mRNA_H-elongata_contig123627.1782.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123627.1782.1
Unique NamemRNA_H-elongata_contig123627.1782.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig123627.1782.1 vs. uniprot
Match: A0A6H5KCD9_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD9_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 5.640e-24
Identity = 55/71 (77.46%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:   85 QAAGILFAKMGRGQVERDTLTKVGHLVEALQMRDIKEANTIQQGLADSAWQNHKDWLKGLKYLTTLVSRRL 297
            +A GILF KMGRGQ+E++TL KVGHLVE+LQ RDIK A  +QQGLA+SAW +HKDWLKGLKYLTTLVSRRL
Sbjct: 1217 KAVGILFGKMGRGQLEQETLAKVGHLVESLQARDIKRAGAVQQGLANSAWASHKDWLKGLKYLTTLVSRRL 1287
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BLAST of mRNA_H-elongata_contig123627.1782.1 vs. uniprot
Match: D8LBR5_ECTSI (Vesicle coat complex COPII, subunit SEC31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR5_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.060e-23
Identity = 55/71 (77.46%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:   85 QAAGILFAKMGRGQVERDTLTKVGHLVEALQMRDIKEANTIQQGLADSAWQNHKDWLKGLKYLTTLVSRRL 297
            +A GILF KMGRGQVE++TL KVG LVE+LQ RDIK A  +QQGLA+SAW +HKDWLKGLKYLTTLVSRRL
Sbjct:  871 KAVGILFGKMGRGQVEQETLAKVGQLVESLQARDIKRAGAVQQGLANSAWASHKDWLKGLKYLTTLVSRRL 941
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BLAST of mRNA_H-elongata_contig123627.1782.1 vs. uniprot
Match: A0A7S1ZFT1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZFT1_TRICV)

HSP 1 Score: 71.6 bits (174), Expect = 7.180e-10
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:   85 QAAGILFAKMGRGQVERDTLTKVGHLVEALQMRDIKEANTIQQGLADSAWQNHKDWLKGLKYLTTLVSRRL 297
            + AGI   K+ RGQ++  T  + G LV ALQ RD + A   Q  L +S W++HKDWLKG+K+L  L  ++L
Sbjct:  295 KGAGIFMKKLSRGQIDPTTAGQTGQLVLALQGRDYRSAGAAQSALVNSVWRDHKDWLKGMKFLIQLAGKKL 365
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BLAST of mRNA_H-elongata_contig123627.1782.1 vs. uniprot
Match: A0A7S0C0D8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C0D8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.030e-9
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:   85 QAAGILFAKMGRGQVERDTLTKVGHLVEALQMRDIKEANTIQQGLADSAWQNHKDWLKGLKYLTTLVSRRL 297
            +   IL  K+ RG ++ D + KV  LV A + R+   A  IQ+ L DS W +HKDWLKGLK+L  L  ++L
Sbjct:   68 KGVAILIKKLSRGAIDPDVVAKVQQLVVAAESRNYVAAGGIQKSLVDSVWSDHKDWLKGLKFLIQLAMKKL 138
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BLAST of mRNA_H-elongata_contig123627.1782.1 vs. uniprot
Match: K0S465_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S465_THAOC)

HSP 1 Score: 64.7 bits (156), Expect = 3.230e-8
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:   85 QAAGILFAKMGRGQVERDTLTKVGHLVEALQMRDIKEANTIQQGLADSAWQNHKDWLKGLKYLTTLVSRR 294
            ++A I    +  G+V+ D   KVG +V +LQ RD   A++I  GL  + W++HKDWLKGLK+L  L  ++
Sbjct:  150 KSAAIFIKTLAMGRVDADVADKVGSVVRSLQGRDYATASSIVTGLVSNHWKDHKDWLKGLKFLVQLAGKK 219
