mRNA_H-elongata_contig122603.1723.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122603.1723.1
Unique NamemRNA_H-elongata_contig122603.1723.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122603.1723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122603contigH-elongata_contig122603:787..1680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size873
Cds size873
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.3645346-CDS-H-elongata_contig122603:786..11171622929721.3645346-CDS-H-elongata_contig122603:786..1117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122603 787..1117 +
1691679132.370413-CDS-H-elongata_contig122603:786..11171691679132.370413-CDS-H-elongata_contig122603:786..1117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122603 787..1117 +
1622929721.3880684-CDS-H-elongata_contig122603:1138..16801622929721.3880684-CDS-H-elongata_contig122603:1138..1680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122603 1139..1680 +
1691679132.3785615-CDS-H-elongata_contig122603:1138..16801691679132.3785615-CDS-H-elongata_contig122603:1138..1680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122603 1139..1680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122603.1723.1prot_H-elongata_contig122603.1723.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122603 787..1680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122603.1723.1

>prot_H-elongata_contig122603.1723.1 ID=prot_H-elongata_contig122603.1723.1|Name=mRNA_H-elongata_contig122603.1723.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=291bp
MGAPPKGWGLWWRRRRRWPGDGEDVLSVGGNCLTSCCVARLSSTEGGRPL
GLLYGGTLLADASNSRRDELSESVEPSATVTTEAVAVEVVAAMGARSEEE
VDAVPQVEEGYGIASNLTVRWASVVNTALAETTRVGIAKRQQQGEKDLER
SREGTAPAARRKWSGKDWLGIGASWRAGEGWTGPREDQPLAKTASPTSID
NTVASPRPTAETESSLADRAVVIRRGRGKEVFLPVNATTSSSSFIMVGGV
EERVVGSFEEATEQPGWRVWRGPIRRRGTVELEREELQEDE
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mRNA from alignment at H-elongata_contig122603:787..1680+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122603.1723.1 ID=mRNA_H-elongata_contig122603.1723.1|Name=mRNA_H-elongata_contig122603.1723.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=894bp|location=Sequence derived from alignment at H-elongata_contig122603:787..1680+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGCGCCGCCAAAGGGGTGGGGGCTGTGGTGGCGGCGAAGACGACG
GTGGCCAGGGGATGGAGAAGACGTTTTGAGCGTTGGCGGGAACTGCTTGA
CTTCGTGCTGCGTGGCACGGTTATCCAGCACGGAAGGGGGGAGACCGCTA
GGGCTTCTGTACGGTGGGACGCTGTTAGCTGACGCCAGCAACTCGCGAAG
GGACGAATTATCCGAGAGCGTGGAGCCTTCCGCGACGGTGACAACGGAAG
CGGTGGCGGTGGAAGTAGTGGCGGCGATGGGGGCGAGAAGTGAAGAGGAG
GTTGACGCCGTCCCCCAGGTCGAAGAGGGTTGCGAGGGGAGCTTGCCGAT
AGACGGTATCGCGTCGAACCTGACCGTGCGCTGGGCGAGCGTGGTCAACA
