mRNA_H-elongata_contig124154.1817.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig124154.1817.1 vs. uniprot
Match: D8LEB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB5_ECTSI) HSP 1 Score: 327 bits (837), Expect = 7.090e-105 Identity = 158/256 (61.72%), Postives = 202/256 (78.91%), Query Frame = 1
Query: 1 MTNAESSLRSKSTGRASECYYFLADFWESTPRAIAQMTLVTVWAALVVTLNNALVLDARLTLDTTAGKAMTTILAFLVVFRTNQSYNRWWEGRILWGKMHSSCIELSQQAAVWIDDPRLARRIMSFAVAFAYTVKKVLRKEPLSAGDLDGIVDPAEVMRMQRLPLQTKPYYCTDVIRQCIKKGLTEHPQSYGAQAVARGIDVPVMQLSTQYADMARVRNTPQPECFRVMLHMFTLIYLMLLPVMSYAALGYWIIPE 768
M+ + S R +S A + + F A FW STP AQMT++ + +ALV TLN+ VLDA L L + G+++ TIL+FL+VFRTNQSYNRWWEGRILWGKMH SC+EL+QQAAVWIDD +LARRIM+ +V FAY VK++LR+E L A +++G++D AEV + LP PYYCT+V+RQCIKKGL + PQ++G QAVARGIDVPV QLS Q+ADM RVRNTPQP+CFRVMLHMFTL+YL++LPV+SY LGY+++ E
Sbjct: 1 MSGGQGSFRVESASHARQLHDFFAVFWRSTPHPFAQMTMLLLSSALVATLNDERVLDAGLHLSSNTGRSLQTILSFLIVFRTNQSYNRWWEGRILWGKMHWSCVELTQQAAVWIDDTQLARRIMNISVTFAYVVKQILRREQLFADEMEGVIDAAEVELINNLPPLVMPYYCTEVMRQCIKKGLADSPQAFGTQAVARGIDVPVSQLSVQFADMERVRNTPQPDCFRVMLHMFTLLYLLVLPVISYDTLGYFVVLE 256
BLAST of mRNA_H-elongata_contig124154.1817.1 vs. uniprot
Match: K9DVG2_9BURK (Uncharacterized protein n=8 Tax=Massilia TaxID=149698 RepID=K9DVG2_9BURK) HSP 1 Score: 88.2 bits (217), Expect = 9.470e-17 Identity = 69/229 (30.13%), Postives = 112/229 (48.91%), Query Frame = 1
Query: 100 IAQMTLVTVWAALVVTLNNALVLDARLTLDTTAGKAMTTILAFLVVFRTNQSYNRWWEGRILWGKMHSSCIELSQQAAVWIDDPRLAR----------RIMSFAVAFAYTVKKVLRKEPLSAGDLDGIV-DPAEVMRMQRLPLQTKPYYCTDVIRQCIKKGLTEHPQSYGAQAVARGIDVPVMQLSTQYADMARVRNTPQPECFRVMLHMFTLIYLMLLPVMSYAALGY 753
I + LV + A +VT ++ + D ++TL T + +A + FR N +Y+R+WEGR LWG++ C L++Q IDDPR A RI+ A+AF + ++ LR +P S ++ D E M R + + D +++CIK+G E +A ID + L+ A R++NTP P + ++LH IY LLP ++G+
Sbjct: 24 ILPVLLVNIAVATLVTWSHGDLWDLKITLTTIPFTLIGLPIAIFLGFRNNSAYDRFWEGRKLWGELVLRCRNLARQTMSLIDDPRPALASNGLQDTRVRIIYRAIAFVHALRDHLRDQPGSPYVATFLLPDEYEDMARARNKPDSLMRHMGDDLQRCIKEGRIE-------ACLAANIDNTLSSLTAAAASCERIKNTPIPFSYTLLLHRTAYIYCFLLPFGLVDSIGF 245
BLAST of mRNA_H-elongata_contig124154.1817.1 vs. uniprot
Match: UPI001E4251E1 (bestrophin family protein n=2 Tax=Massilia TaxID=149698 RepID=UPI001E4251E1) HSP 1 Score: 87.4 bits (215), Expect = 1.560e-16 Identity = 69/231 (29.87%), Postives = 112/231 (48.48%), Query Frame = 1
Query: 91 PRAIAQMTLVTVWAALVVTLNNALVLDARLTLDTTAGKAMTTILAFLVVFRTNQSYNRWWEGRILWGKMHSSCIELSQQAAVWIDDPRLAR----------RIMSFAVAFAYTVKKVLRKEPLSAGDLDGIVDPAEVMRMQRLPLQTKPYYCTDVIRQCIKKGLTEHPQSYGAQAVARGIDVPVMQLSTQYADMARVRNTPQPECFRVMLHMFTLIYLMLLPVMSYAALGY 753
