mRNA_H-elongata_contig120718.1593.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120718.1593.1
Unique NamemRNA_H-elongata_contig120718.1593.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120718.1593.1 vs. uniprot
Match: A0A6H5KU04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU04_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.870e-20
Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:  112 IGRRY*RSLLTSMGLARW----EFSFLSDTCLRMFEDNEGAKALAENPLSSAKSKHIDIRRHFLRDLVMSGNLDICSVSTHLQHADLLTRALTVVPFKKHRQVLLNLP 423
            +GRR  RSL T+ G  RW             +++ EDN+GA +L +NP SSA+SKHID+R HF+R+L  SG + +  + T  QHADLLT+AL     + HR  L+N+P
Sbjct:    4 VGRRS-RSLRTTKGRYRWCRTPXXXXXXXXXIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNMP 110
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BLAST of mRNA_H-elongata_contig120718.1593.1 vs. uniprot
Match: A0A6H5KVG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVG7_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.130e-19
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:  193 LRMFEDNEGAKALAENPLSSAKSKHIDIRRHFLRDLVMSGNLDICSVSTHLQHADLLTRALTVVPFKKHRQVLLNLP 423
            +++ EDN+GA  L +NPLSSA+SKHID+R HF+R+L  SG + +  VST  QHADLLT+AL  V  + HR+ L+NLP
Sbjct:   61 IQVREDNQGAMTLVQNPLSSARSKHIDVRFHFIRELFKSGRISVEYVSTDEQHADLLTKALCRVKLEYHRKALMNLP 137
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BLAST of mRNA_H-elongata_contig120718.1593.1 vs. uniprot
Match: A0A6H5JDY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY5_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.530e-19
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:  181 SDTCLRMFEDNEGAKALAENPLSSAKSKHIDIRRHFLRDLVMSGNLDICSVSTHLQHADLLTRALTVVPFKKHRQVLLNLP 423
            S + +++ EDN+GA AL +NPLSSA+SKHID+R HF+R L  SG++ I  VST  QHAD+LT+AL+    + HR+ L+NLP
Sbjct:  181 SGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLP 261
[Close]
BLAST of mRNA_H-elongata_contig120718.1593.1 vs. uniprot
Match: A0A6H5JYG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYG2_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.230e-18
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:  181 SDTCLRMFEDNEGAKALAENPLSSAKSKHIDIRRHFLRDLVMSGNLDICSVSTHLQHADLLTRALTVVPFKKHRQVLLNLPV 426
            S   +R+ EDNEGA AL +NP SSA+SKHID+R HF+R+LV +G +   +VST  QHAD+LT+ L     + HR+ L+NLP+
Sbjct:  160 SGATIRVREDNEGALALVQNPFSSARSKHIDVRFHFIRELVKAGKITADNVSTEEQHADMLTKVLGRGKLEYHRKALMNLPM 241
[Close]
BLAST of mRNA_H-elongata_contig120718.1593.1 vs. uniprot
Match: A0A6H5JJC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC5_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.960e-18
Identity = 40/77 (51.95%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:  193 LRMFEDNEGAKALAENPLSSAKSKHIDIRRHFLRDLVMSGNLDICSVSTHLQHADLLTRALTVVPFKKHRQVLLNLP 423
            +++ EDN+GA AL +NPLSS ++KHID+R HF+R L  SG + +  V T  QHADLLT+AL+    + HR+ L+NLP
Sbjct:   40 IQVLEDNQGAMALVQNPLSSGRTKHIDVRFHFIRGLFRSGEISVKFVPTTEQHADLLTKALSRASLQYHRRKLMNLP 116
[Close]
BLAST of mRNA_H-elongata_contig120718.1593.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.450e-18
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:  181 SDTCLRMFEDNEGAKALAENPLSSAKSKHIDIRRHFLRDLVMSGNLDICSVSTHLQHADLLTRALTVVPFKKHRQVLLNLP 423
            S + +++ EDN+GA AL +NPLSSA+SKHID+R HF+R L  SG++ I  VST  QHAD+LT+AL+    + HR+ L+NLP
Sbjct:  515 SGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLP 595
[Close]
BLAST of mRNA_H-elongata_contig120718.1593.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 5.120e-18
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:  181 SDTCLRMFEDNEGAKALAENPLSSAKSKHIDIRRHFLRDLVMSGNLDICSVSTHLQHADLLTRALTVVPFKKHRQVLLNLP 423
