mRNA_H-elongata_contig126800.1989.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126800.1989.1
Unique NamemRNA_H-elongata_contig126800.1989.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig126800.1989.1 vs. uniprot
Match: D7G6L3_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L3_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.080e-36
Identity = 57/69 (82.61%), Postives = 63/69 (91.30%), Query Frame = 1
Query:    1 MSALYDLFAVSNHIGAMGHGHYTAFVRDWDGGGMSSEWHVCDDHECRRVHESRVCTSHAYVLFYRRRPL 207
            MSALYDLFAVSNH+G MGHGHYTAFVRDW+G GMS +WHVCDDH+CR V E+RV T+HAYVLFYRRRPL
Sbjct:  106 MSALYDLFAVSNHMGGMGHGHYTAFVRDWEGSGMSQDWHVCDDHDCRPVPEARVRTAHAYVLFYRRRPL 174          
BLAST of mRNA_H-elongata_contig126800.1989.1 vs. uniprot
Match: A0A6H5L229_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L229_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.410e-33
Identity = 57/69 (82.61%), Postives = 63/69 (91.30%), Query Frame = 1
Query:    1 MSALYDLFAVSNHIGAMGHGHYTAFVRDWDGGGMSSEWHVCDDHECRRVHESRVCTSHAYVLFYRRRPL 207
            MSALYDLFAVSNH+G MGHGHYTAFVRDW+G GMS +WHVCDDH+CR V E+RV T+HAYVLFYRRRPL
Sbjct: 1624 MSALYDLFAVSNHMGGMGHGHYTAFVRDWEGSGMSQDWHVCDDHDCRPVPEARVRTAHAYVLFYRRRPL 1692          
BLAST of mRNA_H-elongata_contig126800.1989.1 vs. uniprot
Match: A0A7S2A1U5_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A1U5_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.100e-15
Identity = 37/65 (56.92%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    7 ALYDLFAVSNHIGAMGHGHYTAFVRDWDGGGMSSEWHVCDDHECRRVHESRVCTSHAYVLFYRRR 201
            A+YDLFAV+NH G MG GHYTA+ R W+  GMS +W   DD     +  S V T  AYVLFYRRR
Sbjct:  816 AIYDLFAVTNHYGRMGFGHYTAYARKWNEDGMSDQWAAFDDSNVGGIKPSMVVTPAAYVLFYRRR 880          
BLAST of mRNA_H-elongata_contig126800.1989.1 vs. uniprot
Match: A0A7S2S141_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S141_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 9.210e-15
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query:    7 ALYDLFAVSNHIGAMGHGHYTAFVRDWDGGGMSSEWHVCDDHECRRVHES-------RVCTSHAYVLFYRRRPLT 210
            ++YDLFAV+NH G MG GHYTAF R W+  GM S+W   DD   + V +        ++ TS AYVLFYRRR  T
Sbjct:  145 SIYDLFAVTNHYGRMGFGHYTAFARRWNENGMESDWANFDDSNVQSVGDGHGHVNGVKMATSAAYVLFYRRRIFT 219          
BLAST of mRNA_H-elongata_contig126800.1989.1 vs. uniprot
Match: A0A7S0SVR6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SVR6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.820e-14
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    4 SALYDLFAVSNHIGAMGHGHYTAFVRDWDGGGMSSEWHVCDDHECRR-VHESRVCTSHAYVLFYRRR 201
            SA+YDLFAV NH G MG GHYTAF RD+    +SS+W+  DD   +R V+ + V T  AY+L+YRRR
Sbjct:  358 SAVYDLFAVCNHYGRMGFGHYTAFARDYINNSLSSQWYAFDDDSVKRCVNPNEVKTRAAYILYYRRR 424          
BLAST of mRNA_H-elongata_contig126800.1989.1 vs. uniprot
Match: A0A6S8PAR9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8PAR9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.030e-14
Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    7 ALYDLFAVSNHIGAMGHGHYTAFVRDWDGGGMSSEWHVCDDHECRRVHESRVCTSHAYVLFYRRRPLT 210
            A+YDLF V NH G MG GHYTAF R+W+  G  S W + DD     V  + V +  AYVLFYRRRP+T
Sbjct: 1073 AIYDLFGVVNHYGRMGFGHYTAFCREWNELGEMSSWSLFDDSAVSSVVGNNVVSPAAYVLFYRRRPVT 1140          
BLAST of mRNA_H-elongata_contig126800.1989.1 vs. uniprot
Match: A0A7R9ZMG8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZMG8_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.130e-14
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   13 YDLFAVSNHIGAMGHGHYTAFVRDWDGGGMSSEWHVCDDHECRRVHESR--VCTSHAYVLFYRRR 201
            YDLFAV NH+GAMG GHYTA+ R WD  G+S EW + +D     VH  +  + +S AYVLFYRRR
Sbjct:  250 YDLFAVVNHMGAMGGGHYTAYARKWDEVGISDEWRLFNDSSVSPVHNPQRDLVSSKAYVLFYRRR 314          
BLAST of mRNA_H-elongata_contig126800.1989.1 vs. uniprot
Match: A0A2D4CH16_PYTIN (Ubiquitin-specific protease, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CH16_PYTIN)

