mRNA_H-elongata_contig120692.1588.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120692.1588.1
Unique NamemRNA_H-elongata_contig120692.1588.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig120692.1588.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.060e-23
Identity = 82/272 (30.15%), Postives = 125/272 (45.96%), Query Frame = 1
Query:    1 TCNVATWQNLETHYRAKGTREILRVSCEINGKIMEPGGDPFKFMMEIDRLAADLNRLGEKSVTELRKCVIIMSGLPTDYEMECRMLENNPVGLNRAEIERVVGNQYNRLLRQQQNSKAMSA------LKGHITVNRGKGGHRRHHPKFNRKCFNCRKKGHYARDCWAIPEMGTIAAIVGAACDGRKEKWESDSGATFHMSHTRAGMSVYEKASPRMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKSVKMDDVAYVPGISRNLLSTLKVVEQ 798
            T  +  W  L   Y        + ++  ++   ME G    K +   D L   L  LGE  + E R+ VI++S LPT+YE+   ++EN+   +   E++  +  +Y RL ++     A+ A       K   +    KG   R +  F  KC+NC + GH  RDC +        A+  A   GR   W  DSGAT HM+  R  +  YE     + V IADG  + V G G + +     G   K +KM +V ++PG+ R LLS  K+ E+
Sbjct:   78 TTAIMAWNTLRDFYNRMTRHNRVSMTRRLHEFKMEDGVTMAKHLDNFDELVVGLQTLGEP-LDEARQLVILLSSLPTEYELISSIVENSK-DVTLIEVKERLLKEYERLEKKDGTESALKATANGGKFKNAKSFKGRKGNSARKNNAFKGKCYNCDQIGHMKRDCPSSNVSNDEEAVF-AVGKGRSAGWLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRL----MGIDGKRIKMVEVLHIPGLDRRLLSVGKLAER 342          
BLAST of mRNA_H-elongata_contig120692.1588.1 vs. uniprot
Match: A0A225V1D5_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V1D5_9STRA)

HSP 1 Score: 105 bits (262), Expect = 6.710e-23
Identity = 76/238 (31.93%), Postives = 117/238 (49.16%), Query Frame = 1
Query:  100 MEPGGDPFKFMMEIDRLAADLNRLGEKSVTELRKCVIIMSGLPTDYEMECRMLENNPVGLNRAEIERVVGNQYNRLLRQQQNSKAMSALKGHITVNRGKGGHRRHHPK-----FNRKCFNCRKKGHYARDCWAIPEMGTIAAIVGAACDGRKEKWESDSGATFHMSHTRAGMSVYEKASPRMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKSVKMDDVAYVPGISRNLLSTLKVVEQ 798
            ME G    K +   D L   L  LGE  V E R+ V+++S LP++YE+   ++EN        E +  +  +++RL +++   KA            G+G  R+ + +     F  KCF C + GH  RDC  +    + +  V A  + R   W  DSGAT HM+  R  M  +++    + V IADG  L V G G +++    PG   K +KM +V Y+PG+ R LLS  K+ E+
Sbjct:    1 MEEGTPMAKHLDAFDELVVGLQTLGEP-VDETRQMVVLLSSLPSEYELIASIVENTK-DTTLIEFKEKLLKEHDRLQKKETTEKAFRVKGNPGRFKEGRGNGRKGNRQIRSGGFKGKCFGCDQVGHMKRDC-PVKNNDSDSDAVFAVGEERLTGWLIDSGATSHMTPFREDMFTFDRMVSGIEVTIADGKKLQVAGKGTVKL----PGVNGKRIKMMEVLYIPGLDRRLLSVGKLAER 231          
BLAST of mRNA_H-elongata_contig120692.1588.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 105 bits (262), Expect = 6.040e-22
Identity = 82/275 (29.82%), Postives = 123/275 (44.73%), Query Frame = 1