P + + + V A LV L+ +L D ++TL T + LA + FR N +Y+R+WEGR LWG++ L++Q A +DDPR A R++ A AF++ ++ +LR P L+G++ PAE + + P KP Y + + + L E A +A ID + ++ A R+RNTP P + ++LH +Y LLP +G+
Sbjct: 11 PHILPVLVVNVVVATLVTWLHGSLG-DVKITLTTIPFTLIGLPLAIFLGFRNNSAYDRFWEGRKLWGELLLRARNLARQCASLVDDPRPAHIRNGLEDVRVRMVLRAAAFSHALRDLLRNLPPDPA-LEGLLQPAEFAALAQAP--NKPDYLMQQMGHDLARCLKEERI---APCLAVNIDHTLSAMTAAAASCERIRNTPIPFSYTLLLHRTAYLYCFLLPFGLVDTIGF 234
BLAST of mRNA_H-elongata_contig124154.1817.1 vs. uniprot
Match: A0A3L7SMM5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7SMM5_9BACT) HSP 1 Score: 86.3 bits (212), Expect = 4.320e-16 Identity = 61/194 (31.44%), Postives = 94/194 (48.45%), Query Frame = 1
Query: 193 TAGKAMTTILAFLVVFRTNQSYNRWWEGRILWGKMHSSCIELSQQAAVWI-DDPRLARRIMSFAVAFAYTVKKVLRKEPLSAGDLDGI--VDPAEVMRMQRLPLQTKPYYCTDVIRQCIKKGLTEHPQSYGAQAVARGIDVPVMQLSTQYADMARVRNTPQPECFRVMLHMFTLIYLMLLPVMSYAALGYWIIP 765
TA + T L L+VFRTN SY+R+WEGR WG +++ C L++QA +W+ DP+L R ++ + +AF Y + L P L+ + D A+V + LPL + C ++GL + Q VA D + L R+ +TP P + V L ++Y M LP+ G+ IP
Sbjct: 57 TAHSLIGTALGLLLVFRTNSSYDRFWEGRKQWGAINNECRNLARQANIWLASDPKLMREVIRWTIAFPYATMQRLWSLPGLGVRLNDVSPADVAQVEASKHLPLAISRLLTQRLFTAC-QQGLID-----SRQLVA--FDQNLTLLVDYCGACERIHSTPMPFAYAVHLRRVLIVYCMTLPLAFVKDFGWATIP 242
BLAST of mRNA_H-elongata_contig124154.1817.1 vs. uniprot
Match: A0A139AZR5_GONPJ (UPF0187-domain-containing protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AZR5_GONPJ) HSP 1 Score: 85.1 bits (209), Expect = 1.910e-15 Identity = 78/268 (29.10%), Postives = 116/268 (43.28%), Query Frame = 1
Query: 91 PRAIAQMTLVTVWAALVVTLNNALVLDARLTLDTTAGKAMTTILAFLVVFRTNQSYNRWWEGRILWGKMHSSCIELSQQAAVWIDDPRLA------RRIMSFAVAFAYTVKKVLRKEPLSAGDLDGIVDPAEVMR-MQRLPLQTKPYYCTD-----------VIRQCIKKGLTE----HPQSYG---AQAVARGIDVPVM------------------QLSTQYADMARVRNTPQPECFRVMLHMFTLIYLMLLPVMSYAALGYWIIP 765
P+A+ + ++ VW AL LN +A++TL + + FR+NQSY+R+ EGR LWG++ + +S+ + R A ++I+SF VA+AY VK LR E D D AE M + + TKP V RQ G TE HP+ AQA++R + + V Q+ + R+ TP P+ + ++L LIY LP Y LGYW+IP
Sbjct: 44 PQALPSLLILAVWTALFAVLNKQF--NAQITLASXXXXXXXXXXXXXLSFRSNQSYDRFSEGRRLWGQLTAQLRNISRAGVTGLSVTRTAESHKRAQKIISFCVAYAYAVKHYLRAE----FDPSQWADMAEYMEVLDFAAVSTKPKTAAKDLVEMADDSGLVARQIANTGETELVSEHPEKLPFRIAQALSRHLSLCVQDGLATLLPHIQGCENVLAQVVETTGSLERIACTPVPKPYNILLRQMLLIYCFCLPFQLYKDLGYWMIP 305
BLAST of mRNA_H-elongata_contig124154.1817.1 vs. uniprot
Match: A0A7S2N347_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2N347_9EUKA) HSP 1 Score: 81.3 bits (199), Expect = 1.060e-14 Identity = 57/197 (28.93%), Postives = 96/197 (48.73%), Query Frame = 1
