mRNA_H-elongata_contig127051.2008.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127051.2008.1
Unique NamemRNA_H-elongata_contig127051.2008.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig127051.2008.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.260e-16
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    4 GCDVIGLQETKRNGHCEITASKYRVYFSGDCSGVKGEKRQHGVGLAIKEEVVNKAGKDDIAIECINERLLHARISI-KSNFVTFVVAYASSE 276
            GCDVIGLQET+R G   I    Y + +SG  +G K ++  HGVG+AIKE +    G++   +ECI+ RL+  R+ I ++  VTFVV YA +E
Sbjct:   42 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 133
[Close]
BLAST of mRNA_H-elongata_contig127051.2008.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.630e-16
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    4 GCDVIGLQETKRNGHCEITASKYRVYFSGDCSGVKGEKRQHGVGLAIKEEVVNKAGKDDIAIECINERLLHARISI-KSNFVTFVVAYASSE 276
            GCDVIGLQET+R G   I    Y + +SG  +G K ++  HGVG+AIKE +    G++   +ECI+ RL+  R+ I ++  VTFVV YA +E
Sbjct:   11 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 102
[Close]
BLAST of mRNA_H-elongata_contig127051.2008.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.760e-16
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    4 GCDVIGLQETKRNGHCEITASKYRVYFSGDCSGVKGEKRQHGVGLAIKEEVVNKAGKDDIAIECINERLLHARISI-KSNFVTFVVAYA 267
            GCDVIGLQET+R G   I    Y V +SG  +G K ++  HGVG+AIKE + + AG++   +ECI+ RL+  R+ I ++  VTFVV YA
Sbjct:  156 GCDVIGLQETRREGQGSIAHDGYVVIWSGARAGTKDKRGVHGVGIAIKEAMWDSAGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYA 244
[Close]
BLAST of mRNA_H-elongata_contig127051.2008.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.050e-16
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:    4 GCDVIGLQETKRNGHCEITASKYRVYFSGDCSGVKGEKRQHGVGLAIKEEVVNKAGKDDIAIECINERLLHARISI-KSNFVTFVVAYASSE 276
            GCDVIGLQET+R G   +    Y + +SG  +G K ++  HGVG+AIKE +    G+    +ECIN RL+  R+ I ++  VTFVV YA +E
Sbjct:   11 GCDVIGLQETRREGQGSLAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQIGRTCGVTFVVGYAPTE 102
[Close]
BLAST of mRNA_H-elongata_contig127051.2008.1 vs. uniprot
Match: A0A6H5KAA3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA3_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.960e-16
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    4 GCDVIGLQETKRNGHCEITASKYRVYFSGDCSGVKGEKRQHGVGLAIKEEVVNKAGKDDIAIECINERLLHARISI-KSNFVTFVVAYASSE 276
            GCDVIGLQET+R G   I    Y + +SG  +G K ++  HGVG+AIKE +    G++   +ECI+ RL+  R+ I ++  VTFVV YA SE
Sbjct:   11 GCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPSE 102
[Close]
BLAST of mRNA_H-elongata_contig127051.2008.1 vs. uniprot
Match: A0A6H5KTK0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 6.120e-16
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    4 GCDVIGLQETKRNGHCEITASKYRVYFSGDCSGVKGEKRQHGVGLAIKEEVVNKAGKDDIAIECINERLLHARISI-KSNFVTFVVAYASSE 276
            GCDVIGLQET+R G   I    Y + +SG  +G K ++  HGVG+AIKE +    G++   +ECI+ RL+  R+ I ++  VTFVV YA +E
Sbjct:   11 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 102
[Close]
BLAST of mRNA_H-elongata_contig127051.2008.1 vs. uniprot
Match: A0A6H5JM04_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM04_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 6.330e-16
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    4 GCDVIGLQETKRNGHCEITASKYRVYFSGDCSGVKGEKRQHGVGLAIKEEVVNKAGKDDIAIECINERLLHARISI-KSNFVTFVVAYASSE 276
            GCDVIGLQET+R G   I    Y + +SG  +G K ++  HGVG+AIKE +    G++   +ECI+ RL+  R+ I ++  VTFVV YA +E
Sbjct:   11 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 102
[Close]
BLAST of mRNA_H-elongata_contig127051.2008.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 6.780e-16
Identity = 48/123 (39.02%), Postives = 73/123 (59.35%), Query Frame = 1 
Query:    4 GCDVIGLQETKRNGHCEITASKYRVYFSGDCSGVKGEKRQHGVGLAIKEEVVNKAGKDDIAIECINERLLHARISI-KSNFVTFVVAYASSE--KATEG----EKAKYIAAFNSTVSSVPARE 351
            GCDVIGLQET+R G   I    Y + +SG  +G K ++  HGVG+AIKE +    G++   +ECI+ RL+  R+ I ++  VTF+V YA +E  + TEG     K  +  A ++ +  V +R+
Sbjct:  208 GCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRD 330
[Close]
BLAST of mRNA_H-elongata_contig127051.2008.1 vs. uniprot
Match: A0A6H5JUC3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC3_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 7.040e-16
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    4 GCDVIGLQETKRNGHCEITASKYRVYFSGDCSGVKGEKRQHGVGLAIKEEVVNKAGKDDIAIECINERLLHARISI-KSNFVTFVVAYASSE 276
            GCDVIGLQET+R G   I    Y + +SG  +G K ++  HGVG+AIKE +    G++   +ECI+ RL+  R+ I ++  VTFVV YA +E
Sbjct:  140 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 231
[Close]
BLAST of mRNA_H-elongata_contig127051.2008.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 7.040e-16
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    4 GCDVIGLQETKRNGHCEITASKYRVYFSGDCSGVKGEKRQHGVGLAIKEEVVNKAGKDDIAIECINERLLHARISI-KSNFVTFVVAYASSE 276
            GCDVIGLQET+R G   I    Y + +SG  +G K ++  HGVG+AIKE +    G++   +ECI+ RL+  R+ I ++  VTFVV YA +E
Sbjct:   92 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 183
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127051.2008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZE6_9PHAE1.260e-1645.65Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KBZ6_9PHAE3.630e-1645.65Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KDU4_9PHAE3.760e-1648.31Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K259_9PHAE4.050e-1645.65Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KAA3_9PHAE4.960e-1646.74Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KTK0_9PHAE6.120e-1645.65Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JM04_9PHAE6.330e-1645.65Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K3Q1_9PHAE6.780e-1639.02Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JUC3_9PHAE7.040e-1645.65Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JGX2_9PHAE7.040e-1645.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127051contigH-elongata_contig127051:272..634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929753.7800539-CDS-H-elongata_contig127051:271..6341622929753.7800539-CDS-H-elongata_contig127051:271..634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127051 272..634 +
1691679144.7144-CDS-H-elongata_contig127051:271..6341691679144.7144-CDS-H-elongata_contig127051:271..634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127051 272..634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127051.2008.1prot_H-elongata_contig127051.2008.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127051 272..634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127051.2008.1

>prot_H-elongata_contig127051.2008.1 ID=prot_H-elongata_contig127051.2008.1|Name=mRNA_H-elongata_contig127051.2008.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
RGCDVIGLQETKRNGHCEITASKYRVYFSGDCSGVKGEKRQHGVGLAIKE
EVVNKAGKDDIAIECINERLLHARISIKSNFVTFVVAYASSEKATEGEKA
KYIAAFNSTVSSVPARECVFI
back to top

mRNA from alignment at H-elongata_contig127051:272..634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127051.2008.1 ID=mRNA_H-elongata_contig127051.2008.1|Name=mRNA_H-elongata_contig127051.2008.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=363bp|location=Sequence derived from alignment at H-elongata_contig127051:272..634+ (Himanthalia elongata Himel1 dioecious)
AGAGGGTGTGATGTTATTGGACTGCAGGAGACAAAACGGAACGGACATTG
TGAAATAACTGCATCTAAATACCGGGTGTATTTCAGTGGTGATTGTAGCG
GAGTCAAAGGAGAAAAGAGGCAACATGGGGTGGGACTAGCAATAAAGGAG
GAGGTCGTAAACAAGGCCGGTAAGGATGACATCGCAATCGAGTGCATCAA
CGAACGTCTCCTGCACGCTCGAATATCGATTAAATCTAATTTTGTTACGT
TTGTAGTAGCCTACGCTTCGTCTGAGAAAGCGACGGAAGGGGAGAAGGCT
AAGTATATCGCAGCCTTCAACAGCACCGTATCATCAGTGCCCGCTCGGGA
ATGCGTCTTCATT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig127051:272..634+

>mRNA_H-elongata_contig127051.2008.1 ID=mRNA_H-elongata_contig127051.2008.1|Name=mRNA_H-elongata_contig127051.2008.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig127051:272..634+ (Himanthalia elongata Himel1 dioecious)
AGAGGGTGTGATGTTATTGGACTGCAGGAGACAAAACGGAACGGACATTG
TGAAATAACTGCATCTAAATACCGGGTGTATTTCAGTGGTGATTGTAGCG
GAGTCAAAGGAGAAAAGAGGCAACATGGGGTGGGACTAGCAATAAAGGAG
GAGGTCGTAAACAAGGCCGGTAAGGATGACATCGCAATCGAGTGCATCAA
CGAACGTCTCCTGCACGCTCGAATATCGATTAAATCTAATTTTGTTACGT
TTGTAGTAGCCTACGCTTCGTCTGAGAAAGCGACGGAAGGGGAGAAGGCT
AAGTATATCGCAGCCTTCAACAGCACCGTATCATCAGTGCCCGCTCGGGA
ATGCGTCTTCATTAGAGGGTGTGATGTTATTGGACTGCAGGAGACAAAAC
GGAACGGACATTGTGAAATAACTGCATCTAAATACCGGGTGTATTTCAGT
GGTGATTGTAGCGGAGTCAAAGGAGAAAAGAGGCAACATGGGGTGGGACT
AGCAATAAAGGAGGAGGTCGTAAACAAGGCCGGTAAGGATGACATCGCAA
TCGAGTGCATCAACGAACGTCTCCTGCACGCTCGAATATCGATTAAATCT
AATTTTGTTACGTTTGTAGTAGCCTACGCTTCGTCTGAGAAAGCGACGGA
AGGGGAGAAGGCTAAGTATATCGCAGCCTTCAACAGCACCGTATCATCAG
TGCCCGCTCGGGAATGCGTCTTCATT
back to top