mRNA_H-elongata_contig122531.1721.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122531.1721.1
Unique NamemRNA_H-elongata_contig122531.1721.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122531.1721.1 vs. uniprot
Match: D8LDX8_ECTSI (Kinesin motor domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDX8_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 3.710e-14
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 DALEETLSSLDYAMKAKNIENKPVANQKLSKTHLLKEYAREV 126
            DALEETLSSLDYA+KAK+I+NKPVANQKLSKTHLLKEYA EV
Sbjct:  318 DALEETLSSLDYALKAKSIQNKPVANQKLSKTHLLKEYAGEV 359
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BLAST of mRNA_H-elongata_contig122531.1721.1 vs. uniprot
Match: A0A836CEW9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEW9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 7.480e-12
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 DALEETLSSLDYAMKAKNIENKPVANQKLSKTHLLKEYAREV 126
            DA+EETLSSLDYA+KAK+IEN+P ANQKL+K H+LKEYA E+
Sbjct:  282 DAMEETLSSLDYALKAKSIENRPTANQKLTKKHMLKEYASEI 323
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BLAST of mRNA_H-elongata_contig122531.1721.1 vs. uniprot
Match: UPI00200C0766 (kinesin-like protein Klp61F isoform X1 n=2 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200C0766)

HSP 1 Score: 55.5 bits (132), Expect = 8.870e-8
Identity = 26/40 (65.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    7 LEETLSSLDYAMKAKNIENKPVANQKLSKTHLLKEYAREV 126
            LEET+S+L+YA +AKNI+NKP  NQK++KT +LKEYA E+
Sbjct:  339 LEETMSTLEYAHRAKNIQNKPEVNQKMTKTAMLKEYAEEI 378
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BLAST of mRNA_H-elongata_contig122531.1721.1 vs. uniprot
Match: UPI000C75DB61 (kinesin-like protein KIF11-A n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C75DB61)

HSP 1 Score: 55.1 bits (131), Expect = 1.210e-7
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    7 LEETLSSLDYAMKAKNIENKPVANQKLSKTHLLKEYAREV 126
            LEETLS+LDYA +AKNI+NKP  NQKLSK  +LKEY  E+
Sbjct:  266 LEETLSTLDYAHRAKNIQNKPEINQKLSKKAVLKEYTEEI 305
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BLAST of mRNA_H-elongata_contig122531.1721.1 vs. uniprot
Match: A0A4C1TD83_EUMVA (Kinesin-like protein Klp61F n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1TD83_EUMVA)

HSP 1 Score: 54.3 bits (129), Expect = 2.270e-7
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    7 LEETLSSLDYAMKAKNIENKPVANQKLSKTHLLKEYAREV 126
            LEETLS+L+YA +AKNI+NKP  NQK++K  +LKEYA E+
Sbjct:  284 LEETLSTLEYAYRAKNIQNKPEVNQKMTKKAILKEYAEEI 323
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BLAST of mRNA_H-elongata_contig122531.1721.1 vs. uniprot
Match: UPI000771B212 (kinesin-like protein Klp61F n=1 Tax=Cephus cinctus TaxID=211228 RepID=UPI000771B212)

HSP 1 Score: 54.3 bits (129), Expect = 2.270e-7
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    7 LEETLSSLDYAMKAKNIENKPVANQKLSKTHLLKEYAREV 126
            LEETLS+LDYA +AKNI N+P  NQKLSK  LLKEY  E+
Sbjct:  337 LEETLSTLDYAYRAKNITNRPEINQKLSKKALLKEYTEEI 376
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BLAST of mRNA_H-elongata_contig122531.1721.1 vs. uniprot
Match: UPI001C9C844D (kinesin-like protein Klp61F isoform X1 n=2 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9C844D)

HSP 1 Score: 54.3 bits (129), Expect = 2.270e-7
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    7 LEETLSSLDYAMKAKNIENKPVANQKLSKTHLLKEYAREV 126
            LEETLS+LDYA +AKNI N+P  NQKLSK  LLKEY  E+
Sbjct:  335 LEETLSTLDYAYRAKNITNRPEINQKLSKKALLKEYTEEI 374
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BLAST of mRNA_H-elongata_contig122531.1721.1 vs. uniprot
Match: A0A6P4YQJ9_BRABE (LOW QUALITY PROTEIN: kinesin-like protein KIF11 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YQJ9_BRABE)

HSP 1 Score: 54.3 bits (129), Expect = 2.270e-7
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    7 LEETLSSLDYAMKAKNIENKPVANQKLSKTHLLKEYAREV 126
            LEETLS+LDYA +AKNI N+P  N+KLSK HL+KE+  E+
Sbjct:  344 LEETLSTLDYAHRAKNITNRPEVNRKLSKKHLMKEFTEEI 383
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BLAST of mRNA_H-elongata_contig122531.1721.1 vs. uniprot
Match: UPI00043FFEEA (bipolar kinesin KRP-130 n=1 Tax=Microplitis demolitor TaxID=69319 RepID=UPI00043FFEEA)

