mRNA_H-elongata_contig121138.1623.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121138.1623.1
Unique NamemRNA_H-elongata_contig121138.1623.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig121138.1623.1 vs. uniprot
Match: D8LDB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB3_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 8.280e-33
Identity = 60/136 (44.12%), Postives = 86/136 (63.24%), Query Frame = 1 
Query:    1 IVPTSEALYAKEGEGISDVRIHRIQQEAPLLSFAMNWADGGGAGGNQDTADLVNIFLFAKQVDPPVNVELLVQKDRTNDNLAHFEVVMDWGPIGWDFYREGALSVCIQGARDAKHTDCGSYTVFGISFGEHGNVDA 408
            I+P +EA  A +G+GIS+V + R++Q    LSF++ W DGGGAGG +DTA  V+I+L A+Q DPP  VEL+V+++  ND L+H EV MDW  +GWD  R+G L  C+   +D  +  C  +  F        +VDA
Sbjct:  152 ILPEAEAPSATQGDGISNVDVPRVEQNGSYLSFSVTWGDGGGAGGFEDTAPFVDIWLVAEQSDPPAWVELVVEQNVENDMLSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYACSDFVSFAAMEETAADVDA 287
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121138.1623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDB3_ECTSI8.280e-3344.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121138contigH-elongata_contig121138:3..737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_001870.1
Exons2
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929712.2864027-CDS-H-elongata_contig121138:2..2241622929712.2864027-CDS-H-elongata_contig121138:2..224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121138 3..224 +
1691679128.7131083-CDS-H-elongata_contig121138:2..2241691679128.7131083-CDS-H-elongata_contig121138:2..224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121138 3..224 +
1622929712.304023-CDS-H-elongata_contig121138:551..7371622929712.304023-CDS-H-elongata_contig121138:551..737Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121138 552..737 +
1691679128.7215831-CDS-H-elongata_contig121138:551..7371691679128.7215831-CDS-H-elongata_contig121138:551..737Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121138 552..737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121138.1623.1prot_H-elongata_contig121138.1623.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121138 3..737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121138.1623.1

>prot_H-elongata_contig121138.1623.1 ID=prot_H-elongata_contig121138.1623.1|Name=mRNA_H-elongata_contig121138.1623.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
IVPTSEALYAKEGEGISDVRIHRIQQEAPLLSFAMNWADGGGAGGNQDTA
DLVNIFLFAKQVDPPVNVELLVQKDRTNDNLAHFEVVMDWGPIGWDFYRE
GALSVCIQGARDAKHTDCGSYTVFGISFGEHGNVDA
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mRNA from alignment at H-elongata_contig121138:3..737+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121138.1623.1 ID=mRNA_H-elongata_contig121138.1623.1|Name=mRNA_H-elongata_contig121138.1623.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=735bp|location=Sequence derived from alignment at H-elongata_contig121138:3..737+ (Himanthalia elongata Himel1 dioecious)
ATCGTTCCCACCTCAGAGGCTCTCTACGCTAAGGAGGGGGAAGGTATCTC
CGACGTCCGCATTCACCGGATCCAACAGGAAGCCCCACTGCTTTCGTTCG
CGATGAACTGGGCGGACGGAGGTGGCGCTGGCGGAAATCAGGACACCGCT
GATCTGGTGAACATATTCCTGTTTGCCAAACAAGTCGATCCGCCGGTGAA
CGTGGAGCTGCTTGTACAGAAGGTGTTGTGCATTGGTCTATGGGGACAAG
GACTGCATATATGCCATACTAAAGCATACCCTTATGTCGACCTATCAATG
GCGGCTCGAATGTCGATCTTGGCGGACAATAGGGCATTGCGCATATATCG
TGCGTGGAGCATGTCCGCCATGTCTGGAACTATTTGGACCGAGAGTTAAT
TGATTCACAAGGACACGCTTCTCCTGCCTGCAATAAATTAGGCGTATGAG
CAGGTACCATGAGCAAACTACGCCATTTACCCCCGCCCAGTTTCGTTTCA
ACAAATTCTTCCTTGCCGTACATCTGGCCCAAATTATTGCCCATCACAGG
ATCGTACTAACGACAACCTAGCACATTTTGAAGTCGTCATGGATTGGGGG
CCGATTGGCTGGGATTTCTACCGGGAAGGAGCGCTGAGCGTCTGCATTCA
GGGTGCAAGGGATGCCAAACACACAGACTGTGGCAGCTACACAGTCTTTG
GGATCAGTTTTGGAGAGCATGGAAACGTCGACGCG
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Coding sequence (CDS) from alignment at H-elongata_contig121138:3..737+

>mRNA_H-elongata_contig121138.1623.1 ID=mRNA_H-elongata_contig121138.1623.1|Name=mRNA_H-elongata_contig121138.1623.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig121138:3..737+ (Himanthalia elongata Himel1 dioecious)
ATCGTTCCCACCTCAGAGGCTCTCTACGCTAAGGAGGGGGAAGGTATCTC
CGACGTCCGCATTCACCGGATCCAACAGGAAGCCCCACTGCTTTCGTTCG
CGATGAACTGGGCGGACGGAGGTGGCGCTGGCGGAAATCAGGACACCGCT
GATCTGGTGAACATATTCCTGTTTGCCAAACAAGTCGATCCGCCGGTGAA
CGTGGAGCTGCTTGTACAGAAGATCGTTCCCACCTCAGAGGCTCTCTACG
CTAAGGAGGGGGAAGGTATCTCCGACGTCCGCATTCACCGGATCCAACAG
GAAGCCCCACTGCTTTCGTTCGCGATGAACTGGGCGGACGGAGGTGGCGC
TGGCGGAAATCAGGACACCGCTGATCTGGTGAACATATTCCTGTTTGCCA
AACAAGTCGATCCGCCGGTGAACGTGGAGCTGCTTGTACAGAAGGATCGT
ACTAACGACAACCTAGCACATTTTGAAGTCGTCATGGATTGGGGGCCGAT
TGGCTGGGATTTCTACCGGGAAGGAGCGCTGAGCGTCTGCATTCAGGGTG
CAAGGGATGCCAAACACACAGACTGTGGCAGCTACACAGTCTTTGGGATC
AGTTTTGGAGAGCATGGAAACGTCGACGCGGATCGTACTAACGACAACCT
AGCACATTTTGAAGTCGTCATGGATTGGGGGCCGATTGGCTGGGATTTCT
ACCGGGAAGGAGCGCTGAGCGTCTGCATTCAGGGTGCAAGGGATGCCAAA
CACACAGACTGTGGCAGCTACACAGTCTTTGGGATCAGTTTTGGAGAGCA
TGGAAACGTCGACGCG
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