mRNA_H-elongata_contig122822.1737.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122822.1737.1
Unique NamemRNA_H-elongata_contig122822.1737.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122822.1737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122822contigH-elongata_contig122822:880..1182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929723.1939151-CDS-H-elongata_contig122822:879..11821622929723.1939151-CDS-H-elongata_contig122822:879..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122822 880..1182 +
1691679133.1770194-CDS-H-elongata_contig122822:879..11821691679133.1770194-CDS-H-elongata_contig122822:879..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122822 880..1182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122822.1737.1prot_H-elongata_contig122822.1737.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122822 880..1182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122822.1737.1

>prot_H-elongata_contig122822.1737.1 ID=prot_H-elongata_contig122822.1737.1|Name=mRNA_H-elongata_contig122822.1737.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
DTRTPNTRRVLGHTLTRIGFLRGREFPSGIRVPVQRVPTLVRIYSDRGVL
KPFPCDITNLYQGQLLYNVTDVQVNRSSSPLVEPLISNLHSSLINENMSF
*
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mRNA from alignment at H-elongata_contig122822:880..1182+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122822.1737.1 ID=mRNA_H-elongata_contig122822.1737.1|Name=mRNA_H-elongata_contig122822.1737.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig122822:880..1182+ (Himanthalia elongata Himel1 dioecious)
GATACCCGGACCCCAAATACCCGCCGGGTATTGGGTCATACCCTTACCCG
AATCGGGTTTTTAAGAGGCCGGGAATTCCCGTCGGGTATCCGGGTACCCG
TTCAGCGGGTACCAACCCTAGTACGTATATATTCAGACCGGGGAGTATTA
AAACCATTCCCCTGTGATATAACCAATTTATACCAAGGTCAACTCTTATA
TAATGTAACGGATGTACAAGTAAATCGATCATCGTCCCCGCTTGTTGAAC
CATTAATCTCTAATCTCCATAGTTCATTAATCAATGAAAACATGTCTTTC
TAG
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Coding sequence (CDS) from alignment at H-elongata_contig122822:880..1182+

>mRNA_H-elongata_contig122822.1737.1 ID=mRNA_H-elongata_contig122822.1737.1|Name=mRNA_H-elongata_contig122822.1737.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig122822:880..1182+ (Himanthalia elongata Himel1 dioecious)
GATACCCGGACCCCAAATACCCGCCGGGTATTGGGTCATACCCTTACCCG
AATCGGGTTTTTAAGAGGCCGGGAATTCCCGTCGGGTATCCGGGTACCCG
TTCAGCGGGTACCAACCCTAGTACGTATATATTCAGACCGGGGAGTATTA
AAACCATTCCCCTGTGATATAACCAATTTATACCAAGGTCAACTCTTATA
TAATGTAACGGATGTACAAGTAAATCGATCATCGTCCCCGCTTGTTGAAC
CATTAATCTCTAATCTCCATAGTTCATTAATCAATGAAAACATGTCTTTC
TAGGATACCCGGACCCCAAATACCCGCCGGGTATTGGGTCATACCCTTAC
CCGAATCGGGTTTTTAAGAGGCCGGGAATTCCCGTCGGGTATCCGGGTAC
CCGTTCAGCGGGTACCAACCCTAGTACGTATATATTCAGACCGGGGAGTA
TTAAAACCATTCCCCTGTGATATAACCAATTTATACCAAGGTCAACTCTT
ATATAATGTAACGGATGTACAAGTAAATCGATCATCGTCCCCGCTTGTTG
AACCATTAATCTCTAATCTCCATAGTTCATTAATCAATGAAAACATGTCT
TTCTAG
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