTAAGGAGCTTCGATG
GTTGCGTAGCGTGGATCCGTCAAAGGCAGACAGGGCCGCCGTGAAAGCCC
TTGCGCAAGCAAAGATAAATAACTAA
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