mRNA_H-elongata_contig121488.1648.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121488.1648.1
Unique NamemRNA_H-elongata_contig121488.1648.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig121488.1648.1 vs. uniprot
Match: D8LQQ0_ECTSI (GPI ethanolamine phosphate transferase 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQQ0_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 9.020e-27
Identity = 54/64 (84.38%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:   10 SNRDLHTVDDGVLSHLSTELASDDWEVLVAHFLGVDHVGHTFGPASQAMEDKLGQMDAALRFDF 201
            + RDLHTVDDGVLSHLSTEL   DW+VLVAHFLGVDHVGHTFGPASQAMEDKL QM+AALR  F
Sbjct:  236 NTRDLHTVDDGVLSHLSTELGKRDWDVLVAHFLGVDHVGHTFGPASQAMEDKLDQMNAALRTVF 299
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BLAST of mRNA_H-elongata_contig121488.1648.1 vs. uniprot
Match: A0A836CFR5_9STRA (GPI ethanolamine phosphate transferase 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFR5_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.030e-22
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:   10 SNRDLHTVDDGVLSHLSTELASDDWEVLVAHFLGVDHVGHTFGPASQAMEDKLGQMDAALR 192
            + RDLHTVDDGVL+ L  ELA+ DW VLVAHFLGVDHVGHT GPA++AM DKL QMDAALR
Sbjct:  180 NTRDLHTVDDGVLARLPAELAARDWRVLVAHFLGVDHVGHTHGPATRAMADKLAQMDAALR 240
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BLAST of mRNA_H-elongata_contig121488.1648.1 vs. uniprot
Match: A0A067CQW9_SAPPC (GPI ethanolamine phosphate transferase 3 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQW9_SAPPC)

HSP 1 Score: 89.4 bits (220), Expect = 4.530e-19
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 DCLSNRDLHTVDDGVLSHLSTELASDDWEVLVAHFLGVDHVGHTFGPASQAMEDKLGQMDAAL 189
            D  + +DLHTVD+GVL+H+  ELA  DW+VL+AHFLGVDHVGHT+GP S  ME KL QMDA L
Sbjct:  193 DSFNVKDLHTVDNGVLAHIFDELALPDWDVLIAHFLGVDHVGHTYGPNSPYMETKLDQMDAFL 255
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BLAST of mRNA_H-elongata_contig121488.1648.1 vs. uniprot
Match: A0A2I4AR28_9TELE (GPI ethanolamine phosphate transferase 3 n=4 Tax=Rivulidae TaxID=28771 RepID=A0A2I4AR28_9TELE)

HSP 1 Score: 89.0 bits (219), Expect = 6.230e-19
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   16 RDLHTVDDGVLSHLSTELASDDWEVLVAHFLGVDHVGHTFGPASQAMEDKLGQMDAALR 192
            +DLHTVDDG+L HL T +  DDW+VLVAHFLGVDH GH FGP   AM DKL QMD  +R
Sbjct:  191 KDLHTVDDGILQHLYTTMVGDDWDVLVAHFLGVDHCGHRFGPDHPAMADKLTQMDDVIR 249
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BLAST of mRNA_H-elongata_contig121488.1648.1 vs. uniprot
Match: A0A667ZWD7_9TELE (GPI ethanolamine phosphate transferase 3 n=2 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667ZWD7_9TELE)

HSP 1 Score: 89.0 bits (219), Expect = 6.230e-19
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   16 RDLHTVDDGVLSHLSTELASDDWEVLVAHFLGVDHVGHTFGPASQAMEDKLGQMDAALR 192
            +DLHTVDDG+L HL   + SDDW+VLVAHFLGVDH GH FGP   AM DKL QMD  +R
Sbjct:  191 KDLHTVDDGILQHLYPTMVSDDWDVLVAHFLGVDHCGHRFGPDHPAMADKLTQMDGVIR 249
[Close]
BLAST of mRNA_H-elongata_contig121488.1648.1 vs. uniprot
Match: A0A668ABC4_9TELE (GPI ethanolamine phosphate transferase 3 n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A668ABC4_9TELE)

HSP 1 Score: 89.0 bits (219), Expect = 6.230e-19
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   16 RDLHTVDDGVLSHLSTELASDDWEVLVAHFLGVDHVGHTFGPASQAMEDKLGQMDAALR 192
            +DLHTVDDG+L HL   + SDDW+VLVAHFLGVDH GH FGP   AM DKL QMD  +R
Sbjct:  199 KDLHTVDDGILQHLYPTMVSDDWDVLVAHFLGVDHCGHRFGPDHPAMADKLTQMDGVIR 257
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BLAST of mRNA_H-elongata_contig121488.1648.1 vs. uniprot
Match: A0A1A8E7T8_9TELE (GPI ethanolamine phosphate transferase 3 (Fragment) n=2 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8E7T8_9TELE)

HSP 1 Score: 87.8 bits (216), Expect = 1.560e-18
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:   16 RDLHTVDDGVLSHLSTELASDDWEVLVAHFLGVDHVGHTFGPASQAMEDKLGQMDAALR 192
            +DLHTVD+G+L HL T +  DDW+VLVAHFLGVDH GH FGP   AM DKL QMD+ +R
Sbjct:  191 KDLHTVDNGILQHLYTTMMGDDWDVLVAHFLGVDHCGHRFGPDHPAMADKLTQMDSVIR 249
[Close]
BLAST of mRNA_H-elongata_contig121488.1648.1 vs. uniprot
Match: A0A485KED0_9STRA (GPI ethanolamine phosphate transferase 3 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KED0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.580e-18
Identity = 43/65 (66.15%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 DCLSNRDLHTVDDGVLSHLSTELAS-DDWEVLVAHFLGVDHVGHTFGPASQAMEDKLGQMDAALR 192
            D  + +DLHTVD+GVL H   EL + DDW+VL+AHFLGVDHVGHTFGP   AME KL QM+A LR
Sbjct:  200 DSFNVKDLHTVDNGVLDHFFPELETRDDWDVLIAHFLGVDHVGHTFGPNHPAMESKLAQMNAFLR 264
[Close]
BLAST of mRNA_H-elongata_contig121488.1648.1 vs. uniprot
Match: A0A3Q4BZC2_MOLML (GPI ethanolamine phosphate transferase 3 n=1 Tax=Mola mola TaxID=94237 RepID=A0A3Q4BZC2_MOLML)

HSP 1 Score: 87.8 bits (216), Expect = 1.580e-18
Identity = 39/59 (66.10%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:   16 RDLHTVDDGVLSHLSTELASDDWEVLVAHFLGVDHVGHTFGPASQAMEDKLGQMDAALR 192
            +DLHTVDDG+L HL   +  DDW+VLVAHFLGVDH GH FGP   AM DKL QMD  +R
Sbjct:  192 KDLHTVDDGILQHLYATMVGDDWDVLVAHFLGVDHCGHRFGPDHPAMADKLTQMDGVIR 250
[Close]
BLAST of mRNA_H-elongata_contig121488.1648.1 vs. uniprot
Match: UPI001C3651EA ((large yellow croaker) hypothetical protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI001C3651EA)

HSP 1 Score: 87.8 bits (216), Expect = 1.580e-18
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   16 RDLHTVDDGVLSHLSTELASDDWEVLVAHFLGVDHVGHTFGPASQAMEDKLGQMDAALR 192
            +DLHTVD+G+L HL T +  DDW+VLVAHFLGVDH GH FGP   AM DKL QMD  +R
Sbjct:  191 KDLHTVDNGILQHLYTTMVGDDWDVLVAHFLGVDHCGHRFGPDHPAMADKLTQMDGVIR 249
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121488.1648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQQ0_ECTSI9.020e-2784.38GPI ethanolamine phosphate transferase 3 n=2 Tax=E... [more]
A0A836CFR5_9STRA1.030e-2277.05GPI ethanolamine phosphate transferase 3 n=1 Tax=T... [more]
A0A067CQW9_SAPPC4.530e-1966.67GPI ethanolamine phosphate transferase 3 n=2 Tax=S... [more]
A0A2I4AR28_9TELE6.230e-1967.80GPI ethanolamine phosphate transferase 3 n=4 Tax=R... [more]
A0A667ZWD7_9TELE6.230e-1967.80GPI ethanolamine phosphate transferase 3 n=2 Tax=M... [more]
A0A668ABC4_9TELE6.230e-1967.80GPI ethanolamine phosphate transferase 3 n=1 Tax=M... [more]
A0A1A8E7T8_9TELE1.560e-1866.10GPI ethanolamine phosphate transferase 3 (Fragment... [more]
A0A485KED0_9STRA1.580e-1866.15GPI ethanolamine phosphate transferase 3 n=1 Tax=A... [more]
A0A3Q4BZC2_MOLML1.580e-1866.10GPI ethanolamine phosphate transferase 3 n=1 Tax=M... [more]
UPI001C3651EA1.580e-1866.10(large yellow croaker) hypothetical protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121488contigH-elongata_contig121488:357..584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue1.2e-22
Seed eggNOG ortholog2880.D8LQQ0
Preferred namePIGO
KEGG rclassRC00017
KEGG koko:K05288
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016772,GO:0016780,GO:0019538,GO:0019637,GO:0031224,GO:0031984,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0051377,GO:0071704,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509
EggNOG free text desc.mannose-ethanolamine phosphotransferase activity
EggNOG OGsCOG1524@1,KOG2126@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929714.952922-CDS-H-elongata_contig121488:356..5841622929714.952922-CDS-H-elongata_contig121488:356..584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121488 357..584 -
1691679129.611463-CDS-H-elongata_contig121488:356..5841691679129.611463-CDS-H-elongata_contig121488:356..584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121488 357..584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121488.1648.1prot_H-elongata_contig121488.1648.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121488 357..584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121488.1648.1

>prot_H-elongata_contig121488.1648.1 ID=prot_H-elongata_contig121488.1648.1|Name=mRNA_H-elongata_contig121488.1648.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
DCLSNRDLHTVDDGVLSHLSTELASDDWEVLVAHFLGVDHVGHTFGPASQ
AMEDKLGQMDAALRFDFLFLYNKKK*
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mRNA from alignment at H-elongata_contig121488:357..584-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121488.1648.1 ID=mRNA_H-elongata_contig121488.1648.1|Name=mRNA_H-elongata_contig121488.1648.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig121488:357..584- (Himanthalia elongata Himel1 dioecious)
GATTGTTTGTCGAACAGAGACCTGCACACCGTTGACGACGGTGTGCTCTC
CCATCTCTCGACCGAGCTCGCCAGCGACGACTGGGAGGTGCTCGTGGCCC
ATTTCTTGGGGGTTGACCACGTCGGGCACACGTTCGGCCCCGCTTCGCAA
GCAATGGAGGACAAGCTCGGCCAGATGGATGCCGCCCTCAGGTTCGACTT
CTTGTTCCTTTATAATAAAAAAAAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig121488:357..584-

>mRNA_H-elongata_contig121488.1648.1 ID=mRNA_H-elongata_contig121488.1648.1|Name=mRNA_H-elongata_contig121488.1648.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig121488:357..584- (Himanthalia elongata Himel1 dioecious)
GATTGTTTGTCGAACAGAGACCTGCACACCGTTGACGACGGTGTGCTCTC
CCATCTCTCGACCGAGCTCGCCAGCGACGACTGGGAGGTGCTCGTGGCCC
ATTTCTTGGGGGTTGACCACGTCGGGCACACGTTCGGCCCCGCTTCGCAA
GCAATGGAGGACAAGCTCGGCCAGATGGATGCCGCCCTCAGGTTCGACTT
CTTGTTCCTTTATAATAAAAAAAAGTAAGATTGTTTGTCGAACAGAGACC
TGCACACCGTTGACGACGGTGTGCTCTCCCATCTCTCGACCGAGCTCGCC
AGCGACGACTGGGAGGTGCTCGTGGCCCATTTCTTGGGGGTTGACCACGT
CGGGCACACGTTCGGCCCCGCTTCGCAAGCAATGGAGGACAAGCTCGGCC
AGATGGATGCCGCCCTCAGGTTCGACTTCTTGTTCCTTTATAATAAAAAA
AAGTAA
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