Query:    1 TCNVATWQNLETHYRAKGTREILRVSCEINGKIMEPGGDPFKFMMEIDRLAADLNRLGEKSVTELRKCVIIMSGLPTDYEMECRMLENNPVGLNRAEIERVVGNQYNRLLRQQQNSKAMSALKGHI------TVNRGKGGHR---RHHPKFNRKCFNCRKKGHYARDCWAIPEMGTIAAIVGAACDGRKEKWESDSGATFHMSHTRAGMSVYEKASPRMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKSVKMDDVAYVPGISRNLLSTLKVVEQ 798
            T  +  W  L   Y        + ++  ++   ME G    K + + D L   L  LGE  + E R+ VI++S LPT+YE+ C ++EN        E++  +  +Y RL +++   +A+ A           T   GKG      R +  F  KCFNC + GH  RDC            V A    R   W  DSGAT HM+  R  +  Y+     + V IADG  + V G G + +     G     +KM DV ++PG+ R LLS  ++ E+
Sbjct:   78 TSAIMAWNTLRDFYNRTTMHNRVTMTRRLHEFKMEGGVTMAKHLDDFDELIVGLQTLGEP-LDEARQLVILLSSLPTEYELICSIVENAK-DFTLIEVKEKLLKEYERLDKKEGAERALKATANGSKFRCAKTFRGGKGSKAFGSRKNGGFKGKCFNCGQVGHMKRDCPDPNAGNNDDDAVFAVGKSRSAAWLIDSGATAHMTPHRNDLFEYKDLDSDVEVTIADGKKIRVVGTGSVRL----TGIDGTRIKMIDVLFIPGLDRQLLSVSRLAER 346          
BLAST of mRNA_H-elongata_contig120692.1588.1 vs. uniprot
Match: A0A0P1AI35_PLAHL (Polyprotein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AI35_PLAHL)

HSP 1 Score: 83.2 bits (204), Expect = 1.620e-15
Identity = 65/230 (28.26%), Postives = 110/230 (47.83%), Query Frame = 1
Query:  100 MEPGGDPFKFMMEIDRLAADLNRLGEKSVTELRKCVIIMSGLPTDYEMECRMLENNPVGLNRAEIERVVGNQYNRLLRQQQNSKAMSALKGHITVNR--------GKGGHRRHHPKFNRKCFNCRKKGHYARDCWAIPEMGTIAAIVGAACDGRKEKWESDSGATFHMSHTRAGMSVYEKASPRMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKSVKMDDVAYVPGISR 765
            ME G    +     D L   L   GE+ V E R+ V+++S LP++Y++   ++EN    +   E++  +  +  +L R+    KA    +G+    R         KGG  R++ ++  KCFNC + GH  R+C A     +   +  A  + +  +W  DSGAT HM+  R G+S Y+     + V IA+G    V     +++     G   K ++M DV ++PG+ R
Sbjct:    1 MESGTSMAEHPDSFDELVVGLQTTGEQ-VDESRQLVVLLSSLPSEYDLMSSIVENTK-DITLIEVKEKLLKKSEKLQRKAATEKA---FRGNANARRFKDGRDNGRKGGPPRNNDEYKSKCFNCDQFGHRKRNCPASKRSDSDDTVF-ADGERKSSRWLVDSGATSHMTPHRKGLSDYKCLEASIEVTIAEGKISLVREADTVKL----TGLDGKGIRMVDVLHIPGLGR 220          
BLAST of mRNA_H-elongata_contig120692.1588.1 vs. uniprot
Match: UPI001C36177D (Uncharacterized protein n=2 Tax=Manduca sexta TaxID=7130 RepID=UPI001C36177D)

HSP 1 Score: 84.3 bits (207), Expect = 9.400e-15
Identity = 71/269 (26.39%), Postives = 127/269 (47.21%), Query Frame = 1
Query:   19 WQNLETHYRAKGTREILRVSCEINGKIMEPGGDPFKFMMEIDRLAADLNRLGEKSVTELRKCVIIMSGLPTDYEMECRMLENNPVGLNRAEIERVVGNQYNRLLRQQQNSKAMSALKGHITVNRGKGGHRRHHPKFNRKCFNCRKKGHYARDCWAIPEM---------GTIAAIVGAACDGRKEKWESDSGATFHMSHTRAGMSVYEKASPRMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKSVKMDDVAYVPGISRNLLSTLKVVEQ 798
