mRNA_H-elongata_contig121705.1659.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: D8LRW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRW3_ECTSI) HSP 1 Score: 198 bits (504), Expect = 2.920e-56 Identity = 102/133 (76.69%), Postives = 113/133 (84.96%), Query Frame = 1
Query: 1 ERLAKMECWHERGGILVMSYTVFRIMA--SLAGDDGERSRKLILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVK 393
+RL KME WHERGGILVMSY++F M + ERSR +LDPGPDVV+ADEAHLLKNE A+VT AIKK+RT+RRVALTGSPLQNNLVEYYTMVDFVRKGMLG L RFK+YFEAPI+NGMLVDSSP DVK
Sbjct: 1918 DRLRKMEQWHERGGILVMSYSIFLNMTRNGAKSERVERSRAFLLDPGPDVVVADEAHLLKNEGAQVTQAIKKIRTRRRVALTGSPLQNNLVEYYTMVDFVRKGMLGTLERFKNYFEAPIVNGMLVDSSPYDVK 2050
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: A0A6H5KF11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF11_9PHAE) HSP 1 Score: 193 bits (491), Expect = 1.650e-54 Identity = 99/133 (74.44%), Postives = 112/133 (84.21%), Query Frame = 1
Query: 1 ERLAKMECWHERGGILVMSYTVFRIMA--SLAGDDGERSRKLILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVK 393
+RL KM WH+RGGILVMSY++F M + ERSR +LDPGPDVV+ADEAHLLKNE A+VT AIKK+RT+RRVALTGSPLQNNLVEYYTMVDFVR+GMLG L RFK+YFEAPI+NGMLVDSSP DVK
Sbjct: 1798 DRLRKMNQWHKRGGILVMSYSIFLNMTRNGAKSERVERSRAFLLDPGPDVVVADEAHLLKNEGAQVTQAIKKIRTRRRVALTGSPLQNNLVEYYTMVDFVRQGMLGTLERFKNYFEAPIVNGMLVDSSPYDVK 1930
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: UPI00148FBD27 (transcriptional regulator ATRX-like n=1 Tax=Notolabrus celidotus TaxID=1203425 RepID=UPI00148FBD27) HSP 1 Score: 137 bits (346), Expect = 5.450e-35 Identity = 61/136 (44.85%), Postives = 100/136 (73.53%), Query Frame = 1
Query: 1 ERLAKMECWHERGGILVMSYTVFRIMA---SLAGDDGERS-RKLILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVKV 396
ER+ ++ W GG+++M Y ++R ++ ++ DG++ R+L++DPGPD+V+ DE H+LKNE +K++ A+ ++T+RRV LTG+PLQNNL EY+ MV+F++K +LG+L F++ F PI NG DS+P+DV+V
Sbjct: 1123 ERIRALQKWQREGGVIIMGYEMYRNLSLAQKISNVDGKKEIRRLLVDPGPDIVVCDEGHILKNESSKISKAMNAIKTRRRVVLTGTPLQNNLTEYHCMVNFIKKNLLGSLKEFRNRFINPIQNGQCADSTPKDVRV 1258
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: A0A388M5Y6_CHABU (ATP-dependent helicase ATRX n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M5Y6_CHABU) HSP 1 Score: 137 bits (346), Expect = 5.570e-35 Identity = 66/134 (49.25%), Postives = 95/134 (70.90%), Query Frame = 1
Query: 4 RLAKMECWHERGGILVMSYTVFRIMASLAGDDGERSR----KLILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVK 393
R + WH GG++++ Y FR ++ G++ R + + DPGPD++I DEAH++KNE+A +T A+K VR++RR+ALTGSPLQNNL+EYY MVDFVR+G LG F++ F+ PI NG L DS+P+DV+
Sbjct: 2803 RAVLLSKWHVNGGVMLVGYAAFRNLSMGRNVKGKKIRDSMVRSLQDPGPDMLICDEAHMIKNEKADITQALKLVRSRRRIALTGSPLQNNLMEYYCMVDFVREGFLGKPKDFRNRFQNPITNGQLADSTPKDVR 2936
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: UPI001FB0387A (transcriptional regulator ATRX n=2 Tax=Hippoglossus TaxID=8266 RepID=UPI001FB0387A) HSP 1 Score: 137 bits (345), Expect = 7.450e-35 Identity = 61/136 (44.85%), Postives = 97/136 (71.32%), Query Frame = 1
Query: 1 ERLAKMECWHERGGILVMSYTVFRIMASLAGDDGERSR----KLILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVKV 396
ERL ++ W GG+++M Y ++RI++S + E + K+++DPGPD VI DE H+L+NE + ++ A+ +RT+RRV LTG+P+QNNLVEY+ MV+F++K +LG+L F++ F PI NG DS+P+DV++
Sbjct: 1201 ERLLALQAWQREGGVMIMGYELYRILSSAKNMNNEECKTQLKKILVDPGPDFVICDEGHILRNESSGISKALNGIRTRRRVVLTGTPMQNNLVEYHCMVNFIKKNLLGSLGEFRNRFINPIENGQCADSTPKDVRI 1336
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: UPI00097D0012 (transcriptional regulator ATRX-like isoform X1 n=2 Tax=Paralichthys olivaceus TaxID=8255 RepID=UPI00097D0012) HSP 1 Score: 135 bits (340), Expect = 3.510e-34 Identity = 62/136 (45.59%), Postives = 99/136 (72.79%), Query Frame = 1
Query: 1 ERLAKMECWHERGGILVMSYTVFRIMASLAGDDGERSRK----LILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVKV 396
ERL ++ WH GG+++M Y ++RI+ SLA + E +K +++DPGPD V+ DE H+L+N+ + ++ A+ +RT+RRV LTG+P+QNNLVEY+ MV+F++K +LG+L F++ F PI NG DS+P+DV++