            S + +++ EDN+GA AL +NPLSSA+SKHID+R HF+R L  SG++ I  VST  QHAD+LT+AL+    + HR+ L+NLP
Sbjct: 1114 SGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLP 1194
[Close]
BLAST of mRNA_H-elongata_contig120718.1593.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 5.270e-18
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:  181 SDTCLRMFEDNEGAKALAENPLSSAKSKHIDIRRHFLRDLVMSGNLDICSVSTHLQHADLLTRALTVVPFKKHRQVLLNLP 423
            S + +++ EDN+GA AL +NPLSSA+SKHID+R HF+R L  SG++ I  VST  QHAD+LT+AL+    + HR+ L+NLP
Sbjct: 1494 SGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLP 1574
[Close]
BLAST of mRNA_H-elongata_contig120718.1593.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 5.350e-18
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:  181 SDTCLRMFEDNEGAKALAENPLSSAKSKHIDIRRHFLRDLVMSGNLDICSVSTHLQHADLLTRALTVVPFKKHRQVLLNLP 423
            S + +++ EDN+GA AL +NPLSSA+SKHID+R HF+R L  SG++ I  VST  QHAD+LT+AL+    + HR+ L+NLP
Sbjct: 1817 SGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLP 1897
[Close]
BLAST of mRNA_H-elongata_contig120718.1593.1 vs. uniprot
Match: A0A6H5KJM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM0_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.460e-17
Identity = 41/81 (50.62%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:  181 SDTCLRMFEDNEGAKALAENPLSSAKSKHIDIRRHFLRDLVMSGNLDICSVSTHLQHADLLTRALTVVPFKKHRQVLLNLP 423
            S + +++ EDN+GA AL +NPLSS ++KHID+R HF+R L  SGN+ +  V T  QHAD+LT+AL+    + HR+ L+NLP
Sbjct:  151 SGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRSGNISVNFVPTTEQHADVLTKALSRASLQYHRRKLMNLP 231
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120718.1593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU04_9PHAE3.870e-2044.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVG7_9PHAE1.130e-1955.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDY5_9PHAE4.530e-1954.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYG2_9PHAE3.230e-1852.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJC5_9PHAE3.960e-1851.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGX6_9PHAE4.450e-1854.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4H5_9PHAE5.120e-1854.32CCHC-type domain-containing protein n=11 Tax=Ectoc... [more]
A0A6H5L715_9PHAE5.270e-1854.32CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LGF7_9PHAE5.350e-1854.32Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJM0_9PHAE1.460e-1750.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120718contigH-elongata_contig120718:572..1400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score71.6
Seed ortholog evalue2.2e-10
Seed eggNOG ortholog5297.GMQ_23762T0
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs2YC45@29000,38DPC@33154,3NUZ7@4751,3UY7N@5204,COG0141@1,COG2801@1,KOG0017@2759,KOG4439@2759
COG Functional cat.L
Best tax levelPucciniomycotina
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size589
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120718.1593.1prot_H-elongata_contig120718.1593.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120718 732..1253 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.9956844-UTR-H-elongata_contig120718:571..7311622929708.9956844-UTR-H-elongata_contig120718:571..731Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120718 572..731 -
1691679127.5512624-UTR-H-elongata_contig120718:571..7311691679127.5512624-UTR-H-elongata_contig120718:571..731Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120718 572..731 -