            W NL+T Y  +G    L +   + G  +E   D   ++++I  L   L  +      +    V+I+SGLP+DY+     LEN+ + L    ++       ++LL+++         +G +  NR     R +      KC+ C+K  HYA++C               GT+  +   + D +   W  DSGAT HM++ +  +  Y   +PR+ V +A+   +  +G G + + +   GH+ ++ K+ DV YVPG+S NL+S  K+  +
Sbjct:  100 WNNLKTAYEDRGLCRRLGLLRTMLGLKLEQFNDMEAYLLKITELDQQLRDINAPLDDDFLS-VLILSGLPSDYDPLIMALENSNIKLCSETVK-------SKLLQEKLRRDFDKNEEGAMFTNRN--AKRGNKTSDKNKCYICKKPNHYAKNCPNKTNKSEKCEKALNGTL--LTALSTDVKSNAWYVDSGATCHMTNNKYLLQNYVVDTPRL-VTVANKEKMYSEGHGEVHLLL--KGHS-QNTKLCDVVYVPGLSTNLISVGKMASK 352          
BLAST of mRNA_H-elongata_contig120692.1588.1 vs. uniprot
Match: A0A225WE98_9STRA (Integrase, catalytic core protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WE98_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.950e-14
Identity = 69/219 (31.51%), Postives = 105/219 (47.95%), Query Frame = 1
Query:  142 DRLAADLNRLGEKSVTELRKCVIIMSGLPTDYEMECRMLENNPVGLNRAEIERVVGNQYNRLLRQQQNSKAMSALKGHITVNRGKGGHRRHHPKFNRKCFNCRKKGHYARDCWAIPEMGTIAAIVGAACDGRKEKWESDSGATFHMSHTRAGMSVYEKASPRMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKSVKMDDVAYVPGISRNLLSTLKVVEQ 798
            D L   L  LGE  V E R+ V+++S LP++YE+   ++EN    +   E++  +  ++ RL +++   KA         VN   G       +F   C N RK     R+C   P   + A    A  + R   W  DSGAT HM+  R  +  +E  +  + V IADG  L V G G +++     G   K +KM +V Y+PG+ R LLS  K+ E+
Sbjct:   15 DELVVGLQTLGEP-VDEARQMVVLLSSLPSEYELIASIVENTK-DITLIELKEKLLKEHERLQKKETTEKA-------FRVNGNPG-------RFKAGCGNSRKGN---RNC---PVKNSDAVF--AVGEERLTGWLIDSGATSHMTPFREDLFAFEGMASGIEVTIADGKKLRVAGKGTVKL----TGVDGKRIKMMEVLYIPGLDRRLLSMGKLAER 205          
BLAST of mRNA_H-elongata_contig120692.1588.1 vs. uniprot
Match: A0A0N1ICY1_PAPMA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A0N1ICY1_PAPMA)

HSP 1 Score: 82.0 bits (201), Expect = 6.260e-14
Identity = 77/280 (27.50%), Postives = 131/280 (46.79%), Query Frame = 1
Query:    1 TCNVATWQNLETHYRAKGTREILRVSCEINGKIMEPGGDPFKFMMEIDRLAADLNRLGEKSVTELRKCVIIMSGLPTDYEMECRMLENNPVGLNRAEIERVVGNQYNRLLRQQQNSKAMSALKGHITVNRGKGGHRRHHPKFNR-KCFNCRKKGHYARDC-------------WAIPEMGTIAAIVGAACDGRKEKWESDSGATFHMSHTRAGMSVYEKASPRMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKSVKMDDVAYVPGISRNLLSTLKVVEQ 798
            T     W NL+  Y  KG    L +   + G  +E   +   ++++I  L   L  +      +    V+I+SGLP DY+     LEN+ + L  +EI  V G    +LL++          +  +  NR K   R     F++ +CF C+K  HYA++C             +     GT+  +   + D     W  DSGAT HM++ ++ +  Y   +P++ V +A+ N +  +G G +E+ +   GHT +  K+ +V YVPG+S NL+S  K+  +
