mRNA_H-elongata_contig124579.1849.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124579.1849.1
Unique NamemRNA_H-elongata_contig124579.1849.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124579.1849.1 vs. uniprot
Match: D7G574_ECTSI (RME-8_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G574_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 1.620e-67
Identity = 120/161 (74.53%), Postives = 128/161 (79.50%), Query Frame = 1 
Query:    1 VKMTLRVGPTSLDRVDGERLQNKVSYLPLLSVEKVYFFTDDATQMLVGCYGGRRRRYWCAARDSLVRAMEDHLRHIGRTGDQPLPVERVGTWE--------ESRKR--------------ETGIYFRVLALRKSSVVEMDIVTRDHLREFPLDMIFNIVYH 417
            VKMTLRVGPTSLDRVDGERLQ++VS LPLLSVEKVY FTDDATQMLV C+GGRRRRYWCAARDSLVRAMEDHLRH+GRTGDQPLPVERVGTWE        ES K+              E     R+LAL KSSVVEMD+ TRDHLREFPL+MIFNIVYH
Sbjct:  189 VKMTLRVGPTSLDRVDGERLQHRVSSLPLLSVEKVYLFTDDATQMLVDCHGGRRRRYWCAARDSLVRAMEDHLRHLGRTGDQPLPVERVGTWEVDTSTRNPESVKQGYLFEVPVQKWSRTERAFKSRLLALTKSSVVEMDVATRDHLREFPLEMIFNIVYH 349
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124579.1849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G574_ECTSI1.620e-6774.53RME-8_N domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124579contigH-elongata_contig124579:992..1431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue3e-08
Seed eggNOG ortholog653948.CCA19797
KEGG koko:K09533
EggNOG free text desc.regulation of early endosome to recycling endosome transport
EggNOG OGsKOG1789@1,KOG1789@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041,ko03110
Hectar predicted targeting categoryother localisation
Exons2
Model size423
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124579.1849.1prot_H-elongata_contig124579.1849.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124579 992..1425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929734.738174-CDS-H-elongata_contig124579:991..11351622929734.738174-CDS-H-elongata_contig124579:991..1135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124579 992..1135 -
1691679137.469049-CDS-H-elongata_contig124579:991..11351691679137.469049-CDS-H-elongata_contig124579:991..1135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124579 992..1135 -
1622929734.7595654-CDS-H-elongata_contig124579:1152..14251622929734.7595654-CDS-H-elongata_contig124579:1152..1425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124579 1153..1425 -
1691679137.4780574-CDS-H-elongata_contig124579:1152..14251691679137.4780574-CDS-H-elongata_contig124579:1152..1425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124579 1153..1425 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929734.7757876-UTR-H-elongata_contig124579:1425..14311622929734.7757876-UTR-H-elongata_contig124579:1425..1431Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124579 1426..1431 -
1691679137.4862385-UTR-H-elongata_contig124579:1425..14311691679137.4862385-UTR-H-elongata_contig124579:1425..1431Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124579 1426..1431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124579.1849.1

>prot_H-elongata_contig124579.1849.1 ID=prot_H-elongata_contig124579.1849.1|Name=mRNA_H-elongata_contig124579.1849.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MTLRVGPTSLDRVDGERLQNKVSYLPLLSVEKVYFFTDDATQMLVGCYGG
RRRRYWCAARDSLVRAMEDHLRHIGRTGDQPLPVERVGTWEESRKRETGI
YFRVLALRKSSVVEMDIVTRDHLREFPLDMIFNIVYHPT
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mRNA from alignment at H-elongata_contig124579:992..1431-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124579.1849.1 ID=mRNA_H-elongata_contig124579.1849.1|Name=mRNA_H-elongata_contig124579.1849.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=440bp|location=Sequence derived from alignment at H-elongata_contig124579:992..1431- (Himanthalia elongata Himel1 dioecious)
GTTAAAATGACGTTGCGTGTTGGCCCAACTTCGCTCGACCGCGTCGACGG
AGAAAGACTGCAAAACAAAGTGTCGTATCTCCCTCTCCTGAGCGTTGAAA
AGGTGTACTTTTTCACCGATGATGCCACACAGATGCTTGTGGGCTGCTAC
GGGGGTCGCCGGAGAAGATACTGGTGTGCTGCGCGTGACTCACTTGTGCG
TGCCATGGAAGACCACCTAAGGCACATTGGAAGAACTGGGGATCAACCCC
TACCAGTGGAGCGTGTTGGTACATGGGAGGTGGATACATCAACTAGGAAT
CCCGAAAGCGTGAAACAGGTATATATTTTCGTGTGTTGGCTCTCAGGAAG
TCCTCGGTGGTCGAGATGGACATCGTGACTAGGGATCACTTGAGGGAATT
TCCTCTGGACATGATCTTTAACATTGTCTACCACCCCACC
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Coding sequence (CDS) from alignment at H-elongata_contig124579:992..1431-

>mRNA_H-elongata_contig124579.1849.1 ID=mRNA_H-elongata_contig124579.1849.1|Name=mRNA_H-elongata_contig124579.1849.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig124579:992..1431- (Himanthalia elongata Himel1 dioecious)
ATGACGTTGCGTGTTGGCCCAACTTCGCTCGACCGCGTCGACGGAGAAAG
ACTGCAAAACAAAGTGTCGTATCTCCCTCTCCTGAGCGTTGAAAAGGTGT
ACTTTTTCACCGATGATGCCACACAGATGCTTGTGGGCTGCTACGGGGGT
CGCCGGAGAAGATACTGGTGTGCTGCGCGTGACTCACTTGTGCGTGCCAT
GGAAGACCACCTAAGGCACATTGGAAGAACTGGGGATCAACCCCTACCAG
TGGAGCGTGTTGGTACATGGGAGATGACGTTGCGTGTTGGCCCAACTTCG
CTCGACCGCGTCGACGGAGAAAGACTGCAAAACAAAGTGTCGTATCTCCC
TCTCCTGAGCGTTGAAAAGGTGTACTTTTTCACCGATGATGCCACACAGA
TGCTTGTGGGCTGCTACGGGGGTCGCCGGAGAAGATACTGGTGTGCTGCG
CGTGACTCACTTGTGCGTGCCATGGAAGACCACCTAAGGCACATTGGAAG
AACTGGGGATCAACCCCTACCAGTGGAGCGTGTTGGTACATGGGAGGAAT
CCCGAAAGCGTGAAACAGGTATATATTTTCGTGTGTTGGCTCTCAGGAAG
TCCTCGGTGGTCGAGATGGACATCGTGACTAGGGATCACTTGAGGGAATT
TCCTCTGGACATGATCTTTAACATTGTCTACCACCCCACCGAATCCCGAA
AGCGTGAAACAGGTATATATTTTCGTGTGTTGGCTCTCAGGAAGTCCTCG
GTGGTCGAGATGGACATCGTGACTAGGGATCACTTGAGGGAATTTCCTCT
GGACATGATCTTTAACATTGTCTACCACCCCACC
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