mRNA_H-elongata_contig126160.1952.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126160.1952.1
Unique NamemRNA_H-elongata_contig126160.1952.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig126160.1952.1 vs. uniprot
Match: A0A6H5K5I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I4_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 9.290e-53
Identity = 84/119 (70.59%), Postives = 92/119 (77.31%), Query Frame = 1 
Query:    1 IGGVSMPTVTGDFLAMSVFFYAMHCLEELGPAELVSWPEPTLAELRHAAEGFCAMEWDAVLESHSVSRSFHSKHTTSEEALAHRCVEVVYMMTLLRDGYGFPEHSRNVIYALESDGMEV 357
            IGG SMP ++GDFLAMSVFFYAMHCL  LGPAEL +WP PTL+ELR AA GFC MEW A+        +     +TSEE L HRCVEVVYM TLLRDGYGFPEHSRNV YALE+DGMEV
Sbjct:    8 IGGASMPALSGDFLAMSVFFYAMHCLHALGPAELAAWPRPTLSELRDAARGFCGMEWGALQNRKDAISAQDVLFSTSEEGLPHRCVEVVYMTTLLRDGYGFPEHSRNVTYALEADGMEV 126
[Close]
BLAST of mRNA_H-elongata_contig126160.1952.1 vs. uniprot
Match: D7FJZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ4_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 1.080e-48
Identity = 83/118 (70.34%), Postives = 89/118 (75.42%), Query Frame = 1 
Query:    1 IGGVSMPTVTGDFLAMSVFFYAMHCLEELGPAELVSWPEPTLAELRHAAEGFCAMEWDAVLESHSVSRSFHSKHTTSEEALAHRCVEVVYMMTLLRDGYGFPEHSRNVIYALESDGME 354
            IGGVSMP + GDFLAMSVFFYAMHCL  LGPAEL +WP PTL ELR AA GFC MEW A+        +     +TSEE L HRCVEVVYM TLLRDGYGFPEHSRNV YALE+ GME
Sbjct:  348 IGGVSMPALNGDFLAMSVFFYAMHCLHALGPAELAAWPRPTLFELRDAARGFCGMEWRALQSRKDAVSAQDVLFSTSEEGLPHRCVEVVYMTTLLRDGYGFPEHSRNVAYALEAGGME 465
[Close]
BLAST of mRNA_H-elongata_contig126160.1952.1 vs. uniprot
Match: A0A835YRC7_9STRA (Nucleoside phosphatase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC7_9STRA)

HSP 1 Score: 135 bits (339), Expect = 2.410e-34
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:    1 IGGVSMPTVTGDFLAMSVFFYAMHCLEELGPAELVSWPEPTLAELRHAAEGFCAMEWD--AVLESHSVSRSFHSKHTTSEEALAHRCVEVVYMMTLLRDGYGFPEHSRNVIYALESDGMEV 357
            + GV+MP V GDF AMSVFFY + C+ +LGPA L +WP P+LAEL  A + FC + W   A         +      TS+  LA+RCVE VYM+TLLRD YGFPEH RN+ +ALE++GMEV
Sbjct:  557 VDGVAMPPVAGDFYAMSVFFYGLDCVRQLGPAPLAAWPRPSLAELTAAVDAFCGVPWGELAAAGXXXXXXAAQRHRYTSKRGLAYRCVESVYMVTLLRDAYGFPEHGRNITFALEANGMEV 677
[Close]
BLAST of mRNA_H-elongata_contig126160.1952.1 vs. uniprot
Match: W7UB26_9STRA (Ectonucleoside triphosphate diphosphohydrolase 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UB26_9STRA)

HSP 1 Score: 116 bits (290), Expect = 9.860e-28
Identity = 54/119 (45.38%), Postives = 81/119 (68.07%), Query Frame = 1 
Query:    1 IGGVSMPTVTGDFLAMSVFFYAMHCLEELGPAELVSWPEPTLAELRHAAEGFCAMEWDAVLESHSVSRSFHSKHTTSEEALAHRCVEVVYMMTLLRDGYGFPEHSRNVIYALESDGMEV 357
            + G+  P +TG FLAMSVFF+A+ C+++LGP++L  WP P++ E+  AA  FCA  W + L + + + +F     T ++ L +RC EVVY+ TLL+ GYGFP  SR+V + L+ +GMEV
Sbjct:  504 LDGIEHPPLTGQFLAMSVFFFALDCMKQLGPSDLPHWPSPSIDEIEKAAARFCAQSWSS-LNTTATNHAF-----TRDDLLPYRCAEVVYIHTLLKHGYGFPGDSRDVTFVLDIEGMEV 616
[Close]
BLAST of mRNA_H-elongata_contig126160.1952.1 vs. uniprot