Sbjct:   98 TTGFEAWNNLKKAYEDKGLCRRLGLLRTLFGLKLEQFENMEAYLLKITELDQQLRDINAPLDDDFLS-VVILSGLPPDYDPLIMALENSNIKLC-SEI--VKG----KLLQENLRRDFEKCEENALFTNRVKNEKRN----FSKVRCFICKKPNHYAKNCPTKINKKERRCDKYEKAWNGTL--LTALSVDINSNAWYIDSGATCHMTNNKSLLQNYSVHTPKL-VTVANNNKMYSEGHGDVEILL--KGHT-QPTKLIEVIYVPGLSTNLISVGKMASK 359          
BLAST of mRNA_H-elongata_contig120692.1588.1 vs. uniprot
Match: A0A438FY49_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FY49_VITVI)

HSP 1 Score: 70.9 bits (172), Expect = 3.430e-10
Identity = 69/293 (23.55%), Postives = 130/293 (44.37%), Query Frame = 1
Query:    1 TCNVATWQNLETHYRAKGTREILRVSCEINGKIMEPGGDPFKFMMEIDRLAADLNRLGEKSVTELRKCVIIMSGLPTDYEMECRMLENNPVGLNRAEIERVVGNQYNRLLRQQQNSKAMSALKGHITVNRGK------GGHRRHHPKFNR--KCFNCRKKGHYARDCWAIPE-----MGTIAAIVGAACDGRK---------------------EKWESDSGATFHMSHTRAGMSVYEKASPRMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKSVKMDDVAYVPGISRNLLS 777
            T  V  W+ LE+ Y+ K     L     ++   M  G      +   +R+  DLN +G K V E  + +I++  LP+ YE     ++    G +   I  V     ++ L++  +     +++  +TV+RG+      GG  +  PK     +CF+C++KGH+ ++C    +         A +V A  D  K                     E W  D+GA++HM+++R   + +++ +   +V++ D   L V G G +++ +         V+  +  YVPG+ +NL+S
Sbjct:   79 TTAVGLWRKLESKYQKKSLTNRLYQKRRLHTLKMSEGMQVRDHLDNFNRIILDLNGVGVK-VEEEDQAMILLCSLPSSYE---NFVDTMMYGRDSISINDVKDALQSKELQKLVSGSGEGSVETGLTVSRGRSMERNGGGRSKSRPKSKAAMRCFHCKEKGHFRKNCPQRQKGIGQGSNGNAQVVVAQKDSEKQDSSDEGEGGDVLTVSTSSSAESWILDTGASYHMAYSRDLFTTFKEWNG--SVKLGDDGELGVKGSGSVQIKM-----YDGLVRTLNAWYVPGLRKNLIS 360          
BLAST of mRNA_H-elongata_contig120692.1588.1 vs. uniprot
Match: A0A438FBH4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FBH4_VITVI)

HSP 1 Score: 69.3 bits (168), Expect = 9.260e-10
Identity = 68/293 (23.21%), Postives = 129/293 (44.03%), Query Frame = 1
Query:    1 TCNVATWQNLETHYRAKGTREILRVSCEINGKIMEPGGDPFKFMMEIDRLAADLNRLGEKSVTELRKCVIIMSGLPTDYEMECRMLENNPVGLNRAEIERVVGNQYNRLLRQQQNSKAMSALKGHITVNRGK------GGHRRHHPKFNR--KCFNCRKKGHYARDCWAIPE-----MGTIAAIVGAACDGRK---------------------EKWESDSGATFHMSHTRAGMSVYEKASPRMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKSVKMDDVAYVPGISRNLLS 777
            T  V  W+ LE+ Y+ K     L     ++   M  G      +   +R+  DLN +G K V E  + +I++  LP+ YE     ++    G +      V     ++ L++  +     +++  +TV+RG+      GG  +  PK     +CF+C++KGH+ ++C    +         A +V A  D  K                     E W  D+GA++HM+++R   + +++ +   +V++ D   L V G G +++ +         V+  +  YVPG+ +NL+S