1622929709.04725-UTR-H-elongata_contig120718:1253..14001622929709.04725-UTR-H-elongata_contig120718:1253..1400Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120718 1254..1400 -
1691679127.582898-UTR-H-elongata_contig120718:1253..14001691679127.582898-UTR-H-elongata_contig120718:1253..1400Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120718 1254..1400 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929709.0163462-CDS-H-elongata_contig120718:731..9831622929709.0163462-CDS-H-elongata_contig120718:731..983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120718 732..983 -
1691679127.5624845-CDS-H-elongata_contig120718:731..9831691679127.5624845-CDS-H-elongata_contig120718:731..983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120718 732..983 -
1622929709.0318108-CDS-H-elongata_contig120718:1223..12531622929709.0318108-CDS-H-elongata_contig120718:1223..1253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120718 1224..1253 -
1691679127.5712276-CDS-H-elongata_contig120718:1223..12531691679127.5712276-CDS-H-elongata_contig120718:1223..1253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120718 1224..1253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120718.1593.1

>prot_H-elongata_contig120718.1593.1 ID=prot_H-elongata_contig120718.1593.1|Name=mRNA_H-elongata_contig120718.1593.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MGLARWEFSFLSDTCLRMFEDNEGAKALAENPLSSAKSKHIDIRRHFLRD
LVMSGNLDICSVSTHLQHADLLTRALTVVPFKKHRQVLLNLPV*
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mRNA from alignment at H-elongata_contig120718:572..1400-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120718.1593.1 ID=mRNA_H-elongata_contig120718.1593.1|Name=mRNA_H-elongata_contig120718.1593.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=829bp|location=Sequence derived from alignment at H-elongata_contig120718:572..1400- (Himanthalia elongata Himel1 dioecious)
ATCACAGGGAGGCTGTTGGCTGCTTGATGTGGCTGGCCACTATTACGAGG
CCTGATATCGCCAATGCTATGAGAACTGTGGCGAGGTACTCTCACAACCC
GAGCGGGCGGCATTGGAAGGCGGTACTGAAGATCATTGCTTACCTCAATG
GGACTAGCGAGATGGGAATTTTCTTTTGTCCGGGGTTCGGGTCTCGATAT
GTCGGTGTATGCGGATGCAGACTACGCCACTAAGGCGATGATCAAACAGT
CAGTTTCGGGAGTGGCAGTACTTCTCGGAGATACTGTCGTAGTTGTGAGC
AGTAGCACCCAGCGCTGTACGACGTTATCGACGGGTGATAAAGAGTATGT
AGCCATGGGTCAGGGAGCCAAAATGGGCTTGTACGTCAGGGCAGTACTTT
CATTCGTCCAACCGCAGCTGAGTGACACATGCCTAAGGATGTTTGAGGAC
AACGAGGGCGCAAAGGCTTTAGCGGAGAATCCACTGAGCTCCGCAAAAAG
TAAGCACATCGACATTCGAAGGCACTTCTTGCGTGATCTCGTTATGTCTG
GGAATCTGGATATTTGCAGCGTTTCGACGCACTTGCAACACGCCGACCTT
CTGACAAGGGCATTGACGGTAGTTCCGTTTAAGAAACATCGGCAGGTGCT
GTTGAATCTTCCGGTTTAGAGAGACACTGGCAGGTTCCGTTTTATTCGCC
CGGTATAGTGAGTAAGAAGTTTCTGCGCGGAGGCGTTTTTATTGGTCATG
TTCACGTAATGTGGTTGTGTTATGATGATTGGACCCTTATCCCCCGCTTT
AGGTAATGACTTAGGAATAGAACCCCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig120718:572..1400-

>mRNA_H-elongata_contig120718.1593.1 ID=mRNA_H-elongata_contig120718.1593.1|Name=mRNA_H-elongata_contig120718.1593.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig120718:572..1400- (Himanthalia elongata Himel1 dioecious)
ATGGGACTAGCGAGATGGGAATTTTCTTTTATGGGACTAGCGAGATGGGA
ATTTTCTTTTCTGAGTGACACATGCCTAAGGATGTTTGAGGACAACGAGG
GCGCAAAGGCTTTAGCGGAGAATCCACTGAGCTCCGCAAAAAGTAAGCAC
ATCGACATTCGAAGGCACTTCTTGCGTGATCTCGTTATGTCTGGGAATCT
GGATATTTGCAGCGTTTCGACGCACTTGCAACACGCCGACCTTCTGACAA
GGGCATTGACGGTAGTTCCGTTTAAGAAACATCGGCAGGTGCTGTTGAAT
CTTCCGGTTTAGCTGAGTGACACATGCCTAAGGATGTTTGAGGACAACGA
GGGCGCAAAGGCTTTAGCGGAGAATCCACTGAGCTCCGCAAAAAGTAAGC
ACATCGACATTCGAAGGCACTTCTTGCGTGATCTCGTTATGTCTGGGAAT
CTGGATATTTGCAGCGTTTCGACGCACTTGCAACACGCCGACCTTCTGAC
AAGGGCATTGACGGTAGTTCCGTTTAAGAAACATCGGCAGGTGCTGTTGA
ATCTTCCGGTTTAG
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