mRNA_H-elongata_contig124880.1875.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124880.1875.1
Unique NamemRNA_H-elongata_contig124880.1875.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124880.1875.1 vs. uniprot
Match: A0A6H5KBW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW2_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 5.480e-18
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 VQKQYNDKHMFEMIHMTLFLAAIFHSFFVGLVAYYSRNINRRWDIFEDDEMRRF 162
            V  +Y DKH FE IHM LFLAA+ H+FFVG+VA Y+R INRRWDIFEDDEMRR+
Sbjct:  102 VDIEYGDKHFFEQIHMALFLAALLHTFFVGVVALYARQINRRWDIFEDDEMRRY 155
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BLAST of mRNA_H-elongata_contig124880.1875.1 vs. uniprot
Match: D7FXU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU3_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 5.480e-18
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 VQKQYNDKHMFEMIHMTLFLAAIFHSFFVGLVAYYSRNINRRWDIFEDDEMRRF 162
            V  +Y DKH FE IHM LFLAA+ H+FFVG+VA Y+R INRRWDIFEDDEMRR+
Sbjct:  110 VDIEYGDKHFFEQIHMALFLAALLHTFFVGVVALYARQINRRWDIFEDDEMRRY 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124880.1875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBW2_9PHAE5.480e-1872.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXU3_ECTSI5.480e-1872.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124880contigH-elongata_contig124880:1682..1843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue2.1e-11
Seed eggNOG ortholog2880.D7FXU3
KEGG koko:K08472
EggNOG free text desc.Mlo family
EggNOG OGs2CZNV@1,2SB25@2759
Ec32 ortholog descriptionMlo-related protein
Ec32 orthologEc-20_003310.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04030
Hectar predicted targeting categorysignal peptide
Exons1
Model size162
Cds size135
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929737.6098552-CDS-H-elongata_contig124880:1681..18161622929737.6098552-CDS-H-elongata_contig124880:1681..1816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124880 1682..1816 -
1691679138.546438-CDS-H-elongata_contig124880:1681..18161691679138.546438-CDS-H-elongata_contig124880:1681..1816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124880 1682..1816 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929737.632553-UTR-H-elongata_contig124880:1816..18431622929737.632553-UTR-H-elongata_contig124880:1816..1843Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124880 1817..1843 -
1691679138.5576584-UTR-H-elongata_contig124880:1816..18431691679138.5576584-UTR-H-elongata_contig124880:1816..1843Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124880 1817..1843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124880.1875.1prot_H-elongata_contig124880.1875.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124880 1682..1816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124880.1875.1

>prot_H-elongata_contig124880.1875.1 ID=prot_H-elongata_contig124880.1875.1|Name=mRNA_H-elongata_contig124880.1875.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
MFEMIHMTLFLAAIFHSFFVGLVAYYSRNINRRWDIFEDDEMRRF
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mRNA from alignment at H-elongata_contig124880:1682..1843-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124880.1875.1 ID=mRNA_H-elongata_contig124880.1875.1|Name=mRNA_H-elongata_contig124880.1875.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig124880:1682..1843- (Himanthalia elongata Himel1 dioecious)
GTGCAAAAACAGTACAACGACAAGCACATGTTCGAGATGATCCACATGAC
GCTTTTCCTGGCGGCGATCTTCCACTCCTTCTTCGTCGGCCTCGTGGCCT
ACTACTCGAGGAACATCAACCGGCGTTGGGACATCTTCGAGGACGACGAG
ATGCGCAGGTTT
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Coding sequence (CDS) from alignment at H-elongata_contig124880:1682..1843-

>mRNA_H-elongata_contig124880.1875.1 ID=mRNA_H-elongata_contig124880.1875.1|Name=mRNA_H-elongata_contig124880.1875.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig124880:1682..1843- (Himanthalia elongata Himel1 dioecious)
ATGTTCGAGATGATCCACATGACGCTTTTCCTGGCGGCGATCTTCCACTC
CTTCTTCGTCGGCCTCGTGGCCTACTACTCGAGGAACATCAACCGGCGTT
GGGACATCTTCGAGGACGACGAGATGCGCAGGTTTATGTTCGAGATGATC
CACATGACGCTTTTCCTGGCGGCGATCTTCCACTCCTTCTTCGTCGGCCT
CGTGGCCTACTACTCGAGGAACATCAACCGGCGTTGGGACATCTTCGAGG
ACGACGAGATGCGCAGGTTT
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