Sbjct: 1214 ERLRALQEWHREGGVMIMGYDIYRIL-SLAKNMNEEWKKQLKTILVDPGPDFVVCDEGHILRNDSSGISKALNGIRTRRRVVLTGTPMQNNLVEYHCMVNFIKKNLLGSLGEFRNRFINPIENGQCADSTPKDVRI 1348
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: UPI000854380D (transcriptional regulator ATRX-like n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854380D) HSP 1 Score: 125 bits (314), Expect = 5.910e-34 Identity = 59/136 (43.38%), Postives = 93/136 (68.38%), Query Frame = 1
Query: 1 ERLAKMECWHERGGILVMSYTVFRIMASLAGDDGERSRKL----ILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVKV 396
ER M+ WH+ GG+LV+ Y ++R + ++ ++L ++DPGPD V+ DE H+LKNE + ++ A+ +RTKRR+ LTG+PLQNNLVEY+ MV+F+++ +LG++ F++ F PI NG DS+ DV+V
Sbjct: 12 ERGYMMQRWHDNGGVLVLGYEMYRNLTQGRNVKSKKLKELYQKTLVDPGPDFVVCDEGHVLKNEASAISKAMNSIRTKRRIILTGTPLQNNLVEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRV 147
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: A0A3B4ZYT5_9TELE (DNA helicase n=2 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B4ZYT5_9TELE) HSP 1 Score: 134 bits (338), Expect = 6.520e-34 Identity = 60/136 (44.12%), Postives = 101/136 (74.26%), Query Frame = 1
Query: 1 ERLAKMECWHERGGILVMSYTVFRIMA---SLAGDDGERSRK-LILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVKV 396
ER+ ++ WH+ GG+++MSY ++RI++ S+ ++ ++ K ++DPGPD V+ DE H+L+NE + ++ A+ ++T+RR+ LTG+PLQNNLVEY+ MV+F++K +LG+L F++ F PI NG DS+P+DV+V
Sbjct: 1194 ERVRALQQWHKHGGVMIMSYELYRILSLGNSIKNEEWKKELKSALVDPGPDFVVCDEGHILRNERSNISKAMNAIKTQRRLVLTGTPLQNNLVEYHCMVNFIKKNLLGSLGEFRNRFINPIQNGQCADSTPKDVRV 1329
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: UPI001939A942 (transcriptional regulator ATRX homolog n=1 Tax=Styela clava TaxID=7725 RepID=UPI001939A942) HSP 1 Score: 133 bits (335), Expect = 1.620e-33 Identity = 61/134 (45.52%), Postives = 94/134 (70.15%), Query Frame = 1
Query: 1 ERLAKMECWHERGGILVMSYTVFRIMASLAGDDGERS--RKLILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVKV 396
ER++ + W + GG+L++ Y ++RIM + G + + ++DPGPDVV+ DE H+LKN + ++ I K+RTKRR+ LTG+PLQNNL+EY+ MVDFV+ +LG+L F++ F PI+NG +DS+ DVK+
Sbjct: 358 ERVSMLRLWRKNGGVLILGYDMYRIMTTKIRYSGWKKTVHECLVDPGPDVVVCDEGHMLKNATSHISKQISKMRTKRRLVLTGTPLQNNLIEYHCMVDFVKPDLLGSLKEFRNRFVNPIINGQHIDSTDRDVKI 491
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: H2YE12_CIOSA (Uncharacterized protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YE12_CIOSA) HSP 1 Score: 132 bits (331), Expect = 1.710e-33 Identity = 62/132 (46.97%), Postives = 93/132 (70.45%), Query Frame = 1
Query: 1 ERLAKMECWHERGGILVMSYTVFRIMASLAGDDGERSRKLILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVKV 396
ERL ME W + GG++V+ Y +FR++AS R L+LDPGPD+V+ DE H LKN E+ +++ + K++TKRR+ LTG+PLQNNL+EY MV+FV+ +LG++ F++ F PI NG +DS+ DV++
Sbjct: 108 ERLKVMEKWSKTGGVMVLGYDMFRLLAS------GRFAHLLLDPGPDIVVCDEGHKLKNSESNISIVMNKLKTKRRLVLTGTPLQNNLIEYQCMVNFVKPNLLGSIKEFRNRFVNPISNGQHLDSTERDVRL 233 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig121705.1659.1 >prot_H-elongata_contig121705.1659.1 ID=prot_H-elongata_contig121705.1659.1|Name=mRNA_H-elongata_contig121705.1659.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp MECWHERGGILVMSYTVFRIMASLAGDDGERSRKLILDPGPDVVIADEAHback to top mRNA from alignment at H-elongata_contig121705:748..1438+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig121705.1659.1 ID=mRNA_H-elongata_contig121705.1659.1|Name=mRNA_H-elongata_contig121705.1659.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=691bp|location=Sequence derived from alignment at H-elongata_contig121705:748..1438+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig121705:748..1438+ >mRNA_H-elongata_contig121705.1659.1 ID=mRNA_H-elongata_contig121705.1659.1|Name=mRNA_H-elongata_contig121705.1659.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig121705:748..1438+ (Himanthalia elongata Himel1 dioecious)back to top |