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BLAST of mRNA_H-elongata_contig123627.1782.1 vs. uniprot
Match: A0A7S4VZF3_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VZF3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 6.720e-7
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:   85 QAAGILFAKMGRGQVERDTLTKVGHLVEALQMRDIKEANTIQQGLADSAWQNHKDWLKGLKYLTTLVSRRL 297
            +   IL  K+ RG ++ +   KV  +V A+Q RD   A  IQ+ L +S W+ HKDWL+G+K+L    S+R+
Sbjct:  981 KGVAILLKKLARGDIDSEIAPKVMTMVTAMQNRDYGSAAAIQKALVNSDWKEHKDWLRGIKFLIQFASKRI 1051
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BLAST of mRNA_H-elongata_contig123627.1782.1 vs. uniprot
Match: A0A7S2QVW0_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVW0_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.370e-5
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:   97 ILFAKMGR-GQVERDTLTKVGHLVEALQMRDIKEANTIQQGLADSAWQNHKDWLKGLKYLTTLVSRRL 297
            IL+ K+     +++DT TK+  LV ALQ RD   A ++   LA++ W+ HKD+LKG+KYL  L  ++L
Sbjct:  253 ILYVKLATPNAIDQDTGTKLQTLVAALQNRDYATAGSMSTVLANTVWKQHKDFLKGIKYLIQLAGKKL 320
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BLAST of mRNA_H-elongata_contig123627.1782.1 vs. uniprot
Match: A0A482RQQ0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RQQ0_9ARCH)

HSP 1 Score: 52.8 bits (125), Expect = 2.780e-5
Identity = 24/62 (38.71%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:  109 KMGRGQVERDTLTKVGHLVEALQMRDIKEANTIQQGLADSAWQNHKDWLKGLKYLTTLVSRR 294
            K+   +V+   L K+G  +E +  R+   A+ +Q  LA++AW  HK+W+KGLK L  L SR+
Sbjct:   25 KIRANEVDGGVLAKLGVFMEHMANRNFPGASAVQTDLANTAWSEHKEWVKGLKNLIQLASRK 86
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BLAST of mRNA_H-elongata_contig123627.1782.1 vs. uniprot
Match: A0A7R9WWV0_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWV0_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.750e-5
Identity = 24/70 (34.29%), Postives = 38/70 (54.29%), Query Frame = 1 
Query:   85 QAAGILFAKMGRGQVERDTLTKVGHLVEALQMRDIKEANTIQQGLADSAWQNHKDWLKGLKYLTTLVSRR 294
            +   +   ++ RG V  D   K+  +   +Q  D K A  IQ GL ++ W+ HKDWLKG+K L  L +++
Sbjct:  133 KGVAVFLKRLARGDVPEDVAGKMMTMTTTIQTYDWKNAQAIQTGLVNTDWKEHKDWLKGIKALLQLSTKK 202
[Close]
BLAST of mRNA_H-elongata_contig123627.1782.1 vs. uniprot
Match: A0A7S3PXW7_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXW7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.670e-5
Identity = 26/69 (37.68%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:   85 QAAGILFAKMGRGQVERDTLTKVGHLVEALQMRDIKEANTIQQGLADSAWQNHKDWLKGLKYLTTLVSR 291
            +AA I   ++ +  V  D   KVG +V AL+  D   A  +   L ++ W+ HKDWLKGLK+L  + S+
Sbjct: 1006 KAAAIFSKRLAQVDVPTDVADKVGQIVAALKNNDFLTATGVHTSLVNTVWKQHKDWLKGLKFLIQMTSK 1074
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123627.1782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KCD9_9PHAE5.640e-2477.46WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LBR5_ECTSI2.060e-2377.46Vesicle coat complex COPII, subunit SEC31 n=1 Tax=... [more]
