mRNA_H-elongata_contig124876.1874.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: D8LFK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK6_ECTSI) HSP 1 Score: 154 bits (390), Expect = 2.160e-40 Identity = 95/193 (49.22%), Postives = 104/193 (53.89%), Query Frame = 1
Query: 1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKRHAFSVIHYGEDEXXXXXXXXKLENVRGRKAELGGDGAVAAASGSLSKAGAPGGGDGVE---------------------------EEDASEEDRNSDGGSVGGFLDVDTYAFVPAAEEISSAQAAPCVRFLLD 498
VIHVGELFGDSV MTPGQ+PWGRTTS+ECQEELASKFHCILKVP+PSWPHSRDTLTVWKRH+F I Y +D+ X X G S K G G G G + +D S G G LDVD YAFVP E + AQAAPC RFLLD
Sbjct: 228 VIHVGELFGDSVSMTPGQSPWGRTTSQECQEELASKFHCILKVPLPSWPHSRDTLTVWKRHSFCSIQYDDDDDSDXNEAXXXXXXXXXXXXAQGKEPGEKGKNSSPK-GVSGDGHGXXXXXRKGXXXXXXXXXXXXXXXXXXXXXRSSSGSDDFGSIEGLPIGMLDVDMYAFVPEDERMPCAQAAPCARFLLD 419
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: A0A6H5JT97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT97_9PHAE) HSP 1 Score: 147 bits (372), Expect = 1.560e-39 Identity = 99/193 (51.30%), Postives = 108/193 (55.96%), Query Frame = 1
Query: 1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKRHAFSVIHYGEDEXXXXXXXXKLENVRGRKAELGGDGAVAA-----------------ASGSLSKAGAPGGGDG----------VEEEDASEEDRNSDGGSVGGFLDVDTYAFVPAAEEISSAQAAPCVRFLLD 498
VIHVGELFGDSV MTPGQ+PWGRTTS+ECQEELASKFHCILKVP+PSWPHSRDTLTVWKRH+F I Y + XXXXXXXX A+G K G G G + +D S G G LDVD YAFVP E + AQAAPC RFLLD
Sbjct: 227 VIHVGELFGDSVSMTPGQSPWGRTTSQECQEELASKFHCILKVPLPSWPHSRDTLTVWKRHSFCSIQYDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDREANGKGRKGGKKAEGSGKXXXXXXXXXXXXXSSGSDDFGSIEGLPIGMLDVDMYAFVPEDETMPCAQAAPCARFLLD 419
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: A0A7S2YLX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YLX6_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.880e-18 Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKRHAFSVIHYGEDE 216
++HVGE+FGD++ M G PWGR++S Q++LA++FHCILK+ +PSW H RD+LTVWKR I + +E
Sbjct: 29 IVHVGEIFGDTLSMDQG--PWGRSSSPMFQQQLAAEFHCILKLKLPSWLHVRDSLTVWKRSEVCSIIFASEE 98
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: B7G708_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G708_PHATC) HSP 1 Score: 89.4 bits (220), Expect = 5.090e-18 Identity = 39/73 (53.42%), Postives = 57/73 (78.08%), Query Frame = 1
Query: 1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKR-HAFSVIHYGEDE 216
VIHVGEL+GD++ M QAPWGR++S E Q++LA++FHC+L++ +P+W H RDTL+VWKR +++ EDE
Sbjct: 195 VIHVGELYGDTLSME--QAPWGRSSSPEFQQQLAAQFHCVLEMQLPNWLHVRDTLSVWKRSQTCAIVFAAEDE 265
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: A0A1Z5K817_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K817_FISSO) HSP 1 Score: 82.4 bits (202), Expect = 1.710e-15 Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 1
Query: 1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKRHAFSVIHYGEDE 216
VIHVGELF DS ++ QAPWGR++S E Q+ LAS +HC+L +P+W H+RD+L+VW+R + + DE
Sbjct: 226 VIHVGELFSDS-SLSMDQAPWGRSSSSEFQQLLASDYHCLLHTHLPNWLHTRDSLSVWRRSRTCALVFAADE 296
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: K3WRM0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRM0_GLOUD) HSP 1 Score: 80.5 bits (197), Expect = 2.300e-15 Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query: 1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKR 180
VIHVGELFG SV + PG PWGRT+++E Q LAS FH +L+VP+PSW S DTLTVWKR
Sbjct: 123 VIHVGELFGQSVCL-PG--PWGRTSAQEFQVHLASVFHKVLQVPLPSWHSSVDTLTVWKR 179
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: A0A6U3Q3X2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q3X2_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 4.020e-15 Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = 1
Query: 1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKR-HAFSVIHYGEDE 216
+IHVGEL+ D+ ++ QAPWGR++S E Q+ LAS+FHCILK + +W H +DT++VWKR S++ G+D+
Sbjct: 274 IIHVGELYTDNT-LSLEQAPWGRSSSPEFQQRLASEFHCILKAKLTNWLHVKDTISVWKRSERCSIVFQGDDD 345
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: A0A1E7FW58_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW58_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 9.530e-15 Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKRHAFSVIHYGEDE 216
VIHVGEL + QAPWGR++S E Q+ LAS+FHCI K+ +P+W H RD+++VWKR +++ +D+
Sbjct: 242 VIHVGELAFLDSSLNLDQAPWGRSSSPEFQQRLASEFHCIAKIQLPNWLHVRDSISVWKRSELCEMYFVDDD 313
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: A0A1Z5KHV0_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KHV0_FISSO) HSP 1 Score: 79.0 bits (193), Expect = 2.880e-14 Identity = 33/72 (45.83%), Postives = 52/72 (72.22%), Query Frame = 1
Query: 1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKRHAFSVIHYGEDE 216
+IHVGELF DS ++ QAPWGR++S E Q+ LAS +HC+L + +P+W H+RD+++VW+R + + +E
Sbjct: 217 IIHVGELFSDS-SLSIDQAPWGRSSSSEFQQLLASDYHCLLHMRLPNWLHTRDSISVWRRSRTCSLVFAAEE 287
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: A0A8K1CRB1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRB1_PYTOL) HSP 1 Score: 79.7 bits (195), Expect = 2.970e-14 Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 1
Query: 1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKRHAFSVI 198
VIHVGELFG +V + PG PWGRT+S E Q LAS +H +L+VP+PSW S DTLTVWKR S++
Sbjct: 235 VIHVGELFGQTVCL-PG--PWGRTSSSEFQIHLASVYHKVLQVPLPSWHSSIDTLTVWKRTKTSIM 297 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig124876.1874.1 >prot_H-elongata_contig124876.1874.1 ID=prot_H-elongata_contig124876.1874.1|Name=mRNA_H-elongata_contig124876.1874.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHback to top mRNA from alignment at H-elongata_contig124876:403..1451+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig124876.1874.1 ID=mRNA_H-elongata_contig124876.1874.1|Name=mRNA_H-elongata_contig124876.1874.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1049bp|location=Sequence derived from alignment at H-elongata_contig124876:403..1451+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig124876:403..1451+ >mRNA_H-elongata_contig124876.1874.1 ID=mRNA_H-elongata_contig124876.1874.1|Name=mRNA_H-elongata_contig124876.1874.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig124876:403..1451+ (Himanthalia elongata Himel1 dioecious)back to top |