Match: A0A1Z5K914_FISSO (Golgi apyrase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K914_FISSO)

HSP 1 Score: 101 bits (252), Expect = 1.020e-22
Identity = 55/122 (45.08%), Postives = 72/122 (59.02%), Query Frame = 1 
Query:    1 IGGVSMPTVTGDFLAMSVFFYAMHCLEELGPAELV--SWPEPTLAELRHAAEGFCAMEWDAVLESHSVSRSFHSKHT-TSEEALAHRCVEVVYMMTLLRDGYGFPEHSRNVIYALESDGMEV 357
            +GGV  P V G FLAMS++F+ +  L  L   E +  SWP P++AEL  A  G C+ EW   L       S + KH  TS E L HRC+E VY++TLLRDG+GF   SR++ +    DG EV
Sbjct:  352 VGGVEHPQVQGKFLAMSLYFFTLDSLRVLSGHEALELSWPSPSIAELYDALPGLCSREWHTDL-------SINGKHEFTSNEVLPHRCLESVYLVTLLRDGFGFSMDSRDITFTFLVDGNEV 466
[Close]
BLAST of mRNA_H-elongata_contig126160.1952.1 vs. uniprot
Match: A0A7S2UAP1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAP1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.220e-22
Identity = 54/127 (42.52%), Postives = 73/127 (57.48%), Query Frame = 1 
Query:    1 IGGVSMPTVTGDFLAMSVFFYAMHCLEELG-PAE------LVSWPEPTLAELRHAAEGFCAMEWDAVLESHSVSRSFHSKHT-TSEEALAHRCVEVVYMMTLLRDGYGFPEHSRNVIYALESDGMEV 357
            +GG+  P V G F AMS++++ +  L  L  PAE       +SWP P++ EL +A EG C+  W   LE        H  HT T  E L HRC+E VYM+TLLRDG+GF   SR++ +  E +G EV
Sbjct:  399 VGGIEHPPVRGKFFAMSLYYFTLDSLRVLSHPAEDAHEALNLSWPTPSIEELHNALEGLCSRSWQGDLEDIQ-----HDAHTYTRAEVLPHRCIESVYMVTLLRDGFGFDSSSRDITFTFEVEGSEV 520
[Close]
BLAST of mRNA_H-elongata_contig126160.1952.1 vs. uniprot
Match: A0A7S1ZUU4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZUU4_TRICV)

HSP 1 Score: 100 bits (250), Expect = 2.040e-22
Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = 1 
Query:    1 IGGVSMPTVTGDFLAMSVFFYAMHCLEELGPAELV--SWPEPTLAELRHAAEGFCAMEWDAVLESHSVSRSFHSKHT-TSEEALAHRCVEVVYMMTLLRDGYGFPEHSRNVIYALESDGMEV 357
            +GGV  P + G F  MS++F+ + CL EL   + +  SWP P++ EL  A +G C+ +W + L     ++  HS H  T  E L HRC+E VY++TLLRDG+GF   SR++ +    DG EV
Sbjct:  338 VGGVDHPPLRGKFYGMSLYFFTLDCLRELSAHKGLDMSWPTPSIEELTDALDGLCSRDWHSDL-----AQIQHSSHEFTRAEVLPHRCIEAVYLVTLLRDGFGFKPKSRDITFTFHVDGNEV 454
[Close]
BLAST of mRNA_H-elongata_contig126160.1952.1 vs. uniprot
Match: B7FXH1_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FXH1_PHATC)

HSP 1 Score: 98.2 bits (243), Expect = 2.010e-21
Identity = 55/127 (43.31%), Postives = 70/127 (55.12%), Query Frame = 1 
Query:    1 IGGVSMPTVTGDFLAMSVFFYAMHCLEELG-------PAELVSWPEPTLAELRHAAEGFCAMEWDAVLESHSVSRSFHSKHT-TSEEALAHRCVEVVYMMTLLRDGYGFPEHSRNVIYALESDGMEV 357
            +GGV  P + G FLAMS+FF+A+  L EL         A   SWP P++ EL  A EG C+  W   L      +  H  H  T  E L HRC+E VYM+TLLRDG+GF   SR++ +    DG EV
Sbjct:  393 VGGVEHPPIRGKFLAMSLFFFALDSLRELSRNHPQAHQALNESWPTPSIQELFDALEGLCSRSWHDDLV-----KIQHDAHAFTRAEVLPHRCLEAVYMVTLLRDGFGFAPESRDITFTFLVDGSEV 514
[Close]
BLAST of mRNA_H-elongata_contig126160.1952.1 vs. uniprot
Match: A0A448ZIJ5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZIJ5_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 9.500e-21
