mRNA_H-elongata_contig121452.1643.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121452.1643.1
Unique NamemRNA_H-elongata_contig121452.1643.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig121452.1643.1 vs. uniprot
Match: D8LK05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK05_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 3.370e-29
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    1 GDKIPADLRFIWCNSAKVDNSSLTGEAVPLTRSPRAKKDNSREAENMGFFGTTLITGAAIGVVIRTGD 204
            GDKIPADLRFIWCNSA VDNSSLTGE+ PL R+  A+ D+SREAENMGFFGTTL+ G+A+GVVIRTGD
Sbjct:   81 GDKIPADLRFIWCNSATVDNSSLTGESAPLKRTATARTDSSREAENMGFFGTTLVQGSAVGVVIRTGD 148
[Close]
BLAST of mRNA_H-elongata_contig121452.1643.1 vs. uniprot
Match: A0A6H5JGR4_9PHAE (Cation_ATPase_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGR4_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 6.300e-29
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 GDKIPADLRFIWCNSAKVDNSSLTGEAVPLTRSPRAKKDNSREAENMGFFGTTLITGAAIGVVIRTGD 204
            GDKIPAD+RFIWCN A VDNSSLTGE+ PL R+  A+ DNSREAENMGFFGTTL+ G+A+GVVIRTGD
Sbjct:  327 GDKIPADIRFIWCNGATVDNSSLTGESAPLKRTATARTDNSREAENMGFFGTTLVQGSALGVVIRTGD 394
[Close]
BLAST of mRNA_H-elongata_contig121452.1643.1 vs. uniprot
Match: A0A8D8NEV2_CULPI (Sodium/potassium-transporting ATPase subunit alpha-1 (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8NEV2_CULPI)

HSP 1 Score: 83.2 bits (204), Expect = 5.060e-19
Identity = 39/69 (56.52%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    1 GDKIPADLRFIWCNSAKVDNSSLTGEAVPLTRSPRAKKDNSREAENMGFFGTTLITGAAIGVVIRTGDR 207
            GD+IPADLR I  +  KVDNSSLTGE+ P TR+P    DN  E  N+ FF T  + G A G+VI TGDR
Sbjct:   23 GDRIPADLRIISAHGCKVDNSSLTGESEPQTRTPDFSNDNPLETRNIAFFSTNCVEGTARGIVINTGDR 91
[Close]
BLAST of mRNA_H-elongata_contig121452.1643.1 vs. uniprot
Match: F8RYH5_9SAUR (Na/K-ATPase (Fragment) n=2 Tax=Nerodia TaxID=8591 RepID=F8RYH5_9SAUR)

HSP 1 Score: 86.7 bits (213), Expect = 1.140e-18
Identity = 41/69 (59.42%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    1 GDKIPADLRFIWCNSAKVDNSSLTGEAVPLTRSPRAKKDNSREAENMGFFGTTLITGAAIGVVIRTGDR 207
            GD+IPADLR I  N  KVDNSSLTGE+ P TRSP    DN  E  N+ FF T  + G A G+VI TGDR
Sbjct:  150 GDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDCTNDNPLETRNIAFFSTNCVEGTARGIVINTGDR 218
[Close]
BLAST of mRNA_H-elongata_contig121452.1643.1 vs. uniprot
Match: A0A6I9YJN6_9SAUR (sodium/potassium-transporting ATPase subunit alpha-3-like n=1 Tax=Thamnophis sirtalis TaxID=35019 RepID=A0A6I9YJN6_9SAUR)

HSP 1 Score: 83.2 bits (204), Expect = 1.510e-18
Identity = 40/69 (57.97%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    1 GDKIPADLRFIWCNSAKVDNSSLTGEAVPLTRSPRAKKDNSREAENMGFFGTTLITGAAIGVVIRTGDR 207
            GD++PADLR I  +  KVDNSSLTGE+ P TRSP    DN  E  N+ FF T  + G A GVVI TGDR
Sbjct:   84 GDRVPADLRIISAHGCKVDNSSLTGESEPQTRSPDCTHDNPLETRNITFFSTNCVEGTARGVVIATGDR 152
[Close]
BLAST of mRNA_H-elongata_contig121452.1643.1 vs. uniprot
Match: A0A6P6YIH3_DERPT (Sodium/potassium-transporting ATPase subunit alpha n=6 Tax=Psoroptidia TaxID=223472 RepID=A0A6P6YIH3_DERPT)

HSP 1 Score: 87.4 bits (215), Expect = 1.610e-18
Identity = 41/69 (59.42%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:    1 GDKIPADLRFIWCNSAKVDNSSLTGEAVPLTRSPRAKKDNSREAENMGFFGTTLITGAAIGVVIRTGDR 207
            GD+IPAD+R I  +  KVDNSSLTGE+ P TRSP    DN  E  N+ FF T  + GAAIG VI TGDR
Sbjct:  180 GDRIPADIRIIKAHGCKVDNSSLTGESEPQTRSPELTSDNPLETRNLAFFSTNCVEGAAIGCVIHTGDR 248
[Close]
BLAST of mRNA_H-elongata_contig121452.1643.1 vs. uniprot
Match: V8N3F1_OPHHA (Sodium/potassium-transporting ATPase subunit alpha-3 (Fragment) n=2 Tax=Sauria TaxID=32561 RepID=V8N3F1_OPHHA)

HSP 1 Score: 83.2 bits (204), Expect = 1.860e-18
Identity = 40/69 (57.97%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    1 GDKIPADLRFIWCNSAKVDNSSLTGEAVPLTRSPRAKKDNSREAENMGFFGTTLITGAAIGVVIRTGDR 207
            GD++PADLR I  +  KVDNSSLTGE+ P TRSP    DN  E  N+ FF T  + G A GVVI TGDR
Sbjct:   39 GDRVPADLRIISAHGCKVDNSSLTGESEPQTRSPDCTHDNPLETRNITFFSTNCVEGTARGVVIATGDR 107
[Close]
BLAST of mRNA_H-elongata_contig121452.1643.1 vs. uniprot
Match: A0A8C6YJN0_NAJNA (Sodium/potassium-transporting ATPase subunit alpha n=6 Tax=Naja naja TaxID=35670 RepID=A0A8C6YJN0_NAJNA)

HSP 1 Score: 87.0 bits (214), Expect = 2.200e-18
Identity = 42/69 (60.87%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    1 GDKIPADLRFIWCNSAKVDNSSLTGEAVPLTRSPRAKKDNSREAENMGFFGTTLITGAAIGVVIRTGDR 207
            GD+IPADLR I  N  KVDNSSLTGE+ P TRSP    DN  E  N+ FF T  + G A GVVI TGDR
Sbjct:  165 GDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDCTNDNPLETRNIAFFSTNCVEGTARGVVINTGDR 233
[Close]
BLAST of mRNA_H-elongata_contig121452.1643.1 vs. uniprot
Match: A0A8C6YIF6_NAJNA (Sodium/potassium-transporting ATPase subunit alpha n=1 Tax=Naja naja TaxID=35670 RepID=A0A8C6YIF6_NAJNA)

HSP 1 Score: 87.0 bits (214), Expect = 2.200e-18
Identity = 42/69 (60.87%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    1 GDKIPADLRFIWCNSAKVDNSSLTGEAVPLTRSPRAKKDNSREAENMGFFGTTLITGAAIGVVIRTGDR 207
            GD+IPADLR I  N  KVDNSSLTGE+ P TRSP    DN  E  N+ FF T  + G A GVVI TGDR
Sbjct:  195 GDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDCTNDNPLETRNIAFFSTNCVEGTARGVVINTGDR 263
[Close]
BLAST of mRNA_H-elongata_contig121452.1643.1 vs. uniprot
Match: UPI0019AD0F78 (sodium/potassium-transporting ATPase subunit alpha-2 isoform X1 n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI0019AD0F78)

HSP 1 Score: 87.0 bits (214), Expect = 2.200e-18
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 GDKIPADLRFIWCNSAKVDNSSLTGEAVPLTRSPRAKKDNSREAENMGFFGTTLITGAAIGVVIRTGDR 207
            GD+IPADLR I  +S KVDNSSLTGE+ P TRSP    +N  E+ N+GFF T  + G A G+VI TGDR
Sbjct:  191 GDRIPADLRIISSSSCKVDNSSLTGESEPQTRSPDCTHENPLESRNIGFFSTNCVEGTACGIVIATGDR 259
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121452.1643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK05_ECTSI3.370e-2979.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGR4_9PHAE6.300e-2977.94Cation_ATPase_N domain-containing protein n=1 Tax=... [more]
A0A8D8NEV2_CULPI5.060e-1956.52Sodium/potassium-transporting ATPase subunit alpha... [more]
F8RYH5_9SAUR1.140e-1859.42Na/K-ATPase (Fragment) n=2 Tax=Nerodia TaxID=8591 ... [more]
A0A6I9YJN6_9SAUR1.510e-1857.97sodium/potassium-transporting ATPase subunit alpha... [more]
A0A6P6YIH3_DERPT1.610e-1859.42Sodium/potassium-transporting ATPase subunit alpha... [more]
V8N3F1_OPHHA1.860e-1857.97Sodium/potassium-transporting ATPase subunit alpha... [more]
A0A8C6YJN0_NAJNA2.200e-1860.87Sodium/potassium-transporting ATPase subunit alpha... [more]
A0A8C6YIF6_NAJNA2.200e-1860.87Sodium/potassium-transporting ATPase subunit alpha... [more]
UPI0019AD0F782.200e-1859.42sodium/potassium-transporting ATPase subunit alpha... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121452contigH-elongata_contig121452:78..284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue3.3e-24
Seed eggNOG ortholog2880.D8LK05
KEGG koko:K01539,ko:K01544
KEGG TC3.A.3.1,3.A.3.1.4
KEGG Pathwayko00190,ko04022,ko04024,ko04260,ko04261,ko04911,ko04918,ko04919,ko04925,ko04960,ko04961,ko04964,ko04970,ko04971,ko04972,ko04973,ko04974,ko04976,ko04978,map00190,map04022,map04024,map04260,map04261,map04911,map04918,map04919,map04925,map04960,map04961,map04964,map04970,map04971,map04972,map04973,map04974,map04976,map04978
EggNOG free text desc.sodium:potassium-exchanging ATPase activity
EggNOG OGsCOG0474@1,KOG0203@2759
EC3.6.3.10,3.6.3.9
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-type ATPase, cytoplasmic domain N
Ec32 orthologEc-06_007680.1
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929714.5207539-CDS-H-elongata_contig121452:77..2841622929714.5207539-CDS-H-elongata_contig121452:77..284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121452 78..284 +
1691679129.4372966-CDS-H-elongata_contig121452:77..2841691679129.4372966-CDS-H-elongata_contig121452:77..284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121452 78..284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121452.1643.1prot_H-elongata_contig121452.1643.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121452 78..284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121452.1643.1

>prot_H-elongata_contig121452.1643.1 ID=prot_H-elongata_contig121452.1643.1|Name=mRNA_H-elongata_contig121452.1643.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
GDKIPADLRFIWCNSAKVDNSSLTGEAVPLTRSPRAKKDNSREAENMGFF
GTTLITGAAIGVVIRTGDR
back to top

mRNA from alignment at H-elongata_contig121452:78..284+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121452.1643.1 ID=mRNA_H-elongata_contig121452.1643.1|Name=mRNA_H-elongata_contig121452.1643.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig121452:78..284+ (Himanthalia elongata Himel1 dioecious)
GGGGACAAGATTCCGGCGGACCTCCGCTTCATCTGGTGCAACTCCGCCAA
GGTGGACAACTCCTCTCTGACGGGCGAGGCTGTGCCGCTCACGAGGAGCC
CCAGGGCGAAGAAGGACAACTCTCGGGAGGCGGAGAACATGGGCTTCTTT
GGCACGACGCTCATCACGGGTGCCGCCATCGGGGTGGTGATCCGCACCGG
AGACAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig121452:78..284+

>mRNA_H-elongata_contig121452.1643.1 ID=mRNA_H-elongata_contig121452.1643.1|Name=mRNA_H-elongata_contig121452.1643.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig121452:78..284+ (Himanthalia elongata Himel1 dioecious)
GGGGACAAGATTCCGGCGGACCTCCGCTTCATCTGGTGCAACTCCGCCAA
GGTGGACAACTCCTCTCTGACGGGCGAGGCTGTGCCGCTCACGAGGAGCC
CCAGGGCGAAGAAGGACAACTCTCGGGAGGCGGAGAACATGGGCTTCTTT
GGCACGACGCTCATCACGGGTGCCGCCATCGGGGTGGTGATCCGCACCGG
AGACAGGGGGGACAAGATTCCGGCGGACCTCCGCTTCATCTGGTGCAACT
CCGCCAAGGTGGACAACTCCTCTCTGACGGGCGAGGCTGTGCCGCTCACG
AGGAGCCCCAGGGCGAAGAAGGACAACTCTCGGGAGGCGGAGAACATGGG
CTTCTTTGGCACGACGCTCATCACGGGTGCCGCCATCGGGGTGGTGATCC
GCACCGGAGACAGG
back to top