mRNA_H-elongata_contig126407.1967.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126407.1967.1
Unique NamemRNA_H-elongata_contig126407.1967.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: A0A6H5L0H9_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H9_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 1.120e-58
Identity = 105/121 (86.78%), Postives = 111/121 (91.74%), Query Frame = 1
Query:    1 KVLMLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAATGVGSTSVSTVVTQFVRLGLGGPLVGLFTAMIG 363
            +VL+LAGPGVM ATIMMA FSKYVFP+ WDWNT LFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFF+A+TG+GSTSV  VV QFVRLGLGGP VG FT MIG
Sbjct:  144 QVLVLAGPGVMAATIMMAVFSKYVFPYDWDWNTCLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFDASTGIGSTSVGHVVAQFVRLGLGGPAVGFFTGMIG 264          
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: D7G372_ECTSI (Sodium/hydrogen exchanger family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G372_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 2.650e-58
Identity = 105/121 (86.78%), Postives = 112/121 (92.56%), Query Frame = 1
Query:    1 KVLMLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAATGVGSTSVSTVVTQFVRLGLGGPLVGLFTAMIG 363
            +VL+LAGPGV+ ATIMMA FSKYVFP+ WDWNT LFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFF+A+TG+GSTSV  VVTQFVRLGLGGP VG FT MIG
Sbjct:   77 QVLVLAGPGVLAATIMMAVFSKYVFPYDWDWNTCLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFDASTGIGSTSVGHVVTQFVRLGLGGPAVGFFTGMIG 197          
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: D8LKR2_ECTSI (Sodium/hydrogen exchanger family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR2_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 9.410e-38
Identity = 76/121 (62.81%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    1 KVLMLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAATGVGSTSVSTVVTQFVRLGLGGPLVGLFTAMIG 363
            +V+ LAGPGV +ATI+ A   KYVFP+GWDWN SL  G + SATDPVAVVAL+K+LGVSERL VLIEGESLLND T IVVF VF +A  GV  +S + V+   VR+  GGP+VGL   M G
Sbjct:   40 QVVTLAGPGVAIATIITASIVKYVFPYGWDWNLSLMLGGILSATDPVAVVALLKDLGVSERLNVLIEGESLLNDATGIVVFIVFRDAFVGVADSSPAQVLVTAVRMSFGGPMVGLALGMFG 160          
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: A0A7S2SQN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQN5_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.160e-31
Identity = 66/119 (55.46%), Postives = 84/119 (70.59%), Query Frame = 1
Query:    1 KVLMLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAA----TGVGSTSVSTVVTQFVRLGLGGPLVGL 345
            +VL LAGPGV+V+T + A F KYVF +GW W   L FG+M SATDPVAVVAL K+LGV++RL  LIEGE L+NDG++IV+F++   A     T     S   VVT  ++L LGGP+VGL
Sbjct:  163 QVLFLAGPGVIVSTFLTALFVKYVFNYGWSWTLCLLFGSMMSATDPVAVVALFKDLGVNQRLGTLIEGEGLMNDGSAIVIFNICLAAIEKRRTNNAGLSAGDVVTTALQLSLGGPVVGL 281          
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: A0A5J4XFT3_9CHLO (Salt overly sensitive 1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XFT3_9CHLO)

HSP 1 Score: 119 bits (298), Expect = 2.400e-31
Identity = 62/112 (55.36%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    1 KVLMLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAATGVGSTSVSTVVTQFVRLGLGGPL 336
            +VL+LAGPGV++ T + A F KYVFP+ W W  SL FGAM SATDPVAV+AL++E+G  + L  +IEGESL NDG++ V+F +F NA  G   T  ST+ +Q  +L LGGPL
Sbjct:   74 QVLLLAGPGVVIGTALTAVFVKYVFPYNWTWLESLLFGAMLSATDPVAVIALLQEVGAEKELRTVIEGESLFNDGSAYVLFLLFHNALQGQELTVKSTI-SQLCQLSLGGPL 184          
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: A0A6H5LPB6_9PHAE (Na_H_Exchanger domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LPB6_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 4.410e-31
Identity = 65/121 (53.72%), Postives = 86/121 (71.07%), Query Frame = 1
Query:    1 KVLMLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAATGVGSTSVSTVVTQFVRLGLGGPLVGLFTAMIG 363
            +++ LAGPGV++   + A F K+V P+ WDWN S+ FG+M +ATDPVAVVAL++ELGVSE+L  LIEGESLLNDG++IVVF VF  A  G  S +   V+    RL LGGP +G    ++G
Sbjct:  128 QIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVFLEAVEG-HSRNWHEVIEFGARLALGGPAIGAVIGIMG 247          
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: A0A7S3JZM7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZM7_9STRA)

