mRNA_H-elongata_contig121879.1675.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121879.1675.1
Unique NamemRNA_H-elongata_contig121879.1675.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig121879.1675.1 vs. uniprot
Match: D7FWN8_ECTSI (Haloacid dehalogenase-like hydrolase family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWN8_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 2.460e-36
Identity = 61/74 (82.43%), Postives = 65/74 (87.84%), Query Frame = 1
Query:   25 VHESCANSGQN-DLPQALIFDCDGVLADTERDGHRPAFNAAFKIKNIDCEWGVDLYGKLLSVGGGKERMTAHWN 243
            V  S    GQ  DLPQALIFDCDGVLADTERDGHRPAFN+AFKIKN+DCEW V+LYGKLLSVGGGKERMTAHW+
Sbjct:   40 VESSSTAGGQTEDLPQALIFDCDGVLADTERDGHRPAFNSAFKIKNLDCEWSVELYGKLLSVGGGKERMTAHWD 113          
BLAST of mRNA_H-elongata_contig121879.1675.1 vs. uniprot
Match: A0A835Z3K7_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3K7_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.090e-32
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 1
Query:   61 LPQALIFDCDGVLADTERDGHRPAFNAAFKIKNIDCEWGVDLYGKLLSVGGGKERMTAHWN 243
            LPQALIFDCDGVLADTERDGHRPAFN AFK K IDC W VDLYGKLL VGGGKERMTAHW+
Sbjct:   29 LPQALIFDCDGVLADTERDGHRPAFNEAFKAKGIDCVWDVDLYGKLLEVGGGKERMTAHWD 89          
BLAST of mRNA_H-elongata_contig121879.1675.1 vs. uniprot
Match: W7UBX2_9STRA (Protein cbby n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBX2_9STRA)

HSP 1 Score: 111 bits (277), Expect = 5.940e-28
Identity = 49/66 (74.24%), Postives = 53/66 (80.30%), Query Frame = 1
Query:   46 SGQNDLPQALIFDCDGVLADTERDGHRPAFNAAFKIKNIDCEWGVDLYGKLLSVGGGKERMTAHWN 243
            +G ++   AL+FDCDGVLADTERDGHRP FN AFK K IDC W V LYG LL VGGGKERMTAHWN
Sbjct:   45 AGDSNANWALLFDCDGVLADTERDGHRPCFNLAFKEKGIDCTWDVVLYGNLLEVGGGKERMTAHWN 110          
BLAST of mRNA_H-elongata_contig121879.1675.1 vs. uniprot
Match: A0A7R9W5L6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W5L6_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.430e-27
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 1
Query:   67 QALIFDCDGVLADTERDGHRPAFNAAFKIKNIDCEWGVDLYGKLLSVGGGKERMTAHWN 243
            +A++FDCDGVLADTERDGHRPAFN AFK  +ID EWGV+ YG LL  GGGKERMTAHWN
Sbjct:  103 EAILFDCDGVLADTERDGHRPAFNRAFKENDIDEEWGVERYGVLLETGGGKERMTAHWN 161          
BLAST of mRNA_H-elongata_contig121879.1675.1 vs. uniprot
Match: A0A7S2FPW0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FPW0_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.200e-27
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 1
Query:   70 ALIFDCDGVLADTERDGHRPAFNAAFKIKNIDCEWGVDLYGKLLSVGGGKERMTAHWN 243
            A++FDCDGVLADTERDGHR AFN AFK  N+D EW V+LYG+LLSVGGGKERMTAHWN
Sbjct:   53 AILFDCDGVLADTERDGHRVAFNTAFKENNLDTEWSVELYGELLSVGGGKERMTAHWN 110          
BLAST of mRNA_H-elongata_contig121879.1675.1 vs. uniprot
Match: A0A7S1ZBJ4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZBJ4_TRICV)

