mRNA_H-elongata_contig127960.2061.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127960.2061.1
Unique NamemRNA_H-elongata_contig127960.2061.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig127960.2061.1 vs. uniprot
Match: D7G0R8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R8_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 3.010e-10
Identity = 45/124 (36.29%), Postives = 52/124 (41.94%), Query Frame = -1 
Query:   22 RPGDVVMRVPPGLWLPYCAEAAVAKVSRKGTRPT*DLILVRYCFFFLLHSKVFALALAGIVVITPYAAAPIFAERRCPLSQAEGAAPEFLARLSKVCEAIGGGPW--VAPFSCLALEMLFALER 387
            R G+ ++RVPP +WLPYCAEAAV K                                                        AE  AP+FLARLS  C  IGGG    VAP +CLALE+LF LER
Sbjct:   66 RAGEELLRVPPAVWLPYCAEAAVRK--------------------------------------------------------AEAGAPDFLARLSNTCAKIGGGDASKVAPVACLALELLFTLER 133
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BLAST of mRNA_H-elongata_contig127960.2061.1 vs. uniprot
Match: A0A6H5J5T1_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5T1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 5.620e-10
Identity = 45/124 (36.29%), Postives = 52/124 (41.94%), Query Frame = -1 
Query:   22 RPGDVVMRVPPGLWLPYCAEAAVAKVSRKGTRPT*DLILVRYCFFFLLHSKVFALALAGIVVITPYAAAPIFAERRCPLSQAEGAAPEFLARLSKVCEAIGGGPW--VAPFSCLALEMLFALER 387
            R G+ ++RVPP +WLPYCAEAAV K                                                        AE  AP+FLARLS  C  IGGG    VAP +CLALE+LF LER
Sbjct:   80 RVGEELLRVPPAVWLPYCAEAAVRK--------------------------------------------------------AEAGAPDFLARLSNTCAKIGGGDALEVAPVACLALELLFTLER 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127960.2061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0R8_ECTSI3.010e-1036.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J5T1_9PHAE5.620e-1036.29SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127960contigH-elongata_contig127960:343..1135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size417
Cds size417
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929759.3752286-CDS-H-elongata_contig127960:342..6031622929759.3752286-CDS-H-elongata_contig127960:342..603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127960 343..603 -
1691679146.9544406-CDS-H-elongata_contig127960:342..6031691679146.9544406-CDS-H-elongata_contig127960:342..603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127960 343..603 -
1622929759.3908439-CDS-H-elongata_contig127960:979..11351622929759.3908439-CDS-H-elongata_contig127960:979..1135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127960 980..1135 -
1691679146.9627528-CDS-H-elongata_contig127960:979..11351691679146.9627528-CDS-H-elongata_contig127960:979..1135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127960 980..1135 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127960.2061.1prot_H-elongata_contig127960.2061.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127960 343..1135 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127960.2061.1

>prot_H-elongata_contig127960.2061.1 ID=prot_H-elongata_contig127960.2061.1|Name=mRNA_H-elongata_contig127960.2061.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MHPHKTSPLQSEQHLQRKARERRHPGTSSYGFADLAQPGQKFGGGPLCLG
KGTPTFSKNRGGCVRRYNNDASEGEGEDFRVKKEEEAVTDQNEVSGRAGA
FTAYFCDRSLGAVWKPQPRRHSHYDIARPVPKEALRWER
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mRNA from alignment at H-elongata_contig127960:343..1135-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127960.2061.1 ID=mRNA_H-elongata_contig127960.2061.1|Name=mRNA_H-elongata_contig127960.2061.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=793bp|location=Sequence derived from alignment at H-elongata_contig127960:343..1135- (Himanthalia elongata Himel1 dioecious)
ATGCATCCACATAAAACTTCACCTCTCCAGAGCGAACAGCATCTCCAACG
CAAGGCAAGAGAAAGGCGCCACCCAGGGACCTCCTCCTATGGCTTCGCAG
ACCTTGCTCAGCCGGGCCAAAAATTCGGGGGCGGCCCCCTCTGCCTGGGA
AAGGGGGTAGGCCGAGATATGAGGGGGGGGGGGGGGGGGGTAGATCGAAT
ACATGTATTCACAAAATAAAATCGCGACCGATCTACTGACCGACCGATGA
ACACACATAATACTCTGCCCTCATCGCAGATCGTAGTTTTTATTTTGTCA
TCTTGGATTTTTATTTTTTGATATATACCAGGTATATATATATATATTTT
TTTTCCCACCAAACTAGAACCGAATTAAAACCTTTCGAAATTTCTACACT
ATTATAGAAACGATTTTACTTTTCGATCGGTGAAAAGTTTGGGGGATAAT
TTACGGGGGCGAATGGTTATATACCTTTGTACTATACAGTACCACTCATA
TCTCTTGTGATACTCACGCTGCGCCCAAACAGACACCTACGTTCAGCAAA
AATCGGGGCGGCTGCGTAAGGCGTTATAACAACGATGCCAGCGAGGGCGA
GGGCGAAGACTTTCGAGTGAAGAAGGAAGAAGAAGCAGTAACGGACCAGA
ATGAGGTCTCAGGTCGGGCGGGTGCCTTTACGGCTTACTTTTGCGACCGC
AGCCTCGGCGCAGTATGGAAGCCACAGCCCCGGCGGCACTCGCATTACGA
CATCGCCCGGCCTGTACCGAAGGAGGCATTACGATGGGAGAGA
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Coding sequence (CDS) from alignment at H-elongata_contig127960:343..1135-

>mRNA_H-elongata_contig127960.2061.1 ID=mRNA_H-elongata_contig127960.2061.1|Name=mRNA_H-elongata_contig127960.2061.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig127960:343..1135- (Himanthalia elongata Himel1 dioecious)
ATGCATCCACATAAAACTTCACCTCTCCAGAGCGAACAGCATCTCCAACG
CAAGGCAAGAGAAAGGCGCCACCCAGGGACCTCCTCCTATGGCTTCGCAG
ACCTTGCTCAGCCGGGCCAAAAATTCGGGGGCGGCCCCCTCTGCCTGGGA
AAGGGGATGCATCCACATAAAACTTCACCTCTCCAGAGCGAACAGCATCT
CCAACGCAAGGCAAGAGAAAGGCGCCACCCAGGGACCTCCTCCTATGGCT
TCGCAGACCTTGCTCAGCCGGGCCAAAAATTCGGGGGCGGCCCCCTCTGC
CTGGGAAAGGGGACACCTACGTTCAGCAAAAATCGGGGCGGCTGCGTAAG
GCGTTATAACAACGATGCCAGCGAGGGCGAGGGCGAAGACTTTCGAGTGA
AGAAGGAAGAAGAAGCAGTAACGGACCAGAATGAGGTCTCAGGTCGGGCG
GGTGCCTTTACGGCTTACTTTTGCGACCGCAGCCTCGGCGCAGTATGGAA
GCCACAGCCCCGGCGGCACTCGCATTACGACATCGCCCGGCCTGTACCGA
AGGAGGCATTACGATGGGAGAGAACACCTACGTTCAGCAAAAATCGGGGC
GGCTGCGTAAGGCGTTATAACAACGATGCCAGCGAGGGCGAGGGCGAAGA
CTTTCGAGTGAAGAAGGAAGAAGAAGCAGTAACGGACCAGAATGAGGTCT
CAGGTCGGGCGGGTGCCTTTACGGCTTACTTTTGCGACCGCAGCCTCGGC
GCAGTATGGAAGCCACAGCCCCGGCGGCACTCGCATTACGACATCGCCCG
GCCTGTACCGAAGGAGGCATTACGATGGGAGAGA
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