HSP 1 Score: 125 bits (313), Expect = 8.100e-31
Identity = 70/125 (56.00%), Postives = 85/125 (68.00%), Query Frame = 1
Query:    1 KVLMLAGPGVMVATIMMACFSKYVF-PFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAAT----GVGSTSVSTVVTQFVRLGLGGPLVGLFTAMI 360
            ++L LAGPGV+VAT++ A F+KYVF  + WDW T L FGA+ SATDPVAVVAL+KELGVSERL  LIEGESLLNDGT+IV+F VFF A               ++    RL   GP+VG+    I
Sbjct:   98 QILSLAGPGVLVATVLTAIFTKYVFVAYEWDWPTCLMFGAILSATDPVAVVALLKELGVSERLGTLIEGESLLNDGTAIVIFDVFFEALEKRPCSPSMPQALHIIELIFRLAALGPIVGVIIGFI 222          
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: A0A7S1UK40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK40_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.770e-30
Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 KVLMLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAATGVGSTSVSTVVTQFVRLGLGGPLVGL 345
            +VL+LA PGV++AT++ A     V P+ + +N S+ FGAM SATDPVAVVALMKELGVSERLA L+EGESL NDGTSIV+F VF +A TG  + +   ++  F+RL LGG + G+
Sbjct:  122 QVLVLAVPGVIMATLLTALIVWRVLPYNFPFNASMMFGAMLSATDPVAVVALMKELGVSERLATLMEGESLFNDGTSIVLFEVFRDALTGAANRNAGELIAFFLRLALGGAVAGI 236          
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: UPI001458FB68 (sodium/hydrogen exchanger 10-like isoform X4 n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI001458FB68)

HSP 1 Score: 122 bits (306), Expect = 7.070e-30
Identity = 59/120 (49.17%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    1 KVLMLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAATGVGSTSVSTVVTQFVRLGLGGPLVGLFTAMI 360
            +V++LA PG+ +A++     ++Y+F + WDWNT + FGA+ SATDPVAVVAL+++LG S++LA++IEGESLLNDG +IV F +F   +T  G      +V +FVR+ +GGPL G   A I
Sbjct:  120 QVVLLAIPGLALASLFTCILARYLFTYNWDWNTGMMFGAILSATDPVAVVALLRDLGASKKLAMVIEGESLLNDGAAIVFFQIFLKLSTSGGEIDGGEIVWEFVRVAVGGPLWGYLMAKI 239          
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: UPI0014581CAB (sodium/hydrogen exchanger 10-like isoform X1 n=3 Tax=Pecten maximus TaxID=6579 RepID=UPI0014581CAB)

HSP 1 Score: 122 bits (306), Expect = 7.180e-30
Identity = 59/120 (49.17%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    1 KVLMLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAATGVGSTSVSTVVTQFVRLGLGGPLVGLFTAMI 360
            +V++LA PG+ +A++     ++Y+F + WDWNT + FGA+ SATDPVAVVAL+++LG S++LA++IEGESLLNDG +IV F +F   +T  G      +V +FVR+ +GGPL G   A I
Sbjct:  120 QVVLLAIPGLALASLFTCILARYLFTYNWDWNTGMMFGAILSATDPVAVVALLRDLGASKKLAMVIEGESLLNDGAAIVFFQIFLKLSTSGGEIDGGEIVWEFVRVAVGGPLWGYLMAKI 239          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0H9_9PHAE1.120e-5886.78Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
D7G372_ECTSI2.650e-5886.78Sodium/hydrogen exchanger family n=1 Tax=Ectocarpu... [more]
D8LKR2_ECTSI9.410e-3862.81Sodium/hydrogen exchanger family protein n=1 Tax=E... [more]
A0A7S2SQN5_9STRA1.160e-3155.46Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A5J4XFT3_9CHLO2.400e-3155.36Salt overly sensitive 1 n=1 Tax=Trebouxia sp. A1-2... [more]
A0A6H5LPB6_9PHAE4.410e-3153.72Na_H_Exchanger domain-containing protein n=2 Tax=E... [more]
A0A7S3JZM7_9STRA8.100e-3156.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S1UK40_9STRA2.770e-3057.39Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
UPI001458FB687.070e-3049.17sodium/hydrogen exchanger 10-like isoform X4 n=2 T... [more]
UPI0014581CAB7.180e-3049.17sodium/hydrogen exchanger 10-like isoform X1 n=3 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126407contigH-elongata_contig126407:444..1414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.5
Seed ortholog evalue8.7e-49
Seed eggNOG ortholog2880.D7G372
EggNOG free text desc.potassium:proton antiporter activity
EggNOG OGsCOG0025@1,KOG1965@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size366
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126407.1967.1prot_H-elongata_contig126407.1967.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126407 453..1414 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929749.293083-UTR-H-elongata_contig126407:443..4521622929749.293083-UTR-H-elongata_contig126407:443..452Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126407 444..452 +
1691679142.657932-UTR-H-elongata_contig126407:443..4521691679142.657932-UTR-H-elongata_contig126407:443..452Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126407 444..452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929749.3447235-CDS-H-elongata_contig126407:452..6051622929749.3447235-CDS-H-elongata_contig126407:452..605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126407 453..605 +
1691679142.6675699-CDS-H-elongata_contig126407:452..6051691679142.6675699-CDS-H-elongata_contig126407:452..605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126407 453..605 +
1622929749.363561-CDS-H-elongata_contig126407:1210..14141622929749.363561-CDS-H-elongata_contig126407:1210..1414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126407 1211..1414 +
1691679142.6756032-CDS-H-elongata_contig126407:1210..14141691679142.6756032-CDS-H-elongata_contig126407:1210..1414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126407 1211..1414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126407.1967.1

