mRNA_H-elongata_contig124117.1813.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: A0A6H5JR39_9PHAE (ATP-dependent DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR39_9PHAE) HSP 1 Score: 157 bits (398), Expect = 7.210e-43 Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 1
Query: 22 RVRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSPQAQRILAEK 279
RV+GN +PFGG+QLVLCGDFFQLPPVGIGRGSTRFCFEA TWDTS+DQSI+LKQVFRQKDP FL ILHEMREGRVS +A+++LA+K
Sbjct: 299 RVKGNGQPFGGIQLVLCGDFFQLPPVGIGRGSTRFCFEARTWDTSIDQSIVLKQVFRQKDPFFLKILHEMREGRVSSEAEQVLADK 384
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: A0A0D2AM31_9PEZI (ATP-dependent DNA helicase PIF1 n=1 Tax=Verruconis gallopava TaxID=253628 RepID=A0A0D2AM31_9PEZI) HSP 1 Score: 106 bits (265), Expect = 7.600e-25 Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 1
Query: 25 VRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSPQA 258
+R N +PFGG+QLV+ GDFFQLPPV G + RF FEA TW TS+D +I L VFRQKDP+F +L+EMREGR+ P++
Sbjct: 770 LRNNGRPFGGIQLVITGDFFQLPPVPEGNRAARFAFEAATWSTSIDHTIALHHVFRQKDPVFAGMLNEMREGRLRPES 847
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: A0A507FMG7_9FUNG (ATP-dependent DNA helicase PIF1 n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FMG7_9FUNG) HSP 1 Score: 105 bits (261), Expect = 2.540e-24 Identity = 46/76 (60.53%), Postives = 61/76 (80.26%), Query Frame = 1
Query: 25 VRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSP 252
VR +P+PFGG+QLV+CGDF QLPPV RG + F FEA +W + + ++ILLK+VFRQKDP+F+ IL+EMR G V+P
Sbjct: 372 VRDSPRPFGGIQLVICGDFMQLPPVS--RGESHFAFEAKSWKSCMSRTILLKEVFRQKDPVFVQILNEMRNGLVTP 445
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: C5FMN5_ARTOC (ATP-dependent DNA helicase PIF1 n=1 Tax=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) TaxID=554155 RepID=C5FMN5_ARTOC) HSP 1 Score: 104 bits (260), Expect = 3.540e-24 Identity = 50/86 (58.14%), Postives = 62/86 (72.09%), Query Frame = 1
Query: 1 KSPFLRCRVRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSPQA 258
K L ++RGN +PFGG+QLV GDFFQLPPV G +F F A TW+TS+ +ILL QVFRQKDP F ++L+EMR GR+SP A
Sbjct: 377 KLEELARKIRGNGRPFGGIQLVTTGDFFQLPPVPEGGKEAKFAFAAATWNTSIQHTILLTQVFRQKDPDFANMLNEMRLGRLSPSA 462
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: A0A5N5DV80_9PEZI (ATP-dependent DNA helicase n=1 Tax=Lasiodiplodia theobromae TaxID=45133 RepID=A0A5N5DV80_9PEZI) HSP 1 Score: 103 bits (258), Expect = 4.270e-24 Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 1
Query: 25 VRGNPKPFGGVQLVLCGDFFQLPPV--GIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSP 252
VR N KPFGG+QLVL GDFFQLPPV G GS RFCFEA +W T+++ +I L Q++RQKDP F +L+EMREG V+P
Sbjct: 110 VRRNNKPFGGIQLVLTGDFFQLPPVLEGPDDGSPRFCFEAESWKTAIEHTIGLTQIYRQKDPAFAGMLNEMREGLVTP 187
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: UPI000711D652 (ATP-dependent DNA helicase n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711D652) HSP 1 Score: 104 bits (259), Expect = 4.880e-24 Identity = 43/84 (51.19%), Postives = 62/84 (73.81%), Query Frame = 1
Query: 25 VRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSPQAQRILAE 276
+RGN PFGG+Q+VLCGDFFQLPPVG+GR +FCFE+ W+ +++ +++ VFRQKD +L E+R GR+SPQ+ + + E
