mRNA_H-elongata_contig12080.1600.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12080.1600.1
Unique NamemRNA_H-elongata_contig12080.1600.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12080.1600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12080contigH-elongata_contig12080:4956..5570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size560
Cds size357
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12080.1600.1prot_H-elongata_contig12080.1600.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12080 4956..5368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929709.83603-CDS-H-elongata_contig12080:4955..51211622929709.83603-CDS-H-elongata_contig12080:4955..5121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12080 4956..5121 +
1691679127.8160295-CDS-H-elongata_contig12080:4955..51211691679127.8160295-CDS-H-elongata_contig12080:4955..5121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12080 4956..5121 +
1622929709.8774357-CDS-H-elongata_contig12080:5177..53681622929709.8774357-CDS-H-elongata_contig12080:5177..5368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12080 5178..5368 +
1691679127.8272374-CDS-H-elongata_contig12080:5177..53681691679127.8272374-CDS-H-elongata_contig12080:5177..5368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12080 5178..5368 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929709.89513-UTR-H-elongata_contig12080:5368..55701622929709.89513-UTR-H-elongata_contig12080:5368..5570Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12080 5369..5570 +
1691679127.837158-UTR-H-elongata_contig12080:5368..55701691679127.837158-UTR-H-elongata_contig12080:5368..5570Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12080 5369..5570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12080.1600.1

>prot_H-elongata_contig12080.1600.1 ID=prot_H-elongata_contig12080.1600.1|Name=mRNA_H-elongata_contig12080.1600.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
FHSHRIWLQHLCLLPRSLHAAANGSHFLHVPVRRILSLCPRSKEFFHTPR
LRFQSDVDAEEGFAAAAPGGCTAGEHARGGRCRCCCCCKRDLVFRAGGAV
TSAGDGVVTLPPRAGLEW*
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mRNA from alignment at H-elongata_contig12080:4956..5570+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12080.1600.1 ID=mRNA_H-elongata_contig12080.1600.1|Name=mRNA_H-elongata_contig12080.1600.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=615bp|location=Sequence derived from alignment at H-elongata_contig12080:4956..5570+ (Himanthalia elongata Himel1 dioecious)
TTCCACTCTCACCGCATTTGGCTGCAGCACTTGTGCCTTTTGCCGCGTTC
GCTTCACGCGGCTGCCAATGGCTCACATTTTCTCCATGTCCCTGTGCGCC
GGATCCTCTCCCTCTGCCCACGTTCGAAGGAGTTCTTTCACACGCCTCGA
CTTCGATTCCAGTCGGGTGGTGCGCTAGGCCTCCGCTACGAGGAACTCCT
GACGCGCCCGCTACCATCGAAGATGTGGATGCAGAGGAAGGCTTTGCGGC
TGCCGCGCCTGGAGGGTGCACCGCGGGCGAGCACGCACGCGGTGGCCGCT
GCCGCTGTTGCTGCTGCTGCAAGCGAGATCTTGTTTTTCGTGCGGGTGGA
GCCGTCACTTCGGCCGGAGATGGGGTCGTTACTCTTCCCCCTAGAGCTGG
ACTAGAGTGGTAGCTGGTGTTGGAATTCTTCGATTTTCTTCCCTCGTGGG
TGGAGACGACGGGAGCTGGGGAGTAAGATGACGGAGGGTCTGGCGTGGTA
GTTGGGGATAGCTTCTCCTCGGCGGAGGGGTCAGCACGGGCTGGATGGCA
ACGGCCCTGCGCGGTGACGCGGGCTTGAATAAGGCGGTAATTCGTCACGT
CACCTATGTTGTCCT
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Coding sequence (CDS) from alignment at H-elongata_contig12080:4956..5570+

>mRNA_H-elongata_contig12080.1600.1 ID=mRNA_H-elongata_contig12080.1600.1|Name=mRNA_H-elongata_contig12080.1600.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig12080:4956..5570+ (Himanthalia elongata Himel1 dioecious)
TTCCACTCTCACCGCATTTGGCTGCAGCACTTGTGCCTTTTGCCGCGTTC
GCTTCACGCGGCTGCCAATGGCTCACATTTTCTCCATGTCCCTGTGCGCC
GGATCCTCTCCCTCTGCCCACGTTCGAAGGAGTTCTTTCACACGCCTCGA
CTTCGATTCCAGTCGGTTCCACTCTCACCGCATTTGGCTGCAGCACTTGT
GCCTTTTGCCGCGTTCGCTTCACGCGGCTGCCAATGGCTCACATTTTCTC
CATGTCCCTGTGCGCCGGATCCTCTCCCTCTGCCCACGTTCGAAGGAGTT
CTTTCACACGCCTCGACTTCGATTCCAGTCGGATGTGGATGCAGAGGAAG
GCTTTGCGGCTGCCGCGCCTGGAGGGTGCACCGCGGGCGAGCACGCACGC
GGTGGCCGCTGCCGCTGTTGCTGCTGCTGCAAGCGAGATCTTGTTTTTCG
TGCGGGTGGAGCCGTCACTTCGGCCGGAGATGGGGTCGTTACTCTTCCCC
CTAGAGCTGGACTAGAGTGGTAGATGTGGATGCAGAGGAAGGCTTTGCGG
CTGCCGCGCCTGGAGGGTGCACCGCGGGCGAGCACGCACGCGGTGGCCGC
TGCCGCTGTTGCTGCTGCTGCAAGCGAGATCTTGTTTTTCGTGCGGGTGG
AGCCGTCACTTCGGCCGGAGATGGGGTCGTTACTCTTCCCCCTAGAGCTG
GACTAGAGTGGTAG
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