mRNA_H-elongata_contig125387.1903.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125387.1903.1
Unique NamemRNA_H-elongata_contig125387.1903.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: D7FRT2_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT2_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 7.050e-9
Identity = 29/71 (40.85%), Postives = 39/71 (54.93%), Query Frame = 1
Query:   31 YKDEENMTNESCIEHCRNEGNEFAGTYNKTRCRCTNREWKVSRYGLSDNCTEMCPGDVSQICGGKWAVSSW 243
            Y+DE+ +T  SCIE CR EG E AG    ++C C   +   +RYG    C   C GD  Q CGG+ + + W
Sbjct:  628 YEDEDTLTPASCIESCREEGEELAGVQGGSQCWCGTTD-DYTRYGTG-TCNFSCSGDSEQTCGGRESANVW 696          
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: A0A8K0EL98_BRALA (PTPRF protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0EL98_BRALA)

HSP 1 Score: 58.2 bits (139), Expect = 6.510e-8
Identity = 27/80 (33.75%), Postives = 42/80 (52.50%), Query Frame = 1
Query:   13 RTMSWGYKDEENMTNESCIEHCRNEGNEFAGTYNKTRCRCTNREW--KVSRYGLSDNCTEMCPGDVSQICGGKWAVSSWR 246
            R +  G K  + MT + CIEHCR+EG  +AGT     C C N     ++ R   +  C+  C G+  + CGG W ++ ++
Sbjct: 1203 RRLPKGPKISQEMTTDLCIEHCRDEGYNYAGTQYYEECWCGNERHFSRIGRQRKNKQCSTPCRGNDDEKCGGPWRLAVYK 1282          
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: A0A8J9ZFJ5_BRALA (PTPRF protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZFJ5_BRALA)

HSP 1 Score: 58.2 bits (139), Expect = 6.540e-8
Identity = 27/80 (33.75%), Postives = 42/80 (52.50%), Query Frame = 1
Query:   13 RTMSWGYKDEENMTNESCIEHCRNEGNEFAGTYNKTRCRCTNREW--KVSRYGLSDNCTEMCPGDVSQICGGKWAVSSWR 246
            R +  G K  + MT + CIEHCR+EG  +AGT     C C N     ++ R   +  C+  C G+  + CGG W ++ ++
Sbjct: 1203 RRLPKGPKISQEMTTDLCIEHCRDEGYNYAGTQYYEECWCGNERHFSRIGRQRKNKQCSTPCRGNDDEKCGGPWRLAVYK 1282          
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: U9UIT6_RHIID (Uncharacterized protein n=6 Tax=Rhizophagus TaxID=1129544 RepID=U9UIT6_RHIID)

HSP 1 Score: 54.3 bits (129), Expect = 1.290e-6
Identity = 25/68 (36.76%), Postives = 37/68 (54.41%), Query Frame = 1
Query:   43 ENMTNESCIEHCRNEGNEFAGTYNKTRCRCTNREWKVSRYGLSDNCTEMCPGDVSQICGGKWAVSSWR 246
            E MT E CI +CR     +AG   + +C C N    + R   S+ C+  CPG+  Q+CGG +A+S + 
Sbjct:  193 ETMTVEECINYCREGNYRYAGLEARVQCFCGNTYNPLGRLLGSEYCSNSCPGNNYQLCGGSFALSIYE 260          
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: A0A8B6GN44_MYTGA (WSC domain-containing protein (Fragment) n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GN44_MYTGA)

HSP 1 Score: 52.4 bits (124), Expect = 4.890e-6
Identity = 23/73 (31.51%), Postives = 39/73 (53.42%), Query Frame = 1
Query:   49 MTNESCIEHCRNEGNEFAGTYNKTRCRCTNREWKVSRYGLSD------NCTEMCPGDVSQICGGKWAVSSWRT 249
            M N  C+ +C+ +G  ++GT     C C +  ++ S   + D      +C ++C  D SQICGG W +S ++T
Sbjct:   85 MENNKCLVYCKEQGYMYSGTQGGKECWCGDDPYQFSPADVPDEYQQDYDCNQVCLVDSSQICGGPWRLSVYKT 157          
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: A0A6H5GQK3_9HEMI (Uncharacterized protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GQK3_9HEMI)

HSP 1 Score: 52.8 bits (125), Expect = 4.950e-6
Identity = 25/79 (31.65%), Postives = 41/79 (51.90%), Query Frame = 1
Query:    4 AYARTMSWGYKD-EENMTNESCIEHCRNEGNEFAGTYNKTRCRCTNREWKVSRYGLSDNCTEMCPGDVSQICGGKWAVS 237
            A AR M+   KD + ++TN+ CI++C+     +A T  K +C C+N           D C + C G+  + CGG + +S
Sbjct:   71 AQARLMTGAQKDFQGSLTNQKCIDYCKERHFSYAATQFKYQCFCSNERPHFKSSAEEDECNQPCDGNSEETCGGGYRLS 149          
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: A0A6H5GN81_9HEMI (Uncharacterized protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GN81_9HEMI)