HSP 1 Score: 108 bits (271), Expect = 4.020e-27
Identity = 49/72 (68.06%), Postives = 54/72 (75.00%), Query Frame = 1
Query:   28 HESCANSGQNDLPQALIFDCDGVLADTERDGHRPAFNAAFKIKNIDCEWGVDLYGKLLSVGGGKERMTAHWN 243
            H     S  +  P+A++FDCDGVLADTERDGHRPAFN AF    ID EWGV+ YG LL VGGGKERMTAHWN
Sbjct:   33 HGMSVPSALSVAPEAILFDCDGVLADTERDGHRPAFNRAFAENQIDEEWGVERYGVLLEVGGGKERMTAHWN 104          
BLAST of mRNA_H-elongata_contig121879.1675.1 vs. uniprot
Match: A0A7S2V8N0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8N0_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.510e-27
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 1
Query:   61 LPQALIFDCDGVLADTERDGHRPAFNAAFKIKNIDCEWGVDLYGKLLSVGGGKERMTAHWN 243
            +P+A++FDCDGVLADTERDGHRPAFNA F+ + +D +W  +LYG+LL VGGGKERMTAHWN
Sbjct:   47 VPEAILFDCDGVLADTERDGHRPAFNAVFEERRLDTDWTPELYGRLLEVGGGKERMTAHWN 107          
BLAST of mRNA_H-elongata_contig121879.1675.1 vs. uniprot
Match: A0A388L2W8_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L2W8_CHABU)

HSP 1 Score: 108 bits (269), Expect = 2.930e-26
Identity = 46/62 (74.19%), Postives = 55/62 (88.71%), Query Frame = 1
Query:   58 DLPQALIFDCDGVLADTERDGHRPAFNAAFKIKNIDCEWGVDLYGKLLSVGGGKERMTAHWN 243
            DLP+AL+FDCDGVL DTERDGHR +FNAAF+ K +D EWGVDLYG+LL +GGGKERMT ++N
Sbjct:  123 DLPEALLFDCDGVLVDTERDGHRVSFNAAFEEKGLDVEWGVDLYGELLKIGGGKERMTHYFN 184          
BLAST of mRNA_H-elongata_contig121879.1675.1 vs. uniprot
Match: A0A8J4GZ07_9CHLO (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4GZ07_9CHLO)

HSP 1 Score: 106 bits (264), Expect = 4.630e-26
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 1
Query:   37 CANSGQNDLPQALIFDCDGVLADTERDGHRPAFNAAFKIKNIDCEWGVDLYGKLLSVGGGKERMTAHWN 243
            C  +    LP+AL+FDCDGVL DTERDGHR +FN AFK K +D EWGVDLYG+LL +GGGKERMT ++N
Sbjct:   30 CVLAKAQQLPEALLFDCDGVLVDTERDGHRISFNQAFKQKGLDHEWGVDLYGELLEIGGGKERMTKYFN 98          
BLAST of mRNA_H-elongata_contig121879.1675.1 vs. uniprot
Match: A0A7S4IMN1_9STRA (Hypothetical protein n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IMN1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 8.170e-26
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 1
Query:   67 QALIFDCDGVLADTERDGHRPAFNAAFKIKNIDCEWGVDLYGKLLSVGGGKERMTAHWN 243
            +A++FDCDGVLADTERDGHRPAFN AFK   ID EWG++ YG LL  GGGKERMTAHWN
Sbjct:   49 EAILFDCDGVLADTERDGHRPAFNRAFKENGIDEEWGIERYGVLLETGGGKERMTAHWN 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121879.1675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWN8_ECTSI2.460e-3682.43Haloacid dehalogenase-like hydrolase family protei... [more]
A0A835Z3K7_9STRA2.090e-3288.52HAD-like domain-containing protein n=1 Tax=Tribone... [more]
W7UBX2_9STRA5.940e-2874.24Protein cbby n=1 Tax=Nannochloropsis gaditana TaxI... [more]
A0A7R9W5L6_9STRA1.430e-2777.97Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2FPW0_9STRA2.200e-2781.03Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1ZBJ4_TRICV4.020e-2768.06Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2V8N0_9STRA4.510e-2772.13Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A388L2W8_CHABU2.930e-2674.19Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A8J4GZ07_9CHLO4.630e-2666.67Uncharacterized protein n=2 Tax=Volvox TaxID=3066 ... [more]
A0A7S4IMN1_9STRA8.170e-2676.27Hypothetical protein n=4 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121879contigH-elongata_contig121879:342..973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue2.5e-29
Seed eggNOG ortholog2880.D7FWN8
EggNOG free text desc.pseudouridine 5'-phosphatase activity
EggNOG OGsCOG0637@1,KOG2914@2759
Ec32 ortholog descriptionhaloacid dehalogenase-like hydrolase family protein
Ec32 orthologEc-06_001350.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929717.6816053-CDS-H-elongata_contig121879:341..5041622929717.6816053-CDS-H-elongata_contig121879:341..504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121879 342..504 +
1691679130.65021-CDS-H-elongata_contig121879:341..5041691679130.65021-CDS-H-elongata_contig121879:341..504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121879 342..504 +
1622929717.69702-CDS-H-elongata_contig121879:872..9731622929717.69702-CDS-H-elongata_contig121879:872..973Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121879 873..973 +
1691679130.6656318-CDS-H-elongata_contig121879:872..9731691679130.6656318-CDS-H-elongata_contig121879:872..973Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121879 873..973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121879.1675.1prot_H-elongata_contig121879.1675.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121879 342..973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121879.1675.1