Sbjct:   79 TTAVGLWRKLESKYQKKSLTNRLYQKRRLHTLKMSEGMQVRNHLDNFNRIILDLNGVGVK-VEEEDQAMILLCSLPSSYE---NFVDTMMYGRDSISTNDVKDALQSKELQKLVSGSGEGSVETGLTVSRGRSMERNGGGRSKSRPKSKAAMRCFHCKEKGHFRKNCPQRQKGIGQGSNGNAQVVVAQKDSEKQDSSDEGEGGDVLTVSTSSSAESWILDTGASYHMAYSRDLFTTFKEWNG--SVKLGDDGELGVKGSGSVQIKM-----YDGLVRTLNAWYVPGLRKNLIS 360          
BLAST of mRNA_H-elongata_contig120692.1588.1 vs. uniprot
Match: A0A438CNZ9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CNZ9_VITVI)

HSP 1 Score: 68.9 bits (167), Expect = 1.630e-9
Identity = 69/293 (23.55%), Postives = 130/293 (44.37%), Query Frame = 1
Query:    1 TCNVATWQNLETHYRAKGTREILRVSCEINGKIMEPGGDPFKFMMEIDRLAADLNRLGEKSVTELRKCVIIMSGLPTDYEMECRMLENNPVGLNRAEIERVVGNQYNRLLRQQQNSKAMSALKGHITVNRGK-----GGHRRHHP---KFNRKCFNCRKKGHYARDCWAIPEM-----GTIAAIVGAACDGRK---------------------EKWESDSGATFHMSHTRAGMSVYEKASPRMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKSVKMDDVAYVPGISRNLLS 777
            T  V  W+ LE+ Y+ K     L     ++   M  G      +   +R+  DLN +G K V E  + +I++  LP+ YE     ++    G +   I  V    +++ L++  +     +++  +TV+RG+     GG R       K   +CF+C++KGH+ ++C    +         A +V A  D  K                     E W  D+GA++HM+++R   + +++ +   +V++ D   L V G G +++ +         V+  +  YVPG+ +NL+S
Sbjct:   79 TTAVGLWRKLESKYQKKSLTNRLYQKRRLHTLKMSEGMQVRDHLDNFNRIILDLNGVGVK-VEEEDQAMILLCSLPSSYE---NFVDTMMYGRDSISINDVKDALHSKELQKLVSGSGEGSVETGLTVSRGRSMERNGGGRSXXXXXXKAEMRCFHCKEKGHFRKNCPQRQKRIGQGSNGNAQVVVAQKDSEKQDSSDEGEGGDVLTVSTSSSAESWILDTGASYHMAYSRDLFTTFKEWNG--SVKLGDDGELGVKGSGSVQIKM-----YDGLVRTLNAWYVPGLRKNLIS 360          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120692.1588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A329SN38_9STRA1.060e-2330.15Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A225V1D5_9STRA6.710e-2331.93Integrase, catalytic core protein (Fragment) n=1 T... [more]
H3H572_PHYRM6.040e-2229.82Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A0P1AI35_PLAHL1.620e-1528.26Polyprotein n=1 Tax=Plasmopara halstedii TaxID=478... [more]
UPI001C36177D9.400e-1526.39Uncharacterized protein n=2 Tax=Manduca sexta TaxI... [more]
A0A225WE98_9STRA2.950e-1431.51Integrase, catalytic core protein n=1 Tax=Phytopht... [more]
A0A0N1ICY1_PAPMA6.260e-1427.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FY49_VITVI3.430e-1023.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FBH4_VITVI9.260e-1023.21Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CNZ9_VITVI1.630e-923.55Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120692contigH-elongata_contig120692:106..1092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue4.1e-22