HSP 1 Score: 52.8 bits (125), Expect = 4.980e-6
Identity = 25/79 (31.65%), Postives = 41/79 (51.90%), Query Frame = 1
Query:    4 AYARTMSWGYKD-EENMTNESCIEHCRNEGNEFAGTYNKTRCRCTNREWKVSRYGLSDNCTEMCPGDVSQICGGKWAVS 237
            A AR M+   KD + ++TN+ CI++C+     +A T  K +C C+N           D C + C G+  + CGG + +S
Sbjct:  214 AQARLMTGAQKDFQGSLTNQKCIDYCKERHFSYAATQFKYQCFCSNERPHFKSSAEEDECNQPCDGNSEETCGGGYRLS 292          
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: A0A8J4AYG8_9CHLO (Uncharacterized protein (Fragment) n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AYG8_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 1.290e-5
Identity = 26/74 (35.14%), Postives = 36/74 (48.65%), Query Frame = 1
Query:   31 YKDEENMTNESCIEHCRNEGNEFAGTYNKTRCRCTNREWKVSRYGLSDNCTEMCPGDVSQICGGKWAVSSWRTS 252
            Y+  + MT + C E    +G  + G    T+C   N   +    G S  C   C GD SQ+CGG W +S +RTS
Sbjct:  257 YEQSDKMTIDHCREVALAQGYIYFGVEAGTQCFGANNISRAQTNGRSAYCNWRCAGDDSQVCGGDWVISIYRTS 330          
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: A0A179GQT0_PURLI (WSC domain-containing protein n=1 Tax=Purpureocillium lilacinum TaxID=33203 RepID=A0A179GQT0_PURLI)

HSP 1 Score: 50.8 bits (120), Expect = 2.370e-5
Identity = 24/68 (35.29%), Postives = 34/68 (50.00%), Query Frame = 1
Query:   49 MTNESCIEHCRNEGNEFAGTYNKTRCRCTNREWKVSRYGLSDNCTEMCPGDVSQICGGKWAVSSWRTS 252
            M+N +CI+HC++ G  FAGT     C C +     +      +C   C G   Q CGG WA+S +  S
Sbjct:  546 MSNSTCIDHCKSRGYTFAGTECGKECWCGSSIRDDAVRLPDSSCGSPCQGAGGQFCGGDWAISVFTCS 613          
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: A0A3M7MV32_9EURO (Uncharacterized protein (Fragment) n=1 Tax=Chaetothyriales sp. CBS 135597 TaxID=2249420 RepID=A0A3M7MV32_9EURO)

HSP 1 Score: 50.8 bits (120), Expect = 2.420e-5
Identity = 24/64 (37.50%), Postives = 28/64 (43.75%), Query Frame = 1
Query:   31 YKDEENMTNESCIEHCRNEGNEFAGTYNKTRCRCTNREWKVSRYGLSDNCTEMCPGDVSQICGG 222
            Y D  N+T ESCIE C N G  +AG      C C N            +C   C G   Q+CGG
Sbjct:   67 YVDASNLTEESCIEFCDNNGFAYAGVEYSQECFCANVIGSSGSLADDSDCNMACTGSSDQLCGG 130          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FRT2_ECTSI7.050e-940.85EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A8K0EL98_BRALA6.510e-833.75PTPRF protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]
A0A8J9ZFJ5_BRALA6.540e-833.75PTPRF protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]
U9UIT6_RHIID1.290e-636.76Uncharacterized protein n=6 Tax=Rhizophagus TaxID=... [more]
A0A8B6GN44_MYTGA4.890e-631.51WSC domain-containing protein (Fragment) n=1 Tax=M... [more]
A0A6H5GQK3_9HEMI4.950e-631.65Uncharacterized protein n=1 Tax=Nesidiocoris tenui... [more]
A0A6H5GN81_9HEMI4.980e-631.65Uncharacterized protein n=1 Tax=Nesidiocoris tenui... [more]
A0A8J4AYG8_9CHLO1.290e-535.14Uncharacterized protein (Fragment) n=2 Tax=Volvox ... [more]
A0A179GQT0_PURLI2.370e-535.29WSC domain-containing protein n=1 Tax=Purpureocill... [more]
A0A3M7MV32_9EURO2.420e-537.50Uncharacterized protein (Fragment) n=1 Tax=Chaetot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125387contigH-elongata_contig125387:904..1692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score65.9
Seed ortholog evalue1e-08
Seed eggNOG ortholog588596.U9UFT6
EggNOG free text desc.WSC domain
EggNOG OGs39X52@33154,3P073@4751,KOG4157@1,KOG4157@2759
COG Functional cat.GO
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size260
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125387.1903.1prot_H-elongata_contig125387.1903.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125387 922..1687 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929740.7925835-UTR-H-elongata_contig125387:903..9211622929740.7925835-UTR-H-elongata_contig125387:903..921Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig125387 904..921 +
1691679139.7305317-UTR-H-elongata_contig125387:903..9211691679139.7305317-UTR-H-elongata_contig125387:903..921Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig125387 904..921 +
1622929740.8591127-UTR-H-elongata_contig125387:1687..16921622929740.8591127-UTR-H-elongata_contig125387:1687..1692Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig125387 1688..1692 +
1691679139.7744517-UTR-H-elongata_contig125387:1687..16921691679139.7744517-UTR-H-elongata_contig125387:1687..1692Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig125387 1688..1692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929740.810151-CDS-H-elongata_contig125387:921..9631622929740.810151-CDS-H-elongata_contig125387:921..963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125387 922..963 +
1691679139.7488666-CDS-H-elongata_contig125387:921..9631691679139.7488666-CDS-H-elongata_contig125387:921..963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125387 922..963 +
1622929740.8243794-CDS-H-elongata_contig125387:1149..12111622929740.8243794-CDS-H-elongata_contig125387:1149..1211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125387 1150..1211 +
1691679139.7580395-CDS-H-elongata_contig125387:1149..12111691679139.7580395-CDS-H-elongata_contig125387:1149..1211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125387 1150..1211 +
1622929740.8419492-CDS-H-elongata_contig125387:1554..16871622929740.8419492-CDS-H-elongata_contig125387:1554..1687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125387 1555..1687 +
1691679139.7661657-CDS-H-elongata_contig125387:1554..16871691679139.7661657-CDS-H-elongata_contig125387:1554..1687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125387 1555..1687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125387.1903.1

