mRNA_H-elongata_contig121326.1636.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: D8LK78_ECTSI (Ubiquinol cytochrome c reductase subunit QCR7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK78_ECTSI) HSP 1 Score: 102 bits (253), Expect = 8.820e-27 Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 1
Query: 1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHIQAVQQP 171
GLKFDDLMIEE+PDVAEA+RRLTP Q+LAR+RRQ RAFDISLKKTPLPDHIQAVQ P
Sbjct: 32 GLKFDDLMIEEDPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDP 88
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: A0A7S3LNZ1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LNZ1_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 1.680e-9 Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHIQAVQQP 171
GL+++D++I ENPDV A++ + P + AR RR RA D+S K LP HIQA+Q P
Sbjct: 26 GLRYEDVIIYENPDVQRALKYIPPEEVEARNRRIRRALDLSFKHKELPKHIQAIQAP 82
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: M2XVT8_GALSU (Ubiquinol-cytochrome c reductase subunit 7 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XVT8_GALSU) HSP 1 Score: 55.5 bits (132), Expect = 2.120e-8 Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHI 153
GL++DDL+ E++PDV +AI L +K R +R +RAFD+S+KKT LP+ I
Sbjct: 37 GLRYDDLLNEQDPDVKQAIEMLPEHEKQLRAKRFIRAFDLSMKKTQLPEEI 87
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: A0A7S2TS46_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TS46_9EUKA) HSP 1 Score: 54.7 bits (130), Expect = 4.900e-8 Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHIQAVQQP 171
GL++DDL+IE +PDV AI RL+P ++ R R RA D +K + +P+H+Q Q P
Sbjct: 46 GLRYDDLLIETDPDVITAISRLSPRERTLRTMRLKRALDCEIKHSYVPEHLQGKQGP 102
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: A0A1X6NXZ7_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NXZ7_PORUM) HSP 1 Score: 53.9 bits (128), Expect = 9.020e-8 Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1
Query: 1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHIQAVQ 165
GL++DDL+ E +P+V + IR + P + R +R RA D+ LKKT LPD IQA Q
Sbjct: 41 GLRYDDLLNEYDPEVRKTIRTMPPEEAELRAKRLTRAIDVDLKKTQLPDPIQAKQ 95
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: A0A7S2WSF4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WSF4_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 9.300e-8 Identity = 24/57 (42.11%), Postives = 41/57 (71.93%), Query Frame = 1
Query: 1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHIQAVQQP 171
GL+++D+++ ENPDV A++ + +++AR+RR RA D++ K LP I+AVQ+P
Sbjct: 24 GLRYEDILMTENPDVKRALQYIPKEEQIARQRRIRRAIDLNFKHQYLPKEIEAVQEP 80
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: M1US14_CYAM1 (Cytochrome c reductase subunit 7(VI) n=2 Tax=cellular organisms TaxID=131567 RepID=M1US14_CYAM1) HSP 1 Score: 49.7 bits (117), Expect = 3.880e-6 Identity = 23/51 (45.10%), Postives = 39/51 (76.47%), Query Frame = 1
Query: 1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHI 153
GL++DDL++E +P+V+ A+ +L PA++ R +R RA D+S+KKT L ++I
Sbjct: 37 GLRYDDLLLETDPEVSAALEQLPPAEQELRWKRIKRALDLSMKKTYLAENI 87
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: A0A0C3CYF1_HEBCY (Cytochrome b-c1 complex subunit 7 n=1 Tax=Hebeloma cylindrosporum h7 TaxID=686832 RepID=A0A0C3CYF1_HEBCY) HSP 1 Score: 49.3 bits (116), Expect = 6.460e-6 Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 1
Query: 1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLP 144
G K+DDL++EENP V A+ RLTPA+K R R RA S+ PLP
Sbjct: 40 GFKYDDLLVEENPQVQRALGRLTPAEKFDRAYRLKRASQQSVLHAPLP 87
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: A0A7S0D5M2_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D5M2_9EUKA) HSP 1 Score: 48.1 bits (113), Expect = 1.630e-5 Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1
Query: 1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHI 153
GL++DDL+IE +PDV AI RL P ++ R+ R RA D LK + +P+ +
Sbjct: 43 GLRYDDLLIETDPDVMTAISRLPPRERALRQMRLKRALDCELKHSYVPEQL 93
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: A0A5D6YYW9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YYW9_9STRA) HSP 1 Score: 47.4 bits (111), Expect = 2.390e-5 Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHIQAVQQP 171
GLK+DD +++ P V EA+ + + AR RR RA D S+K+T LP+ IQA+Q+P
Sbjct: 24 GLKYDDALVDI-PAVQEALHWVPKGEYTARTRRIARATDCSMKRTYLPEEIQAIQKP 79 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig121326.1636.1 >prot_H-elongata_contig121326.1636.1 ID=prot_H-elongata_contig121326.1636.1|Name=mRNA_H-elongata_contig121326.1636.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp MIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHIQAVQQPback to top mRNA from alignment at H-elongata_contig121326:1622..1792+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig121326.1636.1 ID=mRNA_H-elongata_contig121326.1636.1|Name=mRNA_H-elongata_contig121326.1636.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig121326:1622..1792+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig121326:1622..1792+ >mRNA_H-elongata_contig121326.1636.1 ID=mRNA_H-elongata_contig121326.1636.1|Name=mRNA_H-elongata_contig121326.1636.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig121326:1622..1792+ (Himanthalia elongata Himel1 dioecious)back to top |