mRNA_H-elongata_contig126981.2001.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126981.2001.1
Unique NamemRNA_H-elongata_contig126981.2001.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126981.2001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126981contigH-elongata_contig126981:93..469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size377
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126981.2001.1prot_H-elongata_contig126981.2001.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126981 159..461 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929753.3230588-UTR-H-elongata_contig126981:92..1581622929753.3230588-UTR-H-elongata_contig126981:92..158Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126981 93..158 +
1691679144.4571707-UTR-H-elongata_contig126981:92..1581691679144.4571707-UTR-H-elongata_contig126981:92..158Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126981 93..158 +
1622929753.3466365-UTR-H-elongata_contig126981:461..4691622929753.3466365-UTR-H-elongata_contig126981:461..469Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126981 462..469 +
1691679144.4741013-UTR-H-elongata_contig126981:461..4691691679144.4741013-UTR-H-elongata_contig126981:461..469Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126981 462..469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929753.333943-CDS-H-elongata_contig126981:158..4611622929753.333943-CDS-H-elongata_contig126981:158..461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126981 159..461 +
1691679144.4658062-CDS-H-elongata_contig126981:158..4611691679144.4658062-CDS-H-elongata_contig126981:158..461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126981 159..461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126981.2001.1

>prot_H-elongata_contig126981.2001.1 ID=prot_H-elongata_contig126981.2001.1|Name=mRNA_H-elongata_contig126981.2001.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MDQLLYASLFPHPLLLEWTWRLQSLLRVEPYFKLKCEAILILKPYLIPKY
PDAACYAVPPFLLHASRSTPFYLSSAWYLTTLNPMMRWIGGTCYFYFLNI
*
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mRNA from alignment at H-elongata_contig126981:93..469+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126981.2001.1 ID=mRNA_H-elongata_contig126981.2001.1|Name=mRNA_H-elongata_contig126981.2001.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=377bp|location=Sequence derived from alignment at H-elongata_contig126981:93..469+ (Himanthalia elongata Himel1 dioecious)
GCCTGCACTGAGCCAGCAGTCCTCAAGGTAGCTCGAGTAACGAGTGCAGC
CTATTCAGGTAACCCCATGGACCAATTATTGTACGCCTCTCTTTTCCCAC
ACCCACTATTGTTAGAGTGGACATGGCGGTTGCAGAGTTTACTGCGGGTC
GAACCATATTTCAAGTTGAAATGCGAGGCGATACTCATACTCAAGCCCTA
CCTCATCCCAAAATATCCAGATGCTGCCTGCTACGCGGTCCCTCCATTCC
TTCTCCATGCTTCCCGGTCTACACCTTTCTATCTGTCATCCGCTTGGTAT
TTGACCACGCTCAATCCGATGATGCGCTGGATCGGAGGCACGTGTTATTT
CTATTTTTTAAACATATGAATTCAATC
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Coding sequence (CDS) from alignment at H-elongata_contig126981:93..469+

>mRNA_H-elongata_contig126981.2001.1 ID=mRNA_H-elongata_contig126981.2001.1|Name=mRNA_H-elongata_contig126981.2001.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig126981:93..469+ (Himanthalia elongata Himel1 dioecious)
ATGGACCAATTATTGTACGCCTCTCTTTTCCCACACCCACTATTGTTAGA
GTGGACATGGCGGTTGCAGAGTTTACTGCGGGTCGAACCATATTTCAAGT
TGAAATGCGAGGCGATACTCATACTCAAGCCCTACCTCATCCCAAAATAT
CCAGATGCTGCCTGCTACGCGGTCCCTCCATTCCTTCTCCATGCTTCCCG
GTCTACACCTTTCTATCTGTCATCCGCTTGGTATTTGACCACGCTCAATC
CGATGATGCGCTGGATCGGAGGCACGTGTTATTTCTATTTTTTAAACATA
TGAATGGACCAATTATTGTACGCCTCTCTTTTCCCACACCCACTATTGTT
AGAGTGGACATGGCGGTTGCAGAGTTTACTGCGGGTCGAACCATATTTCA
AGTTGAAATGCGAGGCGATACTCATACTCAAGCCCTACCTCATCCCAAAA
TATCCAGATGCTGCCTGCTACGCGGTCCCTCCATTCCTTCTCCATGCTTC
CCGGTCTACACCTTTCTATCTGTCATCCGCTTGGTATTTGACCACGCTCA
ATCCGATGATGCGCTGGATCGGAGGCACGTGTTATTTCTATTTTTTAAAC
ATATGA
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