HSP 1 Score: 54.3 bits (129), Expect = 2.270e-7
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    7 LEETLSSLDYAMKAKNIENKPVANQKLSKTHLLKEYAREV 126
            LEETLS+LDYA +AKNI N+P  NQKL+KT L+KEY  E+
Sbjct:  336 LEETLSTLDYAHRAKNITNRPEINQKLTKTTLIKEYTEEI 375
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BLAST of mRNA_H-elongata_contig122531.1721.1 vs. uniprot
Match: A0A834PG34_VESPE (Kinesin motor domain-containing protein n=7 Tax=Vespinae TaxID=7439 RepID=A0A834PG34_VESPE)

HSP 1 Score: 53.9 bits (128), Expect = 3.100e-7
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    7 LEETLSSLDYAMKAKNIENKPVANQKLSKTHLLKEYAREV 126
            LEETLS+LDYA +AKNI N+P  NQKLSK  LLKEY  E+
Sbjct:  384 LEETLSTLDYAHRAKNITNRPEINQKLSKKALLKEYTEEI 423
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122531.1721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDX8_ECTSI3.710e-1490.48Kinesin motor domain-containing protein (Fragment)... [more]
A0A836CEW9_9STRA7.480e-1276.19P-loop containing nucleoside triphosphate hydrolas... [more]
UPI00200C07668.870e-865.00kinesin-like protein Klp61F isoform X1 n=2 Tax=Leg... [more]
UPI000C75DB611.210e-770.00kinesin-like protein KIF11-A n=1 Tax=Eurytemora af... [more]
A0A4C1TD83_EUMVA2.270e-765.00Kinesin-like protein Klp61F n=1 Tax=Eumeta variega... [more]
UPI000771B2122.270e-770.00kinesin-like protein Klp61F n=1 Tax=Cephus cinctus... [more]
UPI001C9C844D2.270e-770.00kinesin-like protein Klp61F isoform X1 n=2 Tax=Ven... [more]
A0A6P4YQJ9_BRABE2.270e-765.00LOW QUALITY PROTEIN: kinesin-like protein KIF11 n=... [more]
UPI00043FFEEA2.270e-767.50bipolar kinesin KRP-130 n=1 Tax=Microplitis demoli... [more]
A0A834PG34_VESPE3.100e-770.00Kinesin motor domain-containing protein n=7 Tax=Ve... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122531contigH-elongata_contig122531:271..396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue6.7e-12
Seed eggNOG ortholog2880.D8LDX8
KEGG koko:K10398,ko:K14400
KEGG Pathwayko03015,map03015
GOsGO:0000226,GO:0000278,GO:0000281,GO:0000902,GO:0000910,GO:0000911,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005819,GO:0005856,GO:0005871,GO:0005874,GO:0005875,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0008574,GO:0009653,GO:0009826,GO:0009987,GO:0015630,GO:0016020,GO:0016043,GO:0016049,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0030865,GO:0031122,GO:0032502,GO:0032506,GO:0032989,GO:0032991,GO:0040007,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043622,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0048589,GO:0048856,GO:0048869,GO:0051301,GO:0060560,GO:0061640,GO:0071840,GO:0071944,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1902410,GO:1902850,GO:1903047,GO:1990939
EggNOG free text desc.ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsCOG5059@1,KOG0243@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03036,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.1537132-CDS-H-elongata_contig122531:270..3961622929721.1537132-CDS-H-elongata_contig122531:270..396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122531 271..396 +
1691679132.2899034-CDS-H-elongata_contig122531:270..3961691679132.2899034-CDS-H-elongata_contig122531:270..396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122531 271..396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122531.1721.1prot_H-elongata_contig122531.1721.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122531 271..396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122531.1721.1

>prot_H-elongata_contig122531.1721.1 ID=prot_H-elongata_contig122531.1721.1|Name=mRNA_H-elongata_contig122531.1721.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
DALEETLSSLDYAMKAKNIENKPVANQKLSKTHLLKEYAREV
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mRNA from alignment at H-elongata_contig122531:271..396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122531.1721.1 ID=mRNA_H-elongata_contig122531.1721.1|Name=mRNA_H-elongata_contig122531.1721.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig122531:271..396+ (Himanthalia elongata Himel1 dioecious)
GATGCTCTCGAGGAGACGCTGAGCTCTCTCGACTACGCAATGAAAGCGAA
GAACATCGAAAACAAGCCAGTGGCCAACCAGAAGCTTAGCAAGACGCACC
TACTCAAGGAGTATGCGAGAGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig122531:271..396+

>mRNA_H-elongata_contig122531.1721.1 ID=mRNA_H-elongata_contig122531.1721.1|Name=mRNA_H-elongata_contig122531.1721.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig122531:271..396+ (Himanthalia elongata Himel1 dioecious)
GATGCTCTCGAGGAGACGCTGAGCTCTCTCGACTACGCAATGAAAGCGAA
GAACATCGAAAACAAGCCAGTGGCCAACCAGAAGCTTAGCAAGACGCACC
TACTCAAGGAGTATGCGAGAGAGGTGGATGCTCTCGAGGAGACGCTGAGC
TCTCTCGACTACGCAATGAAAGCGAAGAACATCGAAAACAAGCCAGTGGC
CAACCAGAAGCTTAGCAAGACGCACCTACTCAAGGAGTATGCGAGAGAGG
TG
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