CGGCGCTCGCGGAAACAACGCGGGTGGGGATAGCAAAGCGACAGCAGCAG
GGCGAGAAGGATTTGGAAAGATCGCGAGAGGGTACGGCCCCGGCCGCCCG
TCGCAAATGGTCTGGAAAGGATTGGCTGGGCATCGGCGCCAGTTGGAGGG
CCGGGGAGGGCTGGACGGGACCGCGGGAAGACCAACCCCTGGCGAAGACG
GCGTCGCCGACATCCATCGACAACACCGTCGCTTCGCCGCGACCAACGGC
AGAAACTGAGAGCAGTCTCGCAGACAGGGCGGTGGTCATACGCCGAGGCC
GCGGCAAGGAAGTTTTCTTGCCAGTGAACGCGACGACTTCATCCTCGTCC
TTTATTATGGTCGGTGGGGTCGAGGAACGGGTGGTAGGAAGCTTCGAAGA
AGCGACGGAACAGCCAGGCTGGCGCGTCTGGCGAGGCCCGATCAGGAGAA
GGGGAACAGTGGAGCTTGAAAGAGAGGAGCTTCAGGAAGACGAG
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Coding sequence (CDS) from alignment at H-elongata_contig122603:787..1680+

>mRNA_H-elongata_contig122603.1723.1 ID=mRNA_H-elongata_contig122603.1723.1|Name=mRNA_H-elongata_contig122603.1723.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1746bp|location=Sequence derived from alignment at H-elongata_contig122603:787..1680+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGCGCCGCCAAAGGGGTGGGGGCTGTGGTGGCGGCGAAGACGACG
GTGGCCAGGGGATGGAGAAGACGTTTTGAGCGTTGGCGGGAACTGCTTGA
CTTCGTGCTGCGTGGCACGGTTATCCAGCACGGAAGGGGGGAGACCGCTA
GGGCTTCTGTACGGTGGGACGCTGTTAGCTGACGCCAGCAACTCGCGAAG
GGACGAATTATCCGAGAGCGTGGAGCCTTCCGCGACGGTGACAACGGAAG
CGGTGGCGGTGGAAGTAGTGGCGGCGATGGGGGCGAGAAGTGAAGAGGAG
GTTGACGCCGTCCCCCAGGTCGAAGAGGGTTATGGGCGCGCCGCCAAAGG
GGTGGGGGCTGTGGTGGCGGCGAAGACGACGGTGGCCAGGGGATGGAGAA
GACGTTTTGAGCGTTGGCGGGAACTGCTTGACTTCGTGCTGCGTGGCACG
GTTATCCAGCACGGAAGGGGGGAGACCGCTAGGGCTTCTGTACGGTGGGA
CGCTGTTAGCTGACGCCAGCAACTCGCGAAGGGACGAATTATCCGAGAGC
GTGGAGCCTTCCGCGACGGTGACAACGGAAGCGGTGGCGGTGGAAGTAGT
GGCGGCGATGGGGGCGAGAAGTGAAGAGGAGGTTGACGCCGTCCCCCAGG
TCGAAGAGGGTTACGGTATCGCGTCGAACCTGACCGTGCGCTGGGCGAGC
GTGGTCAACACGGCGCTCGCGGAAACAACGCGGGTGGGGATAGCAAAGCG
ACAGCAGCAGGGCGAGAAGGATTTGGAAAGATCGCGAGAGGGTACGGCCC
CGGCCGCCCGTCGCAAATGGTCTGGAAAGGATTGGCTGGGCATCGGCGCC
AGTTGGAGGGCCGGGGAGGGCTGGACGGGACCGCGGGAAGACCAACCCCT
GGCGAAGACGGCGTCGCCGACATCCATCGACAACACCGTCGCTTCGCCGC
GACCAACGGCAGAAACTGAGAGCAGTCTCGCAGACAGGGCGGTGGTCATA
CGCCGAGGCCGCGGCAAGGAAGTTTTCTTGCCAGTGAACGCGACGACTTC
ATCCTCGTCCTTTATTATGGTCGGTGGGGTCGAGGAACGGGTGGTAGGAA
GCTTCGAAGAAGCGACGGAACAGCCAGGCTGGCGCGTCTGGCGAGGCCCG
ATCAGGAGAAGGGGAACAGTGGAGCTTGAAAGAGAGGAGCTTCAGGAAGA
CGAGACGGTATCGCGTCGAACCTGACCGTGCGCTGGGCGAGCGTGGTCAA
CACGGCGCTCGCGGAAACAACGCGGGTGGGGATAGCAAAGCGACAGCAGC
AGGGCGAGAAGGATTTGGAAAGATCGCGAGAGGGTACGGCCCCGGCCGCC
CGTCGCAAATGGTCTGGAAAGGATTGGCTGGGCATCGGCGCCAGTTGGAG
GGCCGGGGAGGGCTGGACGGGACCGCGGGAAGACCAACCCCTGGCGAAGA
CGGCGTCGCCGACATCCATCGACAACACCGTCGCTTCGCCGCGACCAACG
GCAGAAACTGAGAGCAGTCTCGCAGACAGGGCGGTGGTCATACGCCGAGG
CCGCGGCAAGGAAGTTTTCTTGCCAGTGAACGCGACGACTTCATCCTCGT
CCTTTATTATGGTCGGTGGGGTCGAGGAACGGGTGGTAGGAAGCTTCGAA
GAAGCGACGGAACAGCCAGGCTGGCGCGTCTGGCGAGGCCCGATCAGGAG
AAGGGGAACAGTGGAGCTTGAAAGAGAGGAGCTTCAGGAAGACGAG
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