>prot_H-elongata_contig126407.1967.1 ID=prot_H-elongata_contig126407.1967.1|Name=mRNA_H-elongata_contig126407.1967.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALM
KELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAATGVGSTSVSTVVTQF
VRLGLGGPLVGLFTAMIG*
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mRNA from alignment at H-elongata_contig126407:444..1414+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126407.1967.1 ID=mRNA_H-elongata_contig126407.1967.1|Name=mRNA_H-elongata_contig126407.1967.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=971bp|location=Sequence derived from alignment at H-elongata_contig126407:444..1414+ (Himanthalia elongata Himel1 dioecious)
AAGGTGCTGATGCTGGCCGGGCCAGGGGTGATGGTTGCAACGATCATGAT GGCGTGCTTTTCGAAGTACGTGTTCCCGTTTGGGTGGGACTGGAACACGT CGCTCTTCTTTGGAGCGATGACCAGCGCCACGGACCCCGTCGCCGTGGTT GCACTCATGAAGGTACACATCCTATTTATTTATGCTGTTTCGTTGTGTAC CCGATGTGTGTGTATGTGTGTGTGTGTTCTGGTAGCCGTCGATCGGGTTG ATATGCGGGGCCGAGACCTTACTCGAAAAAAAGGTATAAAACATGTACTT GAAATGTATGTACCTCCTTGAAGATCAAGTTACTGTCGTGCAAGGGCAGC TGTCCCGCTGAGCAAATTTTCCCTTTCAGCGATCCAGGCTCTCGCAGAGA GAGAGAAAGCTCTTACCCCCCCATCCCTATCAACATAATATTTTACCTAG CATAATGTTTTACCTAACATAATATTTTACCGAACATAATATTTTACCCA GCATAATGTTTTACCTAACATAATATTTTACCTAACATAATATTTTACCC AGCATAATGTTTTACCTAACATAATATTTTACCTAACATAATATATTACC TAACAGAATATCTTGCTTCTTTTGTTGTCCTTTAGTTTTTTTTTACTTGT TTGTGATTTGGTGTAATATTTGGTGTGATGTTCTGTTATTGATAGCTGTC TCTTGCTCTATAACGAAAGCCCTTTTTATTTTTGCCTTTTACCCGCTTTG TAACTCCAAACCGGCAGGAGCTTGGAGTTTCGGAGCGCCTAGCCGTCTTG ATCGAGGGAGAGAGTCTGTTAAACGACGGCACGTCCATCGTGGTGTTCTC AGTGTTCTTTAACGCCGCCACCGGGGTGGGATCGACCTCCGTCTCTACCG TTGTGACGCAGTTCGTGCGGCTGGGCTTGGGCGGTCCTTTGGTCGGGCTC TTCACGGCGATGATAGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig126407:444..1414+

>mRNA_H-elongata_contig126407.1967.1 ID=mRNA_H-elongata_contig126407.1967.1|Name=mRNA_H-elongata_contig126407.1967.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig126407:444..1414+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGCCGGGCCAGGGGTGATGGTTGCAACGATCATGATGGCGTGCTT
TTCGAAGTACGTGTTCCCGTTTGGGTGGGACTGGAACACGTCGCTCTTCT
TTGGAGCGATGACCAGCGCCACGGACCCCGTCGCCGTGGTTGCACTCATG
AAGATGCTGGCCGGGCCAGGGGTGATGGTTGCAACGATCATGATGGCGTG
CTTTTCGAAGTACGTGTTCCCGTTTGGGTGGGACTGGAACACGTCGCTCT
TCTTTGGAGCGATGACCAGCGCCACGGACCCCGTCGCCGTGGTTGCACTC
ATGAAGGAGCTTGGAGTTTCGGAGCGCCTAGCCGTCTTGATCGAGGGAGA
GAGTCTGTTAAACGACGGCACGTCCATCGTGGTGTTCTCAGTGTTCTTTA
ACGCCGCCACCGGGGTGGGATCGACCTCCGTCTCTACCGTTGTGACGCAG
TTCGTGCGGCTGGGCTTGGGCGGTCCTTTGGTCGGGCTCTTCACGGCGAT
GATAGGGTAAGAGCTTGGAGTTTCGGAGCGCCTAGCCGTCTTGATCGAGG
GAGAGAGTCTGTTAAACGACGGCACGTCCATCGTGGTGTTCTCAGTGTTC
TTTAACGCCGCCACCGGGGTGGGATCGACCTCCGTCTCTACCGTTGTGAC
GCAGTTCGTGCGGCTGGGCTTGGGCGGTCCTTTGGTCGGGCTCTTCACGG
CGATGATAGGGTAA
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