mRNA_H-elongata_contig122628.1725.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122628.1725.1
Unique NamemRNA_H-elongata_contig122628.1725.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122628.1725.1 vs. uniprot
Match: D8LB99_ECTSI (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB99_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.570e-10
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    1 IHDTLDLHGRCLCLGVLIRQRGIHVVAIDFPGHGRSGPLSNDANYISLNYTKYIIEAAR 177
            +H  LD  G    LG  + + G  VVAIDFPGHGRS  +S DA Y  L+Y +Y+IEAAR
Sbjct:   43 LHGYLDNSGSFDLLGPALAKEGFEVVAIDFPGHGRSDHMSKDAWYPILDYPEYVIEAAR 101
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BLAST of mRNA_H-elongata_contig122628.1725.1 vs. uniprot
Match: A0A1Q9DI75_SYMMI (AB hydrolase-1 domain-containing protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DI75_SYMMI)

HSP 1 Score: 48.5 bits (114), Expect = 5.570e-5
Identity = 25/59 (42.37%), Postives = 32/59 (54.24%), Query Frame = 1 
Query:    1 IHDTLDLHGRCLCLGVLIRQRGIHVVAIDFPGHGRSGPLSNDANYISLNYTKYIIEAAR 177
            +H  LD     L +   +   G  VVA+D+PGHGRSG  S DA Y + +   Y  EAAR
Sbjct:  782 LHGWLDNSNSFLQIAPHLASLGFLVVAMDWPGHGRSGHRSRDATYAATDLPWYAAEAAR 840
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122628.1725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB99_ECTSI1.570e-1052.54AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
A0A1Q9DI75_SYMMI5.570e-542.37AB hydrolase-1 domain-containing protein n=1 Tax=S... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122628contigH-elongata_contig122628:927..1106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue2.2e-08
Seed eggNOG ortholog2880.D8LB99
EggNOG free text desc.regulation of endocannabinoid signaling pathway
EggNOG OGsCOG0596@1,KOG1454@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.6383862-CDS-H-elongata_contig122628:926..11061622929721.6383862-CDS-H-elongata_contig122628:926..1106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122628 927..1106 +
1691679132.4935694-CDS-H-elongata_contig122628:926..11061691679132.4935694-CDS-H-elongata_contig122628:926..1106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122628 927..1106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122628.1725.1prot_H-elongata_contig122628.1725.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122628 927..1106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122628.1725.1

>prot_H-elongata_contig122628.1725.1 ID=prot_H-elongata_contig122628.1725.1|Name=mRNA_H-elongata_contig122628.1725.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
IHDTLDLHGRCLCLGVLIRQRGIHVVAIDFPGHGRSGPLSNDANYISLNY
TKYIIEAAR*
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mRNA from alignment at H-elongata_contig122628:927..1106+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122628.1725.1 ID=mRNA_H-elongata_contig122628.1725.1|Name=mRNA_H-elongata_contig122628.1725.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig122628:927..1106+ (Himanthalia elongata Himel1 dioecious)
ATTCATGATACCCTAGACCTACACGGGCGCTGTTTATGCTTGGGGGTTTT
AATACGACAGAGAGGGATTCACGTCGTGGCGATCGACTTCCCGGGGCACG
GAAGATCAGGGCCCTTGAGCAATGATGCCAATTACATATCGCTCAACTAC
ACGAAGTACATCATCGAGGCTGCCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig122628:927..1106+

>mRNA_H-elongata_contig122628.1725.1 ID=mRNA_H-elongata_contig122628.1725.1|Name=mRNA_H-elongata_contig122628.1725.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig122628:927..1106+ (Himanthalia elongata Himel1 dioecious)
ATTCATGATACCCTAGACCTACACGGGCGCTGTTTATGCTTGGGGGTTTT
AATACGACAGAGAGGGATTCACGTCGTGGCGATCGACTTCCCGGGGCACG
GAAGATCAGGGCCCTTGAGCAATGATGCCAATTACATATCGCTCAACTAC
ACGAAGTACATCATCGAGGCTGCCAGGTGAATTCATGATACCCTAGACCT
ACACGGGCGCTGTTTATGCTTGGGGGTTTTAATACGACAGAGAGGGATTC
ACGTCGTGGCGATCGACTTCCCGGGGCACGGAAGATCAGGGCCCTTGAGC
AATGATGCCAATTACATATCGCTCAACTACACGAAGTACATCATCGAGGC
TGCCAGGTGA
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