Identity = 50/126 (39.68%), Postives = 74/126 (58.73%), Query Frame = 1 
Query:    1 IGGVSMPTVTGDFLAMSVFFYAMHCL-------EELGPAELVSWPEPTLAELRHAAEGFCAMEWDAVLESHSVSRSFHSKHTTSEEALAHRCVEVVYMMTLLRDGYGFPEHSRNVIYALESDGMEV 357
            +GGV  P + G FLAMS++F+++  L       EE   A   +WP P++ EL++A +G C+  W   +E    + SF     T +E L HRC+E VYM+TLL+DG+GF   SR++ +    DG EV
Sbjct:  384 VGGVEHPPIRGKFLAMSLYFFSLDSLRVFSEPDEEAHYALDEAWPTPSIDELQNALDGLCSRNWQGDMELQEGTHSF-----TRKEVLPHRCLETVYMVTLLKDGFGFHPSSRDITFTFLVDGDEV 504
[Close]
BLAST of mRNA_H-elongata_contig126160.1952.1 vs. uniprot
Match: A0A7S3PYM3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PYM3_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.340e-20
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:    1 IGGVSMPTVTGDFLAMSVFFYAMHCLEELGPAELVS--WPEPTLAELRHAAEGFCAMEWDAVLESHSVSRSFHSKHTTSEEALAHRCVEVVYMMTLLRDGYGFPEHSRNVIYALESDGMEV 357
            +GGV  P + G F AMS+FF+ + CL EL   +L++  WP P++A+L  A +  C+  W   LE   +  + H    T  + L  RC+E VYM+TLLRDG+GF   SR++ +    DG EV
Sbjct:  446 VGGVEHPPIRGHFFAMSLFFFTLDCLRELSGHKLLNKHWPTPSIADLTSALDSLCSRHWSNDLE--LIQENSHE--FTRAKVLPDRCLESVYMVTLLRDGFGFEPESRDITFTYLVDGSEV 562
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126160.1952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5K5I4_9PHAE9.290e-5370.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJZ4_ECTSI1.080e-4870.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YRC7_9STRA2.410e-3452.89Nucleoside phosphatase family-domain-containing pr... [more]
W7UB26_9STRA9.860e-2845.38Ectonucleoside triphosphate diphosphohydrolase 1 n... [more]
A0A1Z5K914_FISSO1.020e-2245.08Golgi apyrase n=2 Tax=Fistulifera solaris TaxID=15... [more]
A0A7S2UAP1_9STRA1.220e-2242.52Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1ZUU4_TRICV2.040e-2240.98Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
B7FXH1_PHATC2.010e-2143.31Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A448ZIJ5_9STRA9.500e-2139.68Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3PYM3_9STRA1.340e-2040.50Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126160contigH-elongata_contig126160:334..1197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue4e-38
Seed eggNOG ortholog2880.D7FJZ4
Preferred nameENTPD7
KEGG rclassRC00002
KEGG koko:K01510,ko:K01511,ko:K12305,ko:K14642,ko:K14643
KEGG ReactionR00086,R00122,R00155,R00159,R00328,R00335,R00514,R00569,R00719,R00961,R02092,R02095
KEGG Pathwayko00230,ko00240,ko04142,ko05169,map00230,map00240,map04142,map05169
GOsGO:0000003,GO:0000139,GO:0000421,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0004382,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005776,GO:0005794,GO:0006139,GO:0006152,GO:0006163,GO:0006195,GO:0006213,GO:0006220,GO:0006244,GO:0006256,GO:0006464,GO:0006486,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007548,GO:0008150,GO:0008152,GO:0008406,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009125,GO:0009126,GO:0009128,GO:0009132,GO:0009134,GO:0009135,GO:0009137,