Seed eggNOG ortholog67593.Physo127155
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size798
Cds size798
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.5137885-CDS-H-elongata_contig120692:105..4191622929708.5137885-CDS-H-elongata_contig120692:105..419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120692 106..419 -
1691679127.3511705-CDS-H-elongata_contig120692:105..4191691679127.3511705-CDS-H-elongata_contig120692:105..419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120692 106..419 -
1622929708.5313745-CDS-H-elongata_contig120692:608..10921622929708.5313745-CDS-H-elongata_contig120692:608..1092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120692 609..1092 -
1691679127.3624113-CDS-H-elongata_contig120692:608..10921691679127.3624113-CDS-H-elongata_contig120692:608..1092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120692 609..1092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120692.1588.1prot_H-elongata_contig120692.1588.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120692 106..1092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120692.1588.1

>prot_H-elongata_contig120692.1588.1 ID=prot_H-elongata_contig120692.1588.1|Name=mRNA_H-elongata_contig120692.1588.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=266bp
TCNVATWQNLETHYRAKGTREILRVSCEINGKIMEPGGDPFKFMMEIDRL
AADLNRLGEKSVTELRKCVIIMSGLPTDYEMECRMLENNPVGLNRAEIER
VVGNQYNRLLRQQQNSKAMSALKGHITVNRGKGGHRRHHPKFNRKCFNCR
KKGHYARDCWAIPEMGTIAAIVGAACDGRKEKWESDSGATFHMSHTRAGM
SVYEKASPRMTVEIADGNTLPVDGFGRIEMDVDQPGHTTKSVKMDDVAYV
PGISRNLLSTLKVVEQ
back to top

mRNA from alignment at H-elongata_contig120692:106..1092-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120692.1588.1 ID=mRNA_H-elongata_contig120692.1588.1|Name=mRNA_H-elongata_contig120692.1588.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=987bp|location=Sequence derived from alignment at H-elongata_contig120692:106..1092- (Himanthalia elongata Himel1 dioecious)
ACGTGTAACGTAGCAACGTGGCAAAATCTTGAAACACACTATAGAGCGAA GGGAACTAGAGAGATACTTCGCGTGTCCTGTGAAATTAACGGGAAAATAA TGGAACCAGGTGGGGACCCATTCAAATTTATGATGGAAATTGATAGGCTA GCAGCTGATCTCAACCGATTGGGCGAAAAATCCGTGACTGAATTAAGAAA ATGCGTAATTATCATGTCTGGTCTCCCTACGGACTACGAGATGGAGTGTC GCATGTTGGAAAACAACCCTGTTGGTCTTAACAGGGCTGAGATTGAGCGT GTCGTAGGGAATCAGTACAACAGACTTCTCAGACAACAACAGAATTCGAA GGCTATGTCGGCATTGAAGGGCCACATCACGGTGAATCGCGGAAAGGGGG GACACAGAAGACACCACCCCAAATTTAACCGAAAGTGCTTTAATTGCAGA AAGAAAGGTCACTACGCTCGGGACTGCTGGGCGAGTGAGGAATCAAGGGC CACCTACACCAGGAAGGGCGGTGGCAGCTGCAAGTGTTACATCTGTGGGA GTGAGAAGCACCTTGCGTACAAGCACTGTAGGCTGTGCAAAAGCCTTGAG CACCGGACGCGAGACTGTAAGGAGCGCGGGGCTGAAAAGGGCGCAATGCT GGAAAAACTGACTGTGCCGGCAGTCCCCGAGATGGGGACGATAGCGGCAA TAGTGGGAGCAGCTTGTGACGGTAGGAAGGAGAAATGGGAATCGGACTCA GGCGCCACATTCCACATGTCGCACACCCGGGCCGGAATGTCTGTGTACGA GAAGGCGTCACCGAGGATGACCGTTGAGATCGCCGACGGAAACACTCTAC CGGTGGACGGGTTCGGAAGAATTGAGATGGATGTGGACCAACCGGGTCAC ACAACCAAGAGCGTGAAGATGGACGATGTTGCGTATGTGCCAGGAATTTC GCGGAACCTACTATCTACCCTCAAAGTAGTTGAGCAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig120692:106..1092-

>mRNA_H-elongata_contig120692.1588.1 ID=mRNA_H-elongata_contig120692.1588.1|Name=mRNA_H-elongata_contig120692.1588.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1596bp|location=Sequence derived from alignment at H-elongata_contig120692:106..1092- (Himanthalia elongata Himel1 dioecious)
ACGTGTAACGTAGCAACGTGGCAAAATCTTGAAACACACTATAGAGCGAA
GGGAACTAGAGAGATACTTCGCGTGTCCTGTGAAATTAACGGGAAAATAA
TGGAACCAGGTGGGGACCCATTCAAATTTATGATGGAAATTGATAGGCTA
GCAGCTGATCTCAACCGATTGGGCGAAAAATCCGTGACTGAATTAAGAAA
ATGCGTAATTATCATGTCTGGTCTCCCTACGGACTACGAGATGGAGTGTC
GCATGTTGGAAAACAACCCTGTTGGTCTTAACAGGGCTGAGATTGAGCGT
GTCGTAGGGAATCAGTACAACAGACTTCTCAGACAACAACAGAATTCGAA
GGCTATGTCGGCATTGAAGGGCCACATCACGGTGAATCGCGGAAAGGGGG
GACACAGAAGACACCACCCCAAATTTAACCGAAAGTGCTTTAATTGCAGA
AAGAAAGGTCACTACGCTCGGGACTGCTGGGCGAACGTGTAACGTAGCAA
CGTGGCAAAATCTTGAAACACACTATAGAGCGAAGGGAACTAGAGAGATA
CTTCGCGTGTCCTGTGAAATTAACGGGAAAATAATGGAACCAGGTGGGGA
CCCATTCAAATTTATGATGGAAATTGATAGGCTAGCAGCTGATCTCAACC
GATTGGGCGAAAAATCCGTGACTGAATTAAGAAAATGCGTAATTATCATG
TCTGGTCTCCCTACGGACTACGAGATGGAGTGTCGCATGTTGGAAAACAA
CCCTGTTGGTCTTAACAGGGCTGAGATTGAGCGTGTCGTAGGGAATCAGT
ACAACAGACTTCTCAGACAACAACAGAATTCGAAGGCTATGTCGGCATTG
AAGGGCCACATCACGGTGAATCGCGGAAAGGGGGGACACAGAAGACACCA
CCCCAAATTTAACCGAAAGTGCTTTAATTGCAGAAAGAAAGGTCACTACG
CTCGGGACTGCTGGGCGATCCCCGAGATGGGGACGATAGCGGCAATAGTG
GGAGCAGCTTGTGACGGTAGGAAGGAGAAATGGGAATCGGACTCAGGCGC
CACATTCCACATGTCGCACACCCGGGCCGGAATGTCTGTGTACGAGAAGG
CGTCACCGAGGATGACCGTTGAGATCGCCGACGGAAACACTCTACCGGTG
GACGGGTTCGGAAGAATTGAGATGGATGTGGACCAACCGGGTCACACAAC
CAAGAGCGTGAAGATGGACGATGTTGCGTATGTGCCAGGAATTTCGCGGA
ACCTACTATCTACCCTCAAAGTAGTTGAGCAATCCCCGAGATGGGGACGA
TAGCGGCAATAGTGGGAGCAGCTTGTGACGGTAGGAAGGAGAAATGGGAA
TCGGACTCAGGCGCCACATTCCACATGTCGCACACCCGGGCCGGAATGTC
TGTGTACGAGAAGGCGTCACCGAGGATGACCGTTGAGATCGCCGACGGAA
ACACTCTACCGGTGGACGGGTTCGGAAGAATTGAGATGGATGTGGACCAA
CCGGGTCACACAACCAAGAGCGTGAAGATGGACGATGTTGCGTATGTGCC
AGGAATTTCGCGGAACCTACTATCTACCCTCAAAGTAGTTGAGCAA
back to top