>prot_H-elongata_contig121879.1675.1 ID=prot_H-elongata_contig121879.1675.1|Name=mRNA_H-elongata_contig121879.1675.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
EGEAATVPVHESCANSGQNDLPQALIFDCDGVLADTERDGHRPAFNAAFK
IKNIDCEWGVDLYGKLLSVGGGKERMTAHWNGGSCSW*
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mRNA from alignment at H-elongata_contig121879:342..973+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121879.1675.1 ID=mRNA_H-elongata_contig121879.1675.1|Name=mRNA_H-elongata_contig121879.1675.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=632bp|location=Sequence derived from alignment at H-elongata_contig121879:342..973+ (Himanthalia elongata Himel1 dioecious)
GAGGGAGAGGCCGCAACCGTACCTGTTCATGAATCTTGCGCTAATTCTGG TCAGAACGATTTACCCCAGGCGTTGATATTCGATTGCGACGGTGTATTGG CAGACACGGAGCGCGATGGTCACCGTCCGGCCTTCAATGCCGCGTTCAAG ATAAAAAATATTGGTGAGATATACCGATTTTTGCGCGAGCTTGGTTGGAG AGATAAGGTTTACTTGTGATACGACCCTGGGATTGTGGTTTGTTGAATGA ACGTCATCACGACAACTCCTGAGGGTGGTTGTTCTCTATTACGGTTTCCT TTGCATGTAGTGCTCCCGCGCGCTTTTCCCGTCGGATGGACGATGTGAAC TAGATTCTCTCCAAGAACATAGATTGACTTGGTCGGCAAGGAGGGTCGCG TCGAGTGCACCCAACGTGCGATGCCCATGCAACAGCGCCCGGTATATATG GGCTCCAATGGCACCAGATATCTTCAATTTTACTGCTTACCAGGACGTCG TTTTTGTGTGCACGTATATTCTCTTCCCTAGATTGCGAGTGGGGTGTGGA CCTGTACGGCAAGCTCCTGTCCGTTGGTGGCGGGAAGGAGCGGATGACAG CACACTGGAATGGTGGGTCATGTAGCTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig121879:342..973+

>mRNA_H-elongata_contig121879.1675.1 ID=mRNA_H-elongata_contig121879.1675.1|Name=mRNA_H-elongata_contig121879.1675.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig121879:342..973+ (Himanthalia elongata Himel1 dioecious)
GAGGGAGAGGCCGCAACCGTACCTGTTCATGAATCTTGCGCTAATTCTGG
TCAGAACGATTTACCCCAGGCGTTGATATTCGATTGCGACGGTGTATTGG
CAGACACGGAGCGCGATGGTCACCGTCCGGCCTTCAATGCCGCGTTCAAG
ATAAAAAATATTGGAGGGAGAGGCCGCAACCGTACCTGTTCATGAATCTT
GCGCTAATTCTGGTCAGAACGATTTACCCCAGGCGTTGATATTCGATTGC
GACGGTGTATTGGCAGACACGGAGCGCGATGGTCACCGTCCGGCCTTCAA
TGCCGCGTTCAAGATAAAAAATATTGATTGCGAGTGGGGTGTGGACCTGT
ACGGCAAGCTCCTGTCCGTTGGTGGCGGGAAGGAGCGGATGACAGCACAC
TGGAATGGTGGGTCATGTAGCTGGTGAATTGCGAGTGGGGTGTGGACCTG
TACGGCAAGCTCCTGTCCGTTGGTGGCGGGAAGGAGCGGATGACAGCACA
CTGGAATGGTGGGTCATGTAGCTGGTGA
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