>prot_H-elongata_contig125387.1903.1 ID=prot_H-elongata_contig125387.1903.1|Name=mRNA_H-elongata_contig125387.1903.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
MSWGYKDEENMTNESCIEHCRNEGNEFAGTYNKTRCRCTNREWKVSRYGL
SDNCTEMCPGDVSQICGGKWAVSSWRTS*
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mRNA from alignment at H-elongata_contig125387:904..1692+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125387.1903.1 ID=mRNA_H-elongata_contig125387.1903.1|Name=mRNA_H-elongata_contig125387.1903.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=789bp|location=Sequence derived from alignment at H-elongata_contig125387:904..1692+ (Himanthalia elongata Himel1 dioecious)
CAAGCTTATGCTCGTACGATGTCTTGGGGCTACAAGGACGAAGAAAACAT GACGAACGAGGTGCAAGAGACAAACTAAATGCATCCCACCCCGCCCCATA ATTGACGTCATTCATCGTTTCACATATTCTTATCATGTCGTTAATTTGCT CTATCGTGTGAAATGATGACGCTCGTCAACTCCAGAATGTCATATAATTT CTTTCTTGGCACGTTTCGCTATATCTGTGAACTGATTCCTCGACAGTCGT GCATTGAGCACTGCAGGAATGAGGGGAACGAGTTCGCCGGTACCTACAAT AAGACAAGGTAAGATGGATGATTGGTGATAACATCGATAAATCCGAGATT TCTGGAGATTTTCACTCTTCTTTTTCTTGGATGACATTAAAAGCTCTATG CTAAGGCTATTGTAATGCACAACTGGAAGCGTCGAACGGATGGTTCTCAA AAGCGGAGGTATCGCATTATGGTGAAAGTCGTATTTAATCTACACTGCGC CCGAAAAGTAGAAACCGCTCTATCTTTACCCTCTGACCAGACCCTGACCC GCGCTTGCGCGAGTCTCAATTCACCAAAGAGGCTCGTAGGCTGGCGACTC TTTTTCATTTCTCCCTTATTATGCTCCTTACCTCAATGCCGACCGCCGTA GGTGCCGATGTACTAACAGGGAATGGAAGGTTTCTAGATACGGATTGTCT GATAACTGCACAGAGATGTGCCCTGGAGATGTAAGTCAGATCTGTGGTGG TAAGTGGGCCGTTTCATCTTGGCGAACTTCATAAGAATT
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Coding sequence (CDS) from alignment at H-elongata_contig125387:904..1692+

>mRNA_H-elongata_contig125387.1903.1 ID=mRNA_H-elongata_contig125387.1903.1|Name=mRNA_H-elongata_contig125387.1903.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig125387:904..1692+ (Himanthalia elongata Himel1 dioecious)
ATGTCTTGGGGCTACAAGGACGAAGAAAACATGACGAACGAGATGTCTTG
GGGCTACAAGGACGAAGAAAACATGACGAACGAGTCGTGCATTGAGCACT
GCAGGAATGAGGGGAACGAGTTCGCCGGTACCTACAATAAGACAAGTCGT
GCATTGAGCACTGCAGGAATGAGGGGAACGAGTTCGCCGGTACCTACAAT
AAGACAAGGTGCCGATGTACTAACAGGGAATGGAAGGTTTCTAGATACGG
ATTGTCTGATAACTGCACAGAGATGTGCCCTGGAGATGTAAGTCAGATCT
GTGGTGGTAAGTGGGCCGTTTCATCTTGGCGAACTTCATAAGTGCCGATG
TACTAACAGGGAATGGAAGGTTTCTAGATACGGATTGTCTGATAACTGCA
CAGAGATGTGCCCTGGAGATGTAAGTCAGATCTGTGGTGGTAAGTGGGCC
GTTTCATCTTGGCGAACTTCATAA
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