A0A7S1ZFT1_TRICV7.180e-1045.07Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S0C0D8_9STRA1.030e-943.66Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
K0S465_THAOC3.230e-841.43Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S4VZF3_9STRA6.720e-739.44Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S2QVW0_9STRA2.370e-542.65Hypothetical protein n=1 Tax=Triparma pacifica Tax... [more]
A0A482RQQ0_9ARCH2.780e-538.71Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7R9WWV0_9STRA4.750e-534.29Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S3PXW7_9STRA5.670e-537.68Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123627contigH-elongata_contig123627:160..1847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2e-20
Seed eggNOG ortholog2880.D8LBR5
KEGG koko:K14005
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
GOsGO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016192,GO:0033036,GO:0034613,GO:0042886,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsKOG0307@1,KOG0307@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size1476
Cds size189
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123627.1782.1prot_H-elongata_contig123627.1782.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123627 271..671 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929727.8981328-UTR-H-elongata_contig123627:159..2701622929727.8981328-UTR-H-elongata_contig123627:159..270Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig123627 160..270 +
1691679135.0432522-UTR-H-elongata_contig123627:159..2701691679135.0432522-UTR-H-elongata_contig123627:159..270Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig123627 160..270 +
1622929727.9594193-UTR-H-elongata_contig123627:671..18471622929727.9594193-UTR-H-elongata_contig123627:671..1847Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig123627 672..1847 +
1691679135.07276-UTR-H-elongata_contig123627:671..18471691679135.07276-UTR-H-elongata_contig123627:671..1847Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig123627 672..1847 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929727.9150321-CDS-H-elongata_contig123627:270..3361622929727.9150321-CDS-H-elongata_contig123627:270..336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123627 271..336 +
1691679135.056707-CDS-H-elongata_contig123627:270..3361691679135.056707-CDS-H-elongata_contig123627:270..336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123627 271..336 +
1622929727.937598-CDS-H-elongata_contig123627:548..6711622929727.937598-CDS-H-elongata_contig123627:548..671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123627 549..671 +
1691679135.0648372-CDS-H-elongata_contig123627:548..6711691679135.0648372-CDS-H-elongata_contig123627:548..671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123627 549..671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123627.1782.1

>prot_H-elongata_contig123627.1782.1 ID=prot_H-elongata_contig123627.1782.1|Name=mRNA_H-elongata_contig123627.1782.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MGRGQVERDTLTKVGHLVEALQMRDIKEANTIQQGLADSAWQNHKDWLKG