Sbjct: 210 IRGNDYPFGGIQIVLCGDFFQLPPVGLGRNGVQFCFESRWWNIVVEKVLVMTTVFRQKDMQLQQLLREIRYGRLSPQSMKTMKE 293
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: E4V3W1_ARTGP (ATP-dependent DNA helicase PIF1 n=1 Tax=Arthroderma gypseum (strain ATCC MYA-4604 / CBS 118893) TaxID=535722 RepID=E4V3W1_ARTGP) HSP 1 Score: 103 bits (256), Expect = 1.230e-23 Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 1 KSPFLRCRVRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSPQA 258
K L ++R N +PFGG+QLV GDFFQLPPV G +F F A TW+TS+ +ILL QVFRQKDP F ++L+EMR GR+SP A
Sbjct: 376 KLEELARKIRNNGRPFGGIQLVTTGDFFQLPPVPEGGKEAKFAFAAGTWNTSIQHTILLTQVFRQKDPDFANMLNEMRLGRLSPSA 461
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: A0A0G2G6N1_9EURO (ATP-dependent DNA helicase PIF1 n=1 Tax=Phaeomoniella chlamydospora TaxID=158046 RepID=A0A0G2G6N1_9EURO) HSP 1 Score: 102 bits (255), Expect = 1.670e-23 Identity = 43/78 (55.13%), Postives = 61/78 (78.21%), Query Frame = 1
Query: 25 VRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSPQA 258
++ N +PFGG+Q+V+ GDFFQLPPV + RFCF+A TW T++ +ILL VFRQKDP+F S+L+EMR G+++PQ+
Sbjct: 365 IKNNGRPFGGIQVVVTGDFFQLPPVQESNKAVRFCFDAQTWPTTIQHTILLTHVFRQKDPVFASMLNEMRLGKLTPQS 442
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: A0A7S0Q3F8_9EUKA (ATP-dependent DNA helicase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q3F8_9EUKA) HSP 1 Score: 95.5 bits (236), Expect = 1.780e-23 Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 1
Query: 25 VRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSPQAQRIL 270
VR N KPFGG+QLVLCGDFFQLPPV G S +F FEA W+ + + L QVFRQ DP F+ L ++R GR P +L
Sbjct: 25 VRNNQKPFGGLQLVLCGDFFQLPPVAKGGASYKFAFEAKAWNNCVTTTFELNQVFRQSDPEFIGALQQIRLGRCPPHVAALL 106
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: A0A1B9IG44_9TREE (ATP-dependent DNA helicase PIF1 n=2 Tax=Kwoniella mangrovensis TaxID=463800 RepID=A0A1B9IG44_9TREE) HSP 1 Score: 102 bits (253), Expect = 3.100e-23 Identity = 42/80 (52.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query: 25 VRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSPQAQR 264
+R NPKP+GG+Q+V+ GDFFQLPPV G +FCFEA+ W+ ++ S+ L +VFRQKDP F+ +L+EMR G+++PQ+ +
Sbjct: 375 IRKNPKPWGGIQIVVTGDFFQLPPVTKGNSMPKFCFEADMWNETIHMSVNLSKVFRQKDPRFIDMLNEMRFGKLTPQSNQ 454 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig124117.1813.1 >prot_H-elongata_contig124117.1813.1 ID=prot_H-elongata_contig124117.1813.1|Name=mRNA_H-elongata_contig124117.1813.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp KSPFLRCRVRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDback to top mRNA from alignment at H-elongata_contig124117:823..1788- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig124117.1813.1 ID=mRNA_H-elongata_contig124117.1813.1|Name=mRNA_H-elongata_contig124117.1813.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=966bp|location=Sequence derived from alignment at H-elongata_contig124117:823..1788- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig124117:823..1788- >mRNA_H-elongata_contig124117.1813.1 ID=mRNA_H-elongata_contig124117.1813.1|Name=mRNA_H-elongata_contig124117.1813.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig124117:823..1788- (Himanthalia elongata Himel1 dioecious)back to top |