mRNA_H-elongata_contig121426.1640.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: D8LJP0_ECTSI (Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP0_ECTSI) HSP 1 Score: 179 bits (453), Expect = 2.350e-49 Identity = 85/129 (65.89%), Postives = 100/129 (77.52%), Query Frame = 1
Query: 1 FAFHFPLSQELWEAWIEDRRGSGGEDAHEEILALYRRAFEDYQCAKLWPGYLETLEESLDVSCVCRAQDDGDGVNTMREAFEEALGRVGVHPIVGGAVWRAYLRFEKDELEDAEETGASDAEVSRKLER 387
F+ FPL ELW+ WI+DRR +GGED E+ILALYRRAF DYQCAKLWPGYLETLE SLD +DD GV+ MREAFEEAL RVGVHP++GGAVWR+ LRFE +ELEDAEE G D E+++ +R
Sbjct: 65 FSERFPLGPELWQEWIDDRRAAGGEDGAEDILALYRRAFADYQCAKLWPGYLETLEASLD-------EDDEGGVSAMREAFEEALTRVGVHPVLGGAVWRSLLRFEMEELEDAEEMGVGDGEIAKARDR 186
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: A0A835Z6Q0_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q0_9STRA) HSP 1 Score: 124 bits (312), Expect = 2.370e-30 Identity = 67/129 (51.94%), Postives = 81/129 (62.79%), Query Frame = 1
Query: 1 FAFHFPLSQELWEAWIEDRRGSGGEDAHEEILALYRRAFEDYQCAKLWPGYLETLEESLDVSCVCRAQDDGDGVNTM-----REAFEEALGRVGVHPIVGGAVWRAYLRFEKDELEDAEETGASDAEVS 372
FA FPLS ELW WI D + GG A ++ ALY RAF+DYQCA LWPGYLE L+E D + A + G + R+A E AL VGVHP VG VW AY FE+DEL+D EETGAS+ E++
Sbjct: 88 FAKAFPLSPELWADWIADEKAGGGNAA--DVKALYERAFKDYQCAALWPGYLELLDEMSDNEDLA-AMEQGQAPEELSETELRQAHEAALTAVGVHPTVGPQVWAAYRTFEQDELQDLEETGASEDELA 213
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: A0A8J4AXY8_9CHLO (RRM domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AXY8_9CHLO) HSP 1 Score: 73.2 bits (178), Expect = 2.500e-12 Identity = 53/132 (40.15%), Postives = 70/132 (53.03%), Query Frame = 1
Query: 4 AFHFPLSQELWEAWIEDRRGS-GGEDAHEEILALYRRAF-EDYQCAKLWPGYLETLEESLDVSCVCRAQD-DGDGVNTMREAFEEALGRVGVHPIVGGAVWRAYLRFEKD-ELEDAEETGASDAEVSRKLER 387
A FPLS+ELW AWI D G+ G D +L L RRA DY +W YLE L LD + +D + DGVN R EEA+ G+H G ++W Y +FE + E + A E G + A SR+ +R
Sbjct: 114 AARFPLSEELWLAWINDELGAVSGPDDVVWLLGLMRRAATRDYLAPAVWELYLE-LAHDLDPA----VRDLEPDGVNRYRALCEEAVAAGGLHLATGHSLWGKYRKFELELETKLAAEKGGTTAAASRQQDR 240
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: D8U4W3_VOLCA (RRM domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U4W3_VOLCA) HSP 1 Score: 64.3 bits (155), Expect = 3.080e-9 Identity = 47/131 (35.88%), Postives = 62/131 (47.33%), Query Frame = 1
Query: 4 AFHFPLSQELWEAWIEDRRG--SGGEDAHEEILALYRRAFEDYQCAKLWPGYLETLEESLDVSCVCRAQD-DGDGVNTMREAFEEALGRVGVHPIVGGAVWRAYLRFEKDELEDAEETGASDAEVSRKLER 387
A FPLS+ELW AWI D SG ED + L R A DY +W YLE + LD + +D + +GV R EEAL G+H G +W Y FE +A G + A +R+ +R
Sbjct: 112 AARFPLSEELWLAWINDELSAVSGPEDLAWLLGLLRRAATRDYLAPAVWELYLEVAHD-LDPA----VRDLEPEGVERYRAICEEALAAAGLHLAAGHRLWSKYRTFEL--AVEARAAGGTSAAAARQQDR 235
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: A8IYA5_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IYA5_CHLRE) HSP 1 Score: 62.8 bits (151), Expect = 1.010e-8 Identity = 39/107 (36.45%), Postives = 53/107 (49.53%), Query Frame = 1
Query: 4 AFHFPLSQELWEAWIEDRRGS-GGEDAHEEILALYRRAF-EDYQCAKLWPGYLETLEESLDVSCVCRAQDDGDGVNTMREAFEEALGRVGVHPIVGGAVWRAYLRFE 318
A FPLS+ELW AW+ D + G D +L+L RRA DY +W YLE + LD + G+G + R EEAL G+H G +W Y ++E
Sbjct: 89 AAKFPLSEELWLAWVNDELAAVNGPDDVAGLLSLLRRAAARDYLAPGVWDLYLEVAHD-LDPEV---KEHSGEGADRYRALCEEALAAAGLHLAEGHKLWAKYRKYE 191
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: A0A2K3D6G9_CHLRE (RRM domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D6G9_CHLRE) HSP 1 Score: 62.8 bits (151), Expect = 1.050e-8 Identity = 39/107 (36.45%), Postives = 53/107 (49.53%), Query Frame = 1
Query: 4 AFHFPLSQELWEAWIEDRRGS-GGEDAHEEILALYRRAF-EDYQCAKLWPGYLETLEESLDVSCVCRAQDDGDGVNTMREAFEEALGRVGVHPIVGGAVWRAYLRFE 318
A FPLS+ELW AW+ D + G D +L+L RRA DY +W YLE + LD + G+G + R EEAL G+H G +W Y ++E
Sbjct: 111 AAKFPLSEELWLAWVNDELAAVNGPDDVAGLLSLLRRAAARDYLAPGVWDLYLEVAHD-LDPEV---KEHSGEGADRYRALCEEALAAAGLHLAEGHKLWAKYRKYE 213
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: A0A8J4G5D8_9CHLO (RRM domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4G5D8_9CHLO) HSP 1 Score: 62.8 bits (151), Expect = 1.060e-8 Identity = 46/132 (34.85%), Postives = 67/132 (50.76%), Query Frame = 1
Query: 4 AFHFPLSQELWEAWIEDRRGS-GGEDAHEEILALYRRAF-EDYQCAKLWPGYLETLEESLDVSCVCRAQD-DGDGVNTMREAFEEALGRVGVHPIVGGAVWRAYLRFEKD-ELEDAEETGASDAEVSRKLER 387
A FPLS+ELW AWI D + G D +L L RRA DY +W YLE + LD + +D + +GV R EEA+ G+H G +W Y ++E + E + + E G + A +R+ +R
Sbjct: 117 AARFPLSEELWLAWINDELAAVSGPDDVVWLLGLMRRAATRDYLAPAVWELYLEVAHD-LDPA----VRDLEPEGVERYRALCEEAVAAGGLHLAAGHRLWEKYRKYELEVETKLSAEKGGATAAAARQQDR 243
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: A0A835W1K2_CHLIN (RRM domain-containing protein n=2 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W1K2_CHLIN) HSP 1 Score: 61.6 bits (148), Expect = 2.660e-8 Identity = 37/107 (34.58%), Postives = 50/107 (46.73%), Query Frame = 1
Query: 4 AFHFPLSQELWEAWIEDRRGS--GGEDAHEEILALYRRAFEDYQCAKLWPGYLETLEESLDVSCVCRAQDDGDGVNTMREAFEEALGRVGVHPIVGGAVWRAYLRFE 318
A FPLS+ELW AW+ D + G ED + L R A DY +W YLE + LD + +G + R EEAL G+H G +W Y ++E
Sbjct: 110 AAKFPLSEELWLAWVNDELAAVNGPEDVASLLSLLRRAATSDYLAPGVWDLYLEVAHD-LDPEV---EEHSAEGADRYRALCEEALAAAGLHLAEGHKLWAKYRKYE 212
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: A0A158N9L6_ATTCE (Uncharacterized protein n=11 Tax=Attini TaxID=143999 RepID=A0A158N9L6_ATTCE) HSP 1 Score: 61.2 bits (147), Expect = 3.600e-8 Identity = 34/103 (33.01%), Postives = 51/103 (49.51%), Query Frame = 1
Query: 13 FPLSQELWEAWIEDR-RGSGGEDAHEEILALYRRAFEDYQCAKLWPGYLETLEESLDVSCVCRAQDDGDGVNTMREAFEEALGRVGVHPIVGGAVWRAYLRFE 318
+PLS ELW AWI D + + +D E++ L RA +DY ++W YL+ + + G +R+ FE AL VG+H G +W AY +E
Sbjct: 103 YPLSPELWLAWISDEIKLATTDDQKTEVIKLCERAIQDYVSVEVWLEYLQ-----FSIGYI------GKDEEKVRQLFERALTVVGMHVTKGAIIWEAYREYE 194
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: UPI0008F98E71 (squamous cell carcinoma antigen recognized by T-cells 3 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F98E71) HSP 1 Score: 61.2 bits (147), Expect = 3.610e-8 Identity = 35/105 (33.33%), Postives = 49/105 (46.67%), Query Frame = 1
Query: 10 HFPLSQELWEAWIEDRRGSGGEDAH-EEILALYRRAFEDYQCAKLWPGYLETLEESLDVSCVCRAQDDGDGVNTMREAFEEALGRVGVHPIVGGAVWRAYLRFEK 321
+FPL+ ELW AW+ D D E++ +L+ RA EDY +LW Y+ + +G +RE E AL G+H G +W AY FEK
Sbjct: 94 YFPLTPELWLAWLRDEIKLASTDQESEKLFSLFERAVEDYLSIELWGEYIHFSIGKM---------GSENGEEKVREIAERALTAGGLHVAKGVLLWEAYREFEK 189 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig121426.1640.1 >prot_H-elongata_contig121426.1640.1 ID=prot_H-elongata_contig121426.1640.1|Name=mRNA_H-elongata_contig121426.1640.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp FAFHFPLSQELWEAWIEDRRGSGGEDAHEEILALYRRAFEDYQCAKLWPGback to top mRNA from alignment at H-elongata_contig121426:507..1544+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig121426.1640.1 ID=mRNA_H-elongata_contig121426.1640.1|Name=mRNA_H-elongata_contig121426.1640.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1038bp|location=Sequence derived from alignment at H-elongata_contig121426:507..1544+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig121426:507..1544+ >mRNA_H-elongata_contig121426.1640.1 ID=mRNA_H-elongata_contig121426.1640.1|Name=mRNA_H-elongata_contig121426.1640.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig121426:507..1544+ (Himanthalia elongata Himel1 dioecious)back to top |