GO:0009138,GO:0009140,GO:0009141,GO:0009143,GO:0009144,GO:0009147,GO:0009150,GO:0009154,GO:0009158,GO:0009161,GO:0009164,GO:0009166,GO:0009167,GO:0009169,GO:0009179,GO:0009181,GO:0009185,GO:0009191,GO:0009193,GO:0009195,GO:0009199,GO:0009203,GO:0009205,GO:0009208,GO:0009218,GO:0009222,GO:0009259,GO:0009261,GO:0009653,GO:0009887,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010559,GO:0010560,GO:0010604,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017110,GO:0017111,GO:0017144,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019693,GO:0022414,GO:0030139,GO:0030173,GO:0030334,GO:0030659,GO:0030666,GO:0031090,GO:0031166,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031310,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031410,GO:0031982,GO:0031984,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032879,GO:0034404,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034656,GO:0035262,GO:0036211,GO:0036384,GO:0040012,GO:0042278,GO:0042454,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043262,GO:0043273,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045134,GO:0045137,GO:0046031,GO:0046032,GO:0046034,GO:0046036,GO:0046039,GO:0046048,GO:0046128,GO:0046130,GO:0046131,GO:0046133,GO:0046135,GO:0046434,GO:0046483,GO:0046700,GO:0046710,GO:0046712,GO:0047429,GO:0048471,GO:0048513,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051270,GO:0055086,GO:0060049,GO:0060050,GO:0060255,GO:0061458,GO:0065007,GO:0070085,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072529,GO:0080090,GO:0097636,GO:0097637,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:1901068,GO:1901069,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1903018,GO:1903020,GO:2000112,GO:2000145
EggNOG free text desc.nucleoside-diphosphatase activity
EggNOG OGsCOG5371@1,KOG1386@2759
EC3.6.1.5,3.6.1.6
COG Functional cat.GO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04090
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126160.1952.1prot_H-elongata_contig126160.1952.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126160 334..1182 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.7273784-CDS-H-elongata_contig126160:333..4871622929747.7273784-CDS-H-elongata_contig126160:333..487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126160 334..487 -
1691679142.0101635-CDS-H-elongata_contig126160:333..4871691679142.0101635-CDS-H-elongata_contig126160:333..487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126160 334..487 -
1622929747.7419364-CDS-H-elongata_contig126160:985..11821622929747.7419364-CDS-H-elongata_contig126160:985..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126160 986..1182 -
1691679142.0229616-CDS-H-elongata_contig126160:985..11821691679142.0229616-CDS-H-elongata_contig126160:985..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126160 986..1182 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.7607985-UTR-H-elongata_contig126160:1182..11971622929747.7607985-UTR-H-elongata_contig126160:1182..1197Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126160 1183..1197 -