LKYLTTLVSRRL*
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mRNA from alignment at H-elongata_contig123627:160..1847+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123627.1782.1 ID=mRNA_H-elongata_contig123627.1782.1|Name=mRNA_H-elongata_contig123627.1782.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1688bp|location=Sequence derived from alignment at H-elongata_contig123627:160..1847+ (Himanthalia elongata Himel1 dioecious)
ATGCTTCCGGGGTTTTGATCTCGCGACGCGCAAGGCGGTGCTGTGATTTT
TATTTTCTAATTTTCCCGCCCTACCGTGTTTTGACAGGCCGCTGGCATTC
TCTTTGCCAAGATGGGACGCGGCCAAGTGGAACGAGACACTCTCACCAAG
GTTGGCCACCTGGTGGAGGCACTTCAGGCGAGGATGAGGATGAGGAAGTC
GACCTCCTAAAGCCTTGCTACTTTATGTTCACTTGTATATATATATATAG
GTTCGTTTGTATCTTGTGTCTGTGTTTGTATGTTTCGGCGTTGACGACCC
CTTGTCATCTGCCCCTCTCGTTCTTCGCTGTCGTTGACCGTTACACCCGT
CACTGGTCGCCTCTTTCTATTTCTATCTCTCTGTTGAAGATGCGCGATAT
CAAGGAGGCCAACACTATCCAGCAAGGGCTGGCTGACTCAGCGTGGCAAA
ACCACAAGGATTGGCTGAAAGGACTCAAGTATCTTACCACCCTAGTGTCG
CGGAGGCTCTGAGGATCTCTTTCTGTCTCTCTTTACCTTTGTATGTGTCT
CTCTCTCTCTCTCTCGATCGATCGATCTTGGGACAGTATTATTAGTTTCA
ATCTACGGCAGCTGCTCTTTGCGAAACGTGTCACGAAAAAAGAAAATGTT
TTGATAATATTAGGGATAATAGTAAGAATAATAATTATAGTAATGCTGCA
AGAATTTGGCACGGGTACCGTGTGATGAAGGGTTGCCCCCCATCGCTTAC
CGTTTAGTGGCCTACGGCTACGGTTACCATCGCTCTACCTAGGCTCGCCT
CGGCTTTCATTCTTTCTCACAGTACAGTACTCGCGACGCGAAAGGGAGGA
GGTTAGTTAAATGGTTAATGGTTACCGCGCTTTTTATTTTGATGGTACAG
TCAGTAGTTACGGAAGGGAGCAGGGGGGGGGGACAAAGGCGCACCCGGAT
TGTTGTGTTCTTTGAAAACTGAGGGCGTTTTTTTATATCTCGTCTGTCTT
GCGTGTCTTTTCATCTGATTGTCTCTCTCTGTTTTTGTCACTTGTTCCCG
ATTATTAGTTTGGAATGGTTGTTTTTTTGCTGGATGATACATGATATATT
GTGAATGAAGGAAAGGTGTGATGGTCACTATTGGGGCTATTGGAAGGATG
AAGAAGTATTTATAAAAGTGGCGAATCTCGACACCTAAATATGTCTATAG
GATATTTCTATCTCTAAATATATAATACTAGTAACTACCAGGGATCTATT
ATATTACTACTAACTAGTATTATTTATTTTTTTCGGAGGAGGAATTTCTG
GCAATACTTTTGCGGACAAGCCGCTAGGGTAGGCGGGGATCCGCCGATCG
GTAGGTATGGACATCGTGTACTGTAATAGCTCTAATGCATAGGCAGCTCT
AATGCATAGGGCGAAAGAGGGAAATCAGTACACTATGTCCAAACCGCCCC
CCCCTTGTAACAGAAATATCTTCCTGCTCCTTCTGCTAACGACAAAGACA
CGTGCTATAATAGTACTGTTAATAGTACTGTTGGTACGATATATTGCTAC
TGCTGCTGCTTTAGTTCAAATGAGTGCAGCAGTGTAAAGCATCTTTATTG
TGTACTCTAGGTGCCTTCCACGGTTAGGCATCAATGATATCTAGGAGGGG
AGGGGGTGGTTATGAAGCATCCCCGGCTAAGGTCTCAC
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Coding sequence (CDS) from alignment at H-elongata_contig123627:160..1847+

>mRNA_H-elongata_contig123627.1782.1 ID=mRNA_H-elongata_contig123627.1782.1|Name=mRNA_H-elongata_contig123627.1782.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig123627:160..1847+ (Himanthalia elongata Himel1 dioecious)
ATGGGACGCGGCCAAGTGGAACGAGACACTCTCACCAAGGTTGGCCACCT
GGTGGAGGCACTTCAGATGGGACGCGGCCAAGTGGAACGAGACACTCTCA
CCAAGGTTGGCCACCTGGTGGAGGCACTTCAGATGCGCGATATCAAGGAG
GCCAACACTATCCAGCAAGGGCTGGCTGACTCAGCGTGGCAAAACCACAA
GGATTGGCTGAAAGGACTCAAGTATCTTACCACCCTAGTGTCGCGGAGGC
TCTGAATGCGCGATATCAAGGAGGCCAACACTATCCAGCAAGGGCTGGCT
GACTCAGCGTGGCAAAACCACAAGGATTGGCTGAAAGGACTCAAGTATCT
TACCACCCTAGTGTCGCGGAGGCTCTGA
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