mRNA_H-elongata_contig127225.2022.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127225.2022.1
Unique NamemRNA_H-elongata_contig127225.2022.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127225.2022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127225contigH-elongata_contig127225:407..995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size589
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127225.2022.1prot_H-elongata_contig127225.2022.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127225 459..758 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929754.9886534-UTR-H-elongata_contig127225:406..4581622929754.9886534-UTR-H-elongata_contig127225:406..458Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127225 407..458 +
1691679145.2375998-UTR-H-elongata_contig127225:406..4581691679145.2375998-UTR-H-elongata_contig127225:406..458Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127225 407..458 +
1622929755.0203636-UTR-H-elongata_contig127225:758..9951622929755.0203636-UTR-H-elongata_contig127225:758..995Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127225 759..995 +
1691679145.2684886-UTR-H-elongata_contig127225:758..9951691679145.2684886-UTR-H-elongata_contig127225:758..995Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127225 759..995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929755.0038602-CDS-H-elongata_contig127225:458..7581622929755.0038602-CDS-H-elongata_contig127225:458..758Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127225 459..758 +
1691679145.2514358-CDS-H-elongata_contig127225:458..7581691679145.2514358-CDS-H-elongata_contig127225:458..758Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127225 459..758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127225.2022.1

>prot_H-elongata_contig127225.2022.1 ID=prot_H-elongata_contig127225.2022.1|Name=mRNA_H-elongata_contig127225.2022.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MTTQSTISSYHTCVLQRDNRSRLIRSTRYISFHRWSLVSCSQFGRFRWTS
RFYPERSHTTSTHLRSLPLPVVFFSGVFVVLSSSNHLPWQYLPWRRALD*
back to top

mRNA from alignment at H-elongata_contig127225:407..995+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127225.2022.1 ID=mRNA_H-elongata_contig127225.2022.1|Name=mRNA_H-elongata_contig127225.2022.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=589bp|location=Sequence derived from alignment at H-elongata_contig127225:407..995+ (Himanthalia elongata Himel1 dioecious)
GATCCCCTACTTATGCATAGCCACGTACTCTTTACTAATTCCCCCGCATC
TAATGACAACTCAATCGACAATCTCATCATATCACACGTGTGTCCTACAA
AGAGACAACCGATCACGCCTCATCAGGAGCACTCGATACATCAGCTTTCA
CCGCTGGTCTCTCGTTAGTTGCTCTCAATTTGGACGATTTCGTTGGACTT
CTCGGTTTTACCCCGAACGTTCACACACAACTAGTACGCACTTGCGCTCG
TTGCCCTTACCAGTTGTATTTTTCAGCGGGGTTTTCGTCGTCCTAAGCTC
AAGCAACCATCTTCCCTGGCAATACTTGCCGTGGAGACGTGCACTGGACT
GAATCTGCTAATAATCGAGGAGAGGAGAGGAACGGCGTACTTGCGGAGTA
TTCTTCCCGGCTGGAGATCATGTTTTTCATCCTCCTCTTCCTGTTTTTCC
CGTGCGCACTGGTTGGAGCATTCGTGACAACAGACGAGCATGACATCACC
GTCACCGCATTCCAGACAACTAGTCGGGTTTTCTCCGTTGCGCCCCTAGC
TGGTGCTTATGAGGGACTATTTAGTACGGCTGTTAAGGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig127225:407..995+

>mRNA_H-elongata_contig127225.2022.1 ID=mRNA_H-elongata_contig127225.2022.1|Name=mRNA_H-elongata_contig127225.2022.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig127225:407..995+ (Himanthalia elongata Himel1 dioecious)
ATGACAACTCAATCGACAATCTCATCATATCACACGTGTGTCCTACAAAG
AGACAACCGATCACGCCTCATCAGGAGCACTCGATACATCAGCTTTCACC
GCTGGTCTCTCGTTAGTTGCTCTCAATTTGGACGATTTCGTTGGACTTCT
CGGTTTTACCCCGAACGTTCACACACAACTAGTACGCACTTGCGCTCGTT
GCCCTTACCAGTTGTATTTTTCAGCGGGGTTTTCGTCGTCCTAAGCTCAA
GCAACCATCTTCCCTGGCAATACTTGCCGTGGAGACGTGCACTGGACTGA
ATGACAACTCAATCGACAATCTCATCATATCACACGTGTGTCCTACAAAG
AGACAACCGATCACGCCTCATCAGGAGCACTCGATACATCAGCTTTCACC
GCTGGTCTCTCGTTAGTTGCTCTCAATTTGGACGATTTCGTTGGACTTCT
CGGTTTTACCCCGAACGTTCACACACAACTAGTACGCACTTGCGCTCGTT
GCCCTTACCAGTTGTATTTTTCAGCGGGGTTTTCGTCGTCCTAAGCTCAA
GCAACCATCTTCCCTGGCAATACTTGCCGTGGAGACGTGCACTGGACTGA
back to top