1691679142.0317402-UTR-H-elongata_contig126160:1182..11971691679142.0317402-UTR-H-elongata_contig126160:1182..1197Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126160 1183..1197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126160.1952.1

>prot_H-elongata_contig126160.1952.1 ID=prot_H-elongata_contig126160.1952.1|Name=mRNA_H-elongata_contig126160.1952.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MPTVTGDFLAMSVFFYAMHCLEELGPAELVSWPEPTLAELRHAAEGFCAM
EWDAVLESHSVSRSFHSKHTTSEEALAHRCVEVVYMMTLLRDGYGFPEHS
RNVIYALESDGMEVHV*
back to top

mRNA from alignment at H-elongata_contig126160:334..1197-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126160.1952.1 ID=mRNA_H-elongata_contig126160.1952.1|Name=mRNA_H-elongata_contig126160.1952.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=864bp|location=Sequence derived from alignment at H-elongata_contig126160:334..1197- (Himanthalia elongata Himel1 dioecious)
ATCGGGGGCGTCAGTATGCCGACTGTGACCGGGGACTTCTTGGCCATGTC
GGTGTTCTTCTACGCGATGCATTGCCTTGAAGAGCTGGGCCCCGCTGAGC
TCGTCTCTTGGCCGGAGCCGACTCTGGCCGAGCTGCGACACGCTGCCGAG
GGTTTTTGCGCGATGGAGTGGGACGCGGTGCTGGAGAGCCACTCGGTGAG
TCGCAGTTTTCAGTTTTTATTAAATTGTACAAAACCGCGCAATCCGGCCC
TGTCATGCTAGTCATTCTGTGCTGCATGTAACCCATCCGGTTTTATGTAT
GTGTGTGTGTGCGCGCTCTTGTGCTACTGAAGTGGTGTGTCTTGAGTCGA
TAATCTCTCTCTCCCCCCCTTCCCCCTCTCCCTCTCCCTACCTCTCTGAG
TTTGTATGCTTTCGAGTCACTTTTGAAACCCTAATTTTGTCGAGCGCCTG
CTTGCTCTCTATCTATCTACCTGTCTATCTATCTATCTACCTGTCTGTCG
CTCGTCTAGAATACCAATAAAACAGTCAGCCCTCTCCCCCCTGTTCATTT
TCCAGTGGTAGCAGGAGATGGCGATGGACCTGTACGATCCACCAACACGA
CTCGGGAGTGTCTACCCCCTAACATTTCCTCGAAAATGATCGCCCGGTGT
TTTACCCGGATCGATCTCCCTGCACCGTGATGTGACGTAACCTCGACAGT
TGGCGATAAGCTCCAAGCACACCACGTCGGAGGAGGCCCTCGCCCATCGT
TGCGTGGAGGTCGTTTACATGATGACTCTCCTTCGAGACGGCTACGGCTT
CCCGGAACATTCTCGGAACGTTATCTACGCTCTGGAGTCCGACGGAATGG
AGGTGCATGTCTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig126160:334..1197-

>mRNA_H-elongata_contig126160.1952.1 ID=mRNA_H-elongata_contig126160.1952.1|Name=mRNA_H-elongata_contig126160.1952.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig126160:334..1197- (Himanthalia elongata Himel1 dioecious)
ATGCCGACTGTGACCGGGGACTTCTTGGCCATGTCGGTGTTCTTCTACGC
GATGCATTGCCTTGAAGAGCTGGGCCCCGCTGAGCTCGTCTCTTGGCCGG
AGCCGACTCTGGCCGAGCTGCGACACGCTGCCGAGGGTTTTTGCGCGATG
GAGTGGGACGCGGTGCTGGAGAGCCACTCGGTGAGTCGCAGTTTTCAATG
CCGACTGTGACCGGGGACTTCTTGGCCATGTCGGTGTTCTTCTACGCGAT
GCATTGCCTTGAAGAGCTGGGCCCCGCTGAGCTCGTCTCTTGGCCGGAGC
CGACTCTGGCCGAGCTGCGACACGCTGCCGAGGGTTTTTGCGCGATGGAG
TGGGACGCGGTGCTGGAGAGCCACTCGGTGAGTCGCAGTTTTCACTCCAA
GCACACCACGTCGGAGGAGGCCCTCGCCCATCGTTGCGTGGAGGTCGTTT
ACATGATGACTCTCCTTCGAGACGGCTACGGCTTCCCGGAACATTCTCGG
AACGTTATCTACGCTCTGGAGTCCGACGGAATGGAGGTGCATGTCTGACT
CCAAGCACACCACGTCGGAGGAGGCCCTCGCCCATCGTTGCGTGGAGGTC
GTTTACATGATGACTCTCCTTCGAGACGGCTACGGCTTCCCGGAACATTC
TCGGAACGTTATCTACGCTCTGGAGTCCGACGGAATGGAGGTGCATGTCT
GA
back to top