HSP 1 Score: 70.5 bits (171), Expect = 2.500e-14
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   13 YDLFAVSNHIGAMGHGHYTAFVRDW-DGGGMSSEWHVCDDHECRRVHESRVCTSHAYVLFYRRRPL 207
            YDLFAVSNH G MG GHYTAF R+W D G     W+  DD +   V   +V +S AY+LFY+RR L
Sbjct:   20 YDLFAVSNHYGGMGFGHYTAFARNWNDAGEKYPGWYSFDDSQVSPVMPGQVKSSAAYILFYKRRCL 85          
BLAST of mRNA_H-elongata_contig126800.1989.1 vs. uniprot
Match: A0A448ZDP4_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDP4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.790e-14
Identity = 35/63 (55.56%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   13 YDLFAVSNHIGAMGHGHYTAFVRDWDGGGMSSEWHVCDDHECRRVHESRVCTSHAYVLFYRRR 201
            YDLFAV NH G +G GHYT+F   WD  G+S EW+  DD     V  S V +S AY+LFYRRR
Sbjct: 1164 YDLFAVVNHYGRLGFGHYTSFAMQWDETGISKEWNAFDDSSVHPVEPSEVQSSAAYILFYRRR 1226          
BLAST of mRNA_H-elongata_contig126800.1989.1 vs. uniprot
Match: A0A7S4MEW6_9EUKA (Ubiquitinyl hydrolase 1 n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MEW6_9EUKA)

HSP 1 Score: 72.8 bits (177), Expect = 2.460e-13
Identity = 33/66 (50.00%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   10 LYDLFAVSNHIGAMGHGHYTAFVRDWDGGGMSSEWHVCDDHECRRVHESRVCTSHAYVLFYRRRPL 207
            +YDL AVSNH GA+G GHYTAF ++++     ++W+  DD     V+ES++C+S AYVLFYRR+ +
Sbjct:  934 IYDLMAVSNHFGALGGGHYTAFAKNYN----DNKWYKFDDSNVSPVNESKICSSAAYVLFYRRKDV 995          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126800.1989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6L3_ECTSI1.080e-3682.61USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L229_9PHAE2.410e-3382.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2A1U5_9STRA3.100e-1556.92Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Dity... [more]
A0A7S2S141_9STRA9.210e-1550.67Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S0SVR6_9STRA1.820e-1455.22Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A6S8PAR9_9STRA2.030e-1454.41Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7R9ZMG8_9STRA2.130e-1456.92Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A2D4CH16_PYTIN2.500e-1454.55Ubiquitin-specific protease, putative n=1 Tax=Pyth... [more]
A0A448ZDP4_9STRA3.790e-1455.56Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4MEW6_9EUKA2.460e-1350.00Ubiquitinyl hydrolase 1 n=1 Tax=Vannella sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126800contigH-elongata_contig126800:769..981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue2.3e-28
Seed eggNOG ortholog2880.D7G6L3
KEGG koko:K11835,ko:K11839
KEGG Pathwayko04137,ko04144,ko04934,map04137,map04144,map04934
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5560@1,KOG1870@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929751.212744-CDS-H-elongata_contig126800:768..9811622929751.212744-CDS-H-elongata_contig126800:768..981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126800 769..981 +
1691679143.456728-CDS-H-elongata_contig126800:768..9811691679143.456728-CDS-H-elongata_contig126800:768..981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126800 769..981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126800.1989.1prot_H-elongata_contig126800.1989.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126800 769..981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126800.1989.1

>prot_H-elongata_contig126800.1989.1 ID=prot_H-elongata_contig126800.1989.1|Name=mRNA_H-elongata_contig126800.1989.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MSALYDLFAVSNHIGAMGHGHYTAFVRDWDGGGMSSEWHVCDDHECRRVH
ESRVCTSHAYVLFYRRRPLT*
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mRNA from alignment at H-elongata_contig126800:769..981+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126800.1989.1 ID=mRNA_H-elongata_contig126800.1989.1|Name=mRNA_H-elongata_contig126800.1989.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig126800:769..981+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGCGTTGTACGACCTCTTCGCGGTTTCCAACCACATCGGAGCCAT GGGCCACGGGCACTACACGGCTTTCGTGCGTGACTGGGACGGCGGCGGGA TGTCTTCCGAATGGCATGTGTGCGACGACCACGAGTGCCGCCGAGTACAC GAGTCCCGAGTGTGCACTTCTCATGCGTACGTCCTATTCTATCGGCGGAG ACCACTCACGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig126800:769..981+

>mRNA_H-elongata_contig126800.1989.1 ID=mRNA_H-elongata_contig126800.1989.1|Name=mRNA_H-elongata_contig126800.1989.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig126800:769..981+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGCGTTGTACGACCTCTTCGCGGTTTCCAACCACATCGGAGCCAT
GGGCCACGGGCACTACACGGCTTTCGTGCGTGACTGGGACGGCGGCGGGA
TGTCTTCCGAATGGCATGTGTGCGACGACCACGAGTGCCGCCGAGTACAC
GAGTCCCGAGTGTGCACTTCTCATGCGTACGTCCTATTCTATCGGCGGAG
ACCACTCACGTGAATGTCCGCGTTGTACGACCTCTTCGCGGTTTCCAACC
ACATCGGAGCCATGGGCCACGGGCACTACACGGCTTTCGTGCGTGACTGG
GACGGCGGCGGGATGTCTTCCGAATGGCATGTGTGCGACGACCACGAGTG
CCGCCGAGTACACGAGTCCCGAGTGTGCACTTCTCATGCGTACGTCCTAT
TCTATCGGCGGAGACCACTCACGTGA
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