mRNA_H-elongata_contig12730.2024.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12730.2024.1
Unique NamemRNA_H-elongata_contig12730.2024.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12730.2024.1 vs. uniprot
Match: A0A6H5KK43_9PHAE (ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK43_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.920e-15
Identity = 35/48 (72.92%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 LFVLLVVYCYASLAPLILPIACMLYGGAYLVYKNQALYVYVQTSDAGG 144
            LFVLL+V+CYA++AP++LP AC+LY G+YLVYKNQALYVYVQT+++GG
Sbjct:  566 LFVLLIVFCYAAIAPIVLPTACLLYLGSYLVYKNQALYVYVQTAESGG 613
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BLAST of mRNA_H-elongata_contig12730.2024.1 vs. uniprot
Match: A0A7R9VC65_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VC65_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.980e-6
Identity = 22/52 (42.31%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 LFVLLVVYCYASLAPLILPIACMLYGGAYLVYKNQALYVYVQTSDAGGEVRP 156
            L V+++V+ YA ++P+ILP+  + + GA +VYK Q LYVY+   ++GG++ P
Sbjct:  544 LLVIMIVFAYACISPIILPVGAVYFFGALMVYKKQVLYVYIPKYESGGKLFP 595
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BLAST of mRNA_H-elongata_contig12730.2024.1 vs. uniprot
Match: A0A7S3MIQ7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MIQ7_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.000e-6
Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    7 VLLVVYCYASLAPLILPIACMLYGGAYLVYKNQALYVYVQTSDAGGEV 150
            VL+++  YA++APLILP+    +  AYL+YK Q LYVY+ +  AGGE+
Sbjct:  804 VLMIMMTYATIAPLILPLCAFYFAMAYLMYKYQLLYVYINSYQAGGEM 851
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BLAST of mRNA_H-elongata_contig12730.2024.1 vs. uniprot
Match: A0A7S0UJ14_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UJ14_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 6.140e-5
Identity = 21/52 (40.38%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    4 FVLLVVYCYASLAPLILPIACMLYGGAYLVYKNQALYVYVQTSDAGGEVRPG 159
            FV+++++ YA + P+ILP   + +G + +VYK Q LYVY    ++GG + PG
Sbjct:  731 FVIMIIFTYAVICPVILPFGALYFGFSLIVYKKQILYVYQPVYESGGAMFPG 782
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BLAST of mRNA_H-elongata_contig12730.2024.1 vs. uniprot
Match: A0A7S4ABB6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ABB6_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 6.150e-5
Identity = 21/52 (40.38%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    4 FVLLVVYCYASLAPLILPIACMLYGGAYLVYKNQALYVYVQTSDAGGEVRPG 159
            FV+++++ YA + P+ILP   + +G + +VYK Q LYVY    ++GG + PG
Sbjct:  867 FVIMIIFTYAVICPMILPFGTLYFGFSLIVYKKQILYVYQPVYESGGAMFPG 918
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BLAST of mRNA_H-elongata_contig12730.2024.1 vs. uniprot
Match: A0A6P5N0P9_ARADU (CSC1-like protein ERD4 isoform X1 n=7 Tax=Arachis TaxID=3817 RepID=A0A6P5N0P9_ARADU)

HSP 1 Score: 47.8 bits (112), Expect = 8.380e-5
Identity = 20/50 (40.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    7 VLLVVYCYASLAPLILPIACMLYGGAYLVYKNQALYVYVQTSDAGGEVRP 156
            ++++V+CY+ +APLI+P   + +G  +L+ +NQAL VYV T ++ G + P
Sbjct:  570 IVIIVFCYSVIAPLIIPFGVLYFGLGWLILRNQALNVYVPTFESNGRMWP 619
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12730.2024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KK43_9PHAE2.920e-1572.92ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7R9VC65_9STRA4.980e-642.31Hypothetical protein n=2 Tax=Pseudictyota dubia Ta... [more]
A0A7S3MIQ7_9STRA5.000e-650.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0UJ14_9STRA6.140e-540.38Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S4ABB6_9STRA6.150e-540.38Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A6P5N0P9_ARADU8.380e-540.00CSC1-like protein ERD4 isoform X1 n=7 Tax=Arachis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12730contigH-elongata_contig12730:8081..8245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue1.9e-11
Seed eggNOG ortholog2880.D7FTY9
KEGG koko:K21989
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal peptide
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929755.2214713-CDS-H-elongata_contig12730:8080..82451622929755.2214713-CDS-H-elongata_contig12730:8080..8245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12730 8081..8245 -
1691679145.360812-CDS-H-elongata_contig12730:8080..82451691679145.360812-CDS-H-elongata_contig12730:8080..8245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12730 8081..8245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12730.2024.1prot_H-elongata_contig12730.2024.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12730 8081..8245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12730.2024.1

>prot_H-elongata_contig12730.2024.1 ID=prot_H-elongata_contig12730.2024.1|Name=mRNA_H-elongata_contig12730.2024.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
LFVLLVVYCYASLAPLILPIACMLYGGAYLVYKNQALYVYVQTSDAGGEV
RPGG*
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mRNA from alignment at H-elongata_contig12730:8081..8245-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12730.2024.1 ID=mRNA_H-elongata_contig12730.2024.1|Name=mRNA_H-elongata_contig12730.2024.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig12730:8081..8245- (Himanthalia elongata Himel1 dioecious)
CTGTTCGTGCTTTTGGTGGTGTACTGCTACGCCTCCCTGGCTCCCCTGAT
CCTACCGATCGCATGCATGCTCTACGGCGGAGCCTACCTGGTGTACAAGA
ATCAGGCCCTCTACGTCTACGTCCAGACATCTGATGCTGGGGGCGAGGTC
CGTCCGGGGGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig12730:8081..8245-

>mRNA_H-elongata_contig12730.2024.1 ID=mRNA_H-elongata_contig12730.2024.1|Name=mRNA_H-elongata_contig12730.2024.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig12730:8081..8245- (Himanthalia elongata Himel1 dioecious)
CTGTTCGTGCTTTTGGTGGTGTACTGCTACGCCTCCCTGGCTCCCCTGAT
CCTACCGATCGCATGCATGCTCTACGGCGGAGCCTACCTGGTGTACAAGA
ATCAGGCCCTCTACGTCTACGTCCAGACATCTGATGCTGGGGGCGAGGTC
CGTCCGGGGGGGTAACTGTTCGTGCTTTTGGTGGTGTACTGCTACGCCTC
CCTGGCTCCCCTGATCCTACCGATCGCATGCATGCTCTACGGCGGAGCCT
ACCTGGTGTACAAGAATCAGGCCCTCTACGTCTACGTCCAGACATCTGAT
GCTGGGGGCGAGGTCCGTCCGGGGGGGTAA
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