mRNA_H-elongata_contig121167.1625.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121167.1625.1
Unique NamemRNA_H-elongata_contig121167.1625.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig121167.1625.1 vs. uniprot
Match: D8LDK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK1_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 7.360e-28
Identity = 57/84 (67.86%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:    4 PFLPWQEKIPPLLVELYPTFWRMRTNSTER--QGHGHKKMSNLQYCLSSRQIMLDLDTGRFPLAFMWALPEVKHLEGLVLAEIH 249
            P  P +EK PPL++EL PT WR+RT STER   G GHKK +NLQYC +SRQIMLDLD GRFPLA MWALPEV    G V+AEIH
Sbjct:  151 PKTPKKEKRPPLVIELLPTCWRIRTISTERLRHGDGHKKTANLQYCFASRQIMLDLDNGRFPLALMWALPEVMQEAGTVIAEIH 234
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BLAST of mRNA_H-elongata_contig121167.1625.1 vs. uniprot
Match: A0A6H5KXS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS5_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.010e-27
Identity = 57/84 (67.86%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    4 PFLPWQEKIPPLLVELYPTFWRMRTNSTER--QGHGHKKMSNLQYCLSSRQIMLDLDTGRFPLAFMWALPEVKHLEGLVLAEIH 249
            P  P +EK PPL+++L PT WR+RT STER   G GHKK  NLQYC SSRQIMLDLD GRFPLA MWALPEV    G V+AEIH
Sbjct:  306 PKTPKKEKKPPLVIDLLPTCWRIRTISTERLRHGDGHKKTGNLQYCFSSRQIMLDLDNGRFPLALMWALPEVMQEAGTVIAEIH 389
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BLAST of mRNA_H-elongata_contig121167.1625.1 vs. uniprot
Match: A0A835Z816_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z816_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 5.060e-7
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 1 
Query:   22 EKIPPLLVELYPTFWRMRTNSTERQGHGHKKMSN---LQYCLSSRQIMLDLDTGRFPLAFMWALPEVKHLEG 228
            ++ PPL+VEL+P  W++RT S +     H + +    LQY   +R ++L L+T R P   +WA PE  H  G
Sbjct:  148 DRRPPLIVELHPCHWKIRTPSADFAATVHPRRAAAGALQYGRGARCVLLALETRRLPRELLWAAPEAAHCAG 219
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121167.1625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDK1_ECTSI7.360e-2867.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXS5_9PHAE1.010e-2767.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z816_9STRA5.060e-737.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121167contigH-elongata_contig121167:230..997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929712.4208393-CDS-H-elongata_contig121167:229..3791622929712.4208393-CDS-H-elongata_contig121167:229..379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121167 230..379 +
1691679128.7469213-CDS-H-elongata_contig121167:229..3791691679128.7469213-CDS-H-elongata_contig121167:229..379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121167 230..379 +
1622929713.2024012-CDS-H-elongata_contig121167:898..9971622929713.2024012-CDS-H-elongata_contig121167:898..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121167 899..997 +
1691679128.7547524-CDS-H-elongata_contig121167:898..9971691679128.7547524-CDS-H-elongata_contig121167:898..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121167 899..997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121167.1625.1prot_H-elongata_contig121167.1625.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121167 230..997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121167.1625.1

>prot_H-elongata_contig121167.1625.1 ID=prot_H-elongata_contig121167.1625.1|Name=mRNA_H-elongata_contig121167.1625.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MPFLPWQEKIPPLLVELYPTFWRMRTNSTERQGHGHKKMSNLQYCLSSRQ
IMLDLDTGRFPLAFMWALPEVKHLEGLVLAEIH
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mRNA from alignment at H-elongata_contig121167:230..997+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121167.1625.1 ID=mRNA_H-elongata_contig121167.1625.1|Name=mRNA_H-elongata_contig121167.1625.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=768bp|location=Sequence derived from alignment at H-elongata_contig121167:230..997+ (Himanthalia elongata Himel1 dioecious)
ATGCCGTTTCTACCTTGGCAGGAGAAAATCCCTCCTTTATTGGTTGAACT
CTACCCCACCTTCTGGCGGATGCGCACCAACTCCACGGAGAGGCAAGGCC
ACGGTCACAAGAAGATGTCCAACCTGCAGTACTGCCTGTCTTCTCGGCAG
GTGAAGGAGGAGGGGGGGGGGAAAGGCTCTCGTGTGTGCGTATACCGCGG
AGAGAGTGGGATTGGGCGTGTGTCCGTTGGCTCGTGGGGGGCTGGCGGGG
TACGCGCCCCAAATCGCTGAATCGTGAGCTTTTGTCCTCTGCCCCTTCGC
GACGTACGGGCACGATATATATATATATATATATATTACATCGGAGGTTA
AGAAAAAGAGTTCTGCGATGGCGTTTCATGTGTTTTCCTGGTATTGCTGT
TGGCGGTAGGTAACTTGAGAGCAGCGAGCGGGGTGTTGGGTAATGTATGT
AACCACTATGGCTACGAAGACTCGTTTCCGGAAGGTGAGGAAGAGGGGTG
TCGTTTCGCGGTCGGGTTGCGCCCGCAGCCCCTATCCCCCCCACCCCCCT
GCGCGATATGCTTTCGCCGCTTGTCGTTCCAAGAAGCATGAGCCCCACGA
CGTCCCTCTGACGATTGCTATTTTTCATCCCCACTCTGAACATGGTTTGC
TTTTATATCACCATTCAAGATCATGCTCGACCTCGACACGGGAAGGTTTC
CGCTGGCGTTCATGTGGGCCCTTCCTGAGGTGAAGCACCTGGAAGGCCTC
GTCTTGGCGGAGATACAC
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Coding sequence (CDS) from alignment at H-elongata_contig121167:230..997+

>mRNA_H-elongata_contig121167.1625.1 ID=mRNA_H-elongata_contig121167.1625.1|Name=mRNA_H-elongata_contig121167.1625.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig121167:230..997+ (Himanthalia elongata Himel1 dioecious)
ATGCCGTTTCTACCTTGGCAGGAGAAAATCCCTCCTTTATTGGTTGAACT
CTACCCCACCTTCTGGCGGATGCGCACCAACTCCACGGAGAGGCAAGGCC
ACGGTCACAAGAAGATGTCCAACCTGCAGTACTGCCTGTCTTCTCGGCAG
ATGCCGTTTCTACCTTGGCAGGAGAAAATCCCTCCTTTATTGGTTGAACT
CTACCCCACCTTCTGGCGGATGCGCACCAACTCCACGGAGAGGCAAGGCC
ACGGTCACAAGAAGATGTCCAACCTGCAGTACTGCCTGTCTTCTCGGCAG
ATCATGCTCGACCTCGACACGGGAAGGTTTCCGCTGGCGTTCATGTGGGC
CCTTCCTGAGGTGAAGCACCTGGAAGGCCTCGTCTTGGCGGAGATACACA
TCATGCTCGACCTCGACACGGGAAGGTTTCCGCTGGCGTTCATGTGGGCC
CTTCCTGAGGTGAAGCACCTGGAAGGCCTCGTCTTGGCGGAGATACAC
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