Query: 205 AMTTILAFLVVFRTNQSYNRWWEGRILWGKMHSSCIELSQQAAVWIDDPRLARRIMSFAVAFAYTVKKVLRKEPLSAGD-----LDGIVDPAEVMRMQRLPLQTKPYYCTDVIRQCIKKGLT-----EHPQSYGAQAVARGIDVPVMQLSTQYADMARVRNTPQPECFRVMLHMFTLIYLMLLPVMSYAALGYWIIP 765
AM +LAFL+ FR NQ+Y+RWWEGR LWG++ S L+ A D +R++ + FA+ ++ +LR + L + +DG++ P +V + P D IR+ IK ++ H + G + G D+ QL R+R+TP P + +L +F + ++ PV + G+ +P
Sbjct: 4 AMLGLLAFLIGFRMNQAYDRWWEGRKLWGEVIFSARNLASNTASCFTDIERLKRLILHIIVFAWALRSLLRGQKLGDDEEDGAAMDGLLAPEQVAAINLY--DHVPLKLIDDIRKEIKDEISAQLVSNHGRIEGHWDIIVGDDI--RQLLQAMTGCERIRSTPMPFNYLSILRIFVVAWVSTYPVFIVGSFGWVAMP 196
BLAST of mRNA_H-elongata_contig124154.1817.1 vs. uniprot
Match: I0YN93_COCSC (UPF0187-domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YN93_COCSC) HSP 1 Score: 83.2 bits (204), Expect = 1.360e-14 Identity = 57/183 (31.15%), Postives = 91/183 (49.73%), Query Frame = 1
Query: 220 LAFLVVFRTNQSYNRWWEGRILWGKMHSSCIELSQQAAVWI--DDPRLARRIMSFAVAFAYTVKKVLRKEPLSAG--DLDGIVDPAEVMRMQRLPLQTKPYYCTDVIRQCIKKGLTEHPQSYGAQAVARGIDVPVMQLSTQYADMARVRNTPQPECFRVMLHMFTLIYLMLLPVMSYAALGYW 756
L L+ FRTN SY+RWWEGR LW ++S C+++ + A W+ D A +++ + +AF KK LR E AG +L GIV AE+ + P++ +I + + +T A+A G+D + LS R+ TP P + V L F +++ + LP +L +W
Sbjct: 140 LFLLLTFRTNSSYDRWWEGRKLWDGINSKCLDMQRMALGWVAPKDRDSASQLIRYTIAFTVAAKKYLRHE---AGYEELRGIVSDAELHELSSS--HNIPFH---IILRLTE--ITSTASKVLPPALANGLDGVIRGLSQDLNSCMRIFTTPMPFAYIVHLRSFMVLWFLGLPFAFVVSLSWW 312
BLAST of mRNA_H-elongata_contig124154.1817.1 vs. uniprot
Match: K9FGH5_9CYAN (Putative membrane protein n=3 Tax=Leptolyngbyaceae TaxID=1890438 RepID=K9FGH5_9CYAN) HSP 1 Score: 81.6 bits (200), Expect = 2.190e-14 Identity = 58/192 (30.21%), Postives = 96/192 (50.00%), Query Frame = 1
Query: 199 GKAMTTILAFLVVFRTNQSYNRWWEGRILWGKMHSSCIELSQQAAVWIDDPRLAR-RIMSFAVAFAYTVKKVLRKEPLSAGDLDGIVDPAEVMRMQRL--PLQTKPYYCTDVIRQCIKKGLTEHPQSYGAQAVARGIDVPVMQLSTQYADMARVRNTPQPECFRVMLHMFTLIYLMLLPVMSYAALGYWIIP 765
G + +L L+VFRTN SY R+WEGR LWG + ++ L++Q V +D R ++ R + VAFA K+ LR++P A +L+ +V P ++ ++ + P ++ D ++ KG SY QA+ ++ L R+ NTP P + + L ++Y + LP + L W IP
Sbjct: 54 GVVPSIVLGLLLVFRTNASYERFWEGRKLWGNIVNTTRNLARQIWVSVDTSRQSKERALKLLVAFAIATKQHLRQQPC-AHELNHLVTPPQLEKLMGMNSPSLEIAFWLGDYLQVQQLKGRIN---SYQLQAMTSQLN----SLVNSLGGCERILNTPLPLAYSIHLKQLLVMYCLALPFQVVSELNGWTIP 237
BLAST of mRNA_H-elongata_contig124154.1817.1 vs. uniprot
Match: Q31QN2_SYNE7 (Uncharacterized protein n=5 Tax=Synechococcus elongatus TaxID=32046 RepID=Q31QN2_SYNE7) HSP 1 Score: 80.1 bits (196), Expect = 8.830e-14 Identity = 54/192 (28.12%), Postives = 96/192 (50.00%), Query Frame = 1
Query: 217 ILAFLVVFRTNQSYNRWWEGRILWGKMHSSCIELSQQAAVWIDDP-------RLARRIMSFAVAFAYTVKKVLRKEPLSAGDLDGIVDPAEVMRMQRLP--LQTKPYYCTDVIRQCIKKGLTEHPQSYGAQAVARGIDVPVMQLSTQYADMARVRNTPQPECFRVMLHMFTLIYLMLLPVMSYAALGYWIIP 765
+L L+VFRTN +Y R+WEGR +WG + L++ +W++ P + R+ + VA + +K+ LR++PL A +L+ +V PA+ ++ R P + + ++Q +++GL + + + + ID R+RNTP P + V L LIY +P+ +LG W +P
Sbjct: 64 VLGLLLVFRTNTAYERFWEGRRIWGNQINQTRNLAR--LMWVEIPHGDRDAEQQLRQATGWLVALSIVMKQWLRRQPLEAEELNDLVSPADYQKLLRSPHPVLEVALWIDRYLQQQLQRGLAVYQLNEQKRLLNGLIDC--------LGGCERIRNTPMPLAYSVHLKQLMLIYCFTMPLQLVGSLG-WRMP 244
BLAST of mRNA_H-elongata_contig124154.1817.1 vs. uniprot
Match: A0A1H8EKC3_9BURK (Putative membrane protein n=2 Tax=Brachymonas denitrificans TaxID=28220 RepID=A0A1H8EKC3_9BURK) HSP 1 Score: 79.7 bits (195), Expect = 9.710e-14 Identity = 66/214 (30.84%), Postives = 104/214 (48.60%), Query Frame = 1
Query: 121 TVWAALVVTLNNALVLDARLTLDTTAGKAMTTILAFLVVFRTNQSYNRWWEGRILWGKMHSSCIELSQQAAVWIDDPR--LARRIMSFAVAFAYTVKKVLR-KEPLSAGDLDGIVDPAEVMRMQRLPLQTKPYYCTDVIRQCIKKGLTEHPQSYGAQAVARGIDVPVMQLSTQYADMARVRNTPQPECFRVMLHMFTLIYLMLLPVMSYAALGY 753
T+ +++V + V D ++TL TA M LA + FR SY+R+WEGR LWG+M +C L++Q PR R+ + A+AFAY +K LR K+P + DL ++ P + ++ P+ T ++ + + Q VAR +D V LS R+++TP P + ++LH IY LLP +GY
Sbjct: 32 TMLLSVLVNFTHGEVYDHKVTLTPTAFTIMGLTLAIFLGFRNTASYDRFWEGRKLWGEMLITCRNLARQFITLPRSPRGEATRQRVYLAIAFAYALKNQLRGKDPTA--DLTPLLPPELLQKVL-----AAPHRPTAILMELGHASRELGEEGLDPQLVAR-VDHEVGALSHVLGGCERIQSTPIPYTYVLLLHRTVHIYCFLLPFALIDTIGY 237 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124154.1817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig124154.1817.1 >prot_H-elongata_contig124154.1817.1 ID=prot_H-elongata_contig124154.1817.1|Name=mRNA_H-elongata_contig124154.1817.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=263bp MTNAESSLRSKSTGRASECYYFLADFWESTPRAIAQMTLVTVWAALVVTLback to top mRNA from alignment at H-elongata_contig124154:124..1283- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig124154.1817.1 ID=mRNA_H-elongata_contig124154.1817.1|Name=mRNA_H-elongata_contig124154.1817.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1160bp|location=Sequence derived from alignment at H-elongata_contig124154:124..1283- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig124154:124..1283- >mRNA_H-elongata_contig124154.1817.1 ID=mRNA_H-elongata_contig124154.1817.1|Name=mRNA_H-elongata_contig124154.1817.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1578bp|location=Sequence derived from alignment at H-elongata_contig124154:124..1283- (Himanthalia